Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007714

Physical Location & Seq

Genomic Coordinates Forward (+)

43563089 .. 43565211

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGCTTGGAGCATTTGCCTCAAGACTGCTTCGAGCAGATTTTATCATTGACATCTCCCGGAGATGCATGTCGTTCCTCGTTAGTCTCCTCGTCGATTCGTGCCATGGCCGATAAGGATAGCTTGTGGGGGATGTTTTTGCCGTCGGACTATTCAGCAATTCTGTCCAGATTTGTCACTCCAATACCTTATTCATCCAACAAGGACTTGTTCATCAGGTTGTGCCGTCCAAATCTAATCGATTGTGGTAAAAAGATGTTCTCAAAAGAGAAATCAACAGGTAAAAAATCTTACATGTTAAGTGCAAGGGATCTTTCAATTACTTGGGCGTGCAATCCTCTCTATTGGAGTTGGAAGCCTTCCTCCGAATCAAGATTTGCAGAGGTTGCTGAACTCAGAACCATCTGGTGGCTAGAAATATGTGGCACCATGAATAGTCAATTGCTATCACCAAAAACAGTTTATAGCGCTCATCTTGTTATCAAGTTGGCCAATCGTGCATATGGTTTGGACTCGTTACCTTCTGAGATTTCACTTGAAGTTGGCAATTACAAATCACAAGGCACTGTATACTTGAGTGCAAATCGGAAGGCAACAGAAGTAGACGAACGTGTGAGACCAATCAGGGTTCTGGAAGAACGTCTTCGTGAGCGAACAGATGGATGGATGGAGATTGAACTGGGGAGCTTTTACAATGATGGATGTTATTATAACAAGGATGTGAAGATGAGCCTAAAAGAAGTCAAGGGTGCACACCTAAAAGGTGGCCTTATTGTTGAGGGAATTGAGATTAGGCCAAAAAAATTAGTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0030246

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

271

Amino Acids

30.78

Weight (kDa)

