AT1G56250

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007714
Physical Location & Seq
Reverse (-)
21061522 .. 21063047
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G56250.1

Sequence Viewer

Length: 849 bp
ATGATGATGTTACCAGAAGCATGCATAGCCAACATCCTTGCCTTCACATCTCCGGCGGATGCATTCTCGTCGTCAGAGGTCTCTTCGGTTTTCCGGTTAGCCGGAGACTCTGATTTCGTATGGGAAAAGTTTCTACCATCGGATTACAAAAGCCTCATCTCTCAATCTACTGATCATCATTGGAATATTTCTTCCAAAAAAGAAATTTATCGATGTTTATGTGACTCTCTTCTCATCGATAATGCTCGAAAGCTGTTCAAGATCAATAAATTTTCCGGAAAAATTTCCTACGTTTTATCAGCAAGAGATATTTCCATAACACATAGTGACCATGCATCTTACTGGTCTTGGAGCAATGTCTCAGATTCTAGATTCTCGGAGTCAGCTGAACTTATAATAACCGATCGTTTAGAAATCGAGGGTAAAATCCAAACCAGAGTTTTATCAGCAAACACAAGATACGGAGCATATCTCATAGTGAAAGTAACAAAAGGCGCCTACGGACTTGACCTAGTTCCGGCAGAGACTTCGATTAAATCTAAAAACGGTCAAATTAGTAAGAGTGCAACTTATCTATGTTGCTTGGATGAGAAAAAACAACAAATGAAGCGGCTATTTTACGGGAACCGAGAAGAGCGAATGGCGATGACTGTGGAAGCGGTTGGCGGGGACGGGAAAAGGAGAGAGCCGAAATGTAGAGATGACGGATGGATGGAGATTGAGTTAGGAGAGTTTGAGACACGAGAAGGAGAAGATGATGAAGTCAATATGACTCTTACAGAGGTGAAAGGATATCAACTAAAAGGTGGCATTTTGATTGATGGTATTGAAGTGAGGCCTAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0030246 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PP2

Protein Analysis

282

Amino Acids

31.84

Weight (kDa)

5.74

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2 PF14299 94 - 280 1.5e-46 Phloem protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 395
AccB1I GGYRCC 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 4 cut(s) 56, 610, 659, 666
AcsI RAATTY 3 cut(s) 204, 269, 282
AcyI GRCGYC 1 cut(s) 495
AdeI CACNNNGTG 1 cut(s) 326
AfiI CCNNNNNNNGG 1 cut(s) 517
AgsI TTSAA 2 cut(s) 259, 830
AluBI AGCT 2 cut(s) 253, 386
AluI AGCT 2 cut(s) 253, 386
Alw26I GTCTC 5 cut(s) 85, 99, 364, 518, 731
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 1 cut(s) 836
ApoI RAATTY 3 cut(s) 204, 269, 282
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
Asp700I GAANNNNTTC 2 cut(s) 129, 283
AspLEI GCGC 1 cut(s) 497
AsuHPI GGTGA 1 cut(s) 796
BanI GGYRCC 1 cut(s) 494
BauI CACGAG 1 cut(s) 741
BccI CCATC 4 cut(s) 145, 702, 706, 815
BcgI CGANNNNNNTGC 4 cut(s) 51, 85, 510, 544
BclI TGATCA 1 cut(s) 172
BcoDI GTCTC 5 cut(s) 85, 99, 364, 518, 731
BfaI CTAG 2 cut(s) 369, 512
BfoI RGCGCY 1 cut(s) 498
BisI GCNGC 1 cut(s) 611
BlsI GCNGC 1 cut(s) 612
BmiI GGNNCC 2 cut(s) 496, 626
BmsI GCATC 2 cut(s) 49, 344
BplI GAGNNNNNCTC 2 cut(s) 456, 488
Bsa29I ATCGAT 2 cut(s) 211, 237
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 85
BsaWI WCCGGW 2 cut(s) 93, 275
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 517
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 361
BseAI TCCGGA 1 cut(s) 275
BseCI ATCGAT 2 cut(s) 211, 237
BseGI GGATG 5 cut(s) 33, 64, 592, 713, 717
BseLI CCNNNNNNNGG 1 cut(s) 517
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 406
BshFI GGCC 1 cut(s) 838
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 2 cut(s) 211, 237
BsiEI CGRYCG 1 cut(s) 406
BsiSI CCGG 5 cut(s) 53, 94, 102, 276, 518
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 1 cut(s) 517
BsmAI GTCTC 5 cut(s) 85, 99, 364, 518, 731
BsmFI GGGAC 1 cut(s) 683
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 838
Bso31I GGTCTC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 3 cut(s) 172, 261, 403
BspACI CCGC 4 cut(s) 56, 610, 659, 666
BspANI GGCC 1 cut(s) 838
BspCNI CTCAG 1 cut(s) 374
BspDI ATCGAT 2 cut(s) 211, 237
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 2 cut(s) 496, 626
BspQI GCTCTTC 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 1 cut(s) 347
BssMI GATC 3 cut(s) 172, 261, 403
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 741
Bst2BI CACGAG 1 cut(s) 741
Bst4CI ACNGT 2 cut(s) 548, 652
Bst6I CTCTTC 3 cut(s) 88, 234, 627
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 361
BstF5I GGATG 5 cut(s) 33, 64, 592, 713, 717
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 3 cut(s) 175, 264, 406
BstMAI GTCTC 5 cut(s) 85, 99, 364, 518, 731
BstMBI GATC 3 cut(s) 172, 261, 403
BstMCI CGRYCG 1 cut(s) 406
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 24
Bsu15I ATCGAT 2 cut(s) 211, 237
BsuRI GGCC 1 cut(s) 838
BsuTUI ATCGAT 2 cut(s) 211, 237
BtgZI GCGATG 1 cut(s) 659
BtsCI GGATG 5 cut(s) 33, 64, 592, 713, 717
Cac8I GCNNGC 1 cut(s) 22
CfoI GCGC 1 cut(s) 497
ClaI ATCGAT 2 cut(s) 211, 237
CviAII CATG 2 cut(s) 21, 332
CviJI RGCY 8 cut(s) 29, 101, 153, 253, 386, 613, 688, 838
CviKI_1 RGCY 8 cut(s) 29, 101, 153, 253, 386, 613, 688, 838
DdeI CTNAG 1 cut(s) 361
DinI GGCGCC 1 cut(s) 496
DpnI GATC 3 cut(s) 174, 263, 405
DpnII GATC 3 cut(s) 172, 261, 403
DraIII CACNNNGTG 1 cut(s) 326
Eam1104I CTCTTC 3 cut(s) 88, 234, 627
EarI CTCTTC 3 cut(s) 88, 234, 627
EciI GGCGGA 1 cut(s) 71
Eco147I AGGCCT 1 cut(s) 838
Eco31I GGTCTC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 794
EcoRV GATATC 1 cut(s) 794
EcoT22I ATGCAT 3 cut(s) 26, 64, 337
EgeI GGCGCC 