8.73

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	3 - 43	8.4e-07	F-box-like
F-box	PF00646	3 - 43	3.8e-06	F-box domain
PP2	PF14299	95 - 266	1.5e-53	Phloem protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09155 AT1G56240 AT1G56250
fragaria_vesca	FvH4_6g06890 FvH4_6g06890
malus_domestica	MD04G1197700.v1.1
prunus_persica	Prupe.6G318100_v2.0.a1 Prupe.6G318100_v2.0.a1
pyrus_communis	pycom04g17500
rosa_chinensis	RchiOBHm_Chr3g0456421
rosa_laevigata	RLG00000025306
rosa_multiflora	Rmu_sc0002607.1_g000018 Rmu_sc0010747.1_g000009 Rmu_sc0020202.1_g000004
rosa_roxburghii	Rroxscaffold_6G00422750
rosa_rugosa	Rorug03G0012800
rosa_samantha	Rh3AG073300 Rh3AG073400 Rh3BG075200 Rh3CG074800 Rh3DG076600 Rh5DG534700 Rh5DG534800
rosa_wichuraiana	Rw3G006280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	711
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccI	GTMKAC	2 cut(s)	570, 603
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	2 cut(s)	108, 489
AfeI	AGCGCT	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflIII	ACRYGT	2 cut(s)	294, 610
AgsI	TTSAA	3 cut(s)	318, 539, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	3 cut(s)	6, 123, 687
AluI	AGCT	3 cut(s)	6, 123, 687
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	2 cut(s)	91, 610
Alw44I	GTGCAC	1 cut(s)	750
AlwI	GGATC	1 cut(s)	318
Aor51HI	AGCGCT	1 cut(s)	469
AoxI	GGCC	4 cut(s)	108, 489, 766, 794
ApaLI	GTGCAC	1 cut(s)	750
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	470
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	441
BaeGI	GKGCMC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	635
Bbv12I	GWGCWC	1 cut(s)	754
BccI	CCATC	5 cut(s)	410, 653, 657, 661, 692
BceAI	ACGGC	2 cut(s)	127, 210
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	91, 610
BfaI	CTAG	1 cut(s)	413
BfoI	RGCGCY	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	60
BmrI	ACTGGG	1 cut(s)	689
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	689
BpiI	GAAGAC	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	6, 595
BpuMI	CCSGG	1 cut(s)	60
Bsa29I	ATCGAT	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	684
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	409, 516
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	754
BshFI	GGCC	4 cut(s)	110, 491, 768, 796
BshNI	GGYRCC	1 cut(s)	425
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	91, 610
BsnI	GGCC	4 cut(s)	110, 491, 768, 796
Bso31I	GGTCTC	1 cut(s)	610
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp143I	GATC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	105
BspANI	GGCC	4 cut(s)	110, 491, 768, 796
BspCNI	CTCAG	2 cut(s)	408, 517
BspDI	ATCGAT	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	427
BspPI	GGATC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	1 cut(s)	310
BssNAI	GTATAC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	105
Bst1107I	GTATAC	1 cut(s)	571
Bst4CI	ACNGT	2 cut(s)	460, 568
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	395, 525
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	2 cut(s)	91, 610
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 497
BstNSI	RCATGY	2 cut(s)	72, 298
BstSCI	CCNGG	1 cut(s)	58
BstSLI	GKGCMC	1 cut(s)	754
BstV2I	GAAGAC	1 cut(s)	635
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BstZ17I	GTATAC	1 cut(s)	571
Bsu15I	ATCGAT	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	110, 491, 768, 796
BsuTUI	ATCGAT	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	6 cut(s)	138, 194, 668, 672, 707, 724
BtsIMutI	CAGTG	1 cut(s)	564
Cac8I	GCNNGC	1 cut(s)	331
CfoI	GCGC	1 cut(s)	470
ClaI	ATCGAT	1 cut(s)	240
CviAII	CATG	4 cut(s)	69, 106, 295, 430
DdeI	CTNAG	2 cut(s)	395, 525
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	2 cut(s)	108, 489
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	610
Eco47III	AGCGCT	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	72, 109, 298, 433
FalI	AAGNNNNNCTT	6 cut(s)	107, 139, 627, 659, 753, 785
FatI	CATG	4 cut(s)	68, 105, 294, 429
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	570, 603
FokI	GGATG	6 cut(s)	145, 181, 675, 679, 714, 731
FspBI	CTAG	1 cut(s)	413
GlaI	GCGC	1 cut(s)	469
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	110, 491, 768, 796
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	1 cut(s)	470
Hin1II	CATG	4 cut(s)	72, 109, 298, 433
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	97, 368, 512
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	571, 604, 752
Hpy188I	TCNGA	5 cut(s)	148, 367, 398, 526, 588
Hpy188III	TCNNGA	5 cut(s)	23, 168, 372, 632, 647
Hpy8I	GTNNAC	3 cut(s)	571, 604, 752
Hpy99I	CGWCG	2 cut(s)	97, 148
HpyAV	CCTTC	3 cut(s)	369, 531, 583
HpyCH4III	ACNGT	2 cut(s)	460, 568
HpyCH4IV	ACGT	2 cut(s)	610, 640
HpyCH4V	TGCA	8 cut(s)	68, 305, 333, 380, 500, 581, 752, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 497
HpyF3I	CTNAG	2 cut(s)	395, 525
HpySE526I	ACGT	2 cut(s)	610, 640
Hsp92II	CATG	4 cut(s)	72, 109, 298, 433
HspAI	GCGC	1 cut(s)	468
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	10, 684
LpnPI	CCDG	8 cut(s)	73, 181, 202, 264, 391, 610, 617, 665
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	2 cut(s)	610, 640
MaeIII	GTNAC	2 cut(s)	175, 516
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	3 cut(s)	635, 647, 736
MfeI	CAATTG	1 cut(s)	440
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	491
MluCI	AATT	6 cut(s)	159, 318, 440, 547, 783, 803
MluNI	TGGCCA	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	3 cut(s)	126, 222, 332
MnlI	CCTC	7 cut(s)	30, 88, 100, 348, 373, 376, 772
Mox20I	TGGCCA	1 cut(s)	491
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	642
MscI	TGGCCA	1 cut(s)	491
MseI	TTAA	2 cut(s)	299, 814
Msp20I	TGGCCA	1 cut(s)	491
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	440
MwoI	GCNNNNNNNGC	2 cut(s)	386, 497
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	72, 109, 298, 433
NlaIV	GGNNCC	1 cut(s)	427
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	2 cut(s)	72, 298
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	642
PfeI	GAWTC	2 cut(s)	97, 368
PflMI	CCANNNNNTGG	1 cut(s)	408
PfoI	TCCNGGA	1 cut(s)	58
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
PscI	ACATGT	1 cut(s)	294
PsiI	TTATAA	1 cut(s)	711
PspN4I	GGNNCC	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	299, 814
Sau3AI	GATC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	21, 574
SmoI	CTYRAG	2 cut(s)	21, 574
Sse9I	AATT	6 cut(s)	159, 318, 440, 547, 783, 803
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	460, 568
TaiI	ACGT	2 cut(s)	613, 643
TaqI	TCGA	3 cut(s)	33, 95, 240
TasI	AATT	6 cut(s)	159, 318, 440, 547, 783, 803
TfiI	GAWTC	2 cut(s)	97, 368
Tru1I	TTAA	2 cut(s)	299, 814
Tru9I	TTAA	2 cut(s)	299, 814
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	183, 202, 446
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	408
VneI	GTGCAC	1 cut(s)	750
XceI	RCATGY	2 cut(s)	72, 298
XmiI	GTMKAC	2 cut(s)	570, 603
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	413
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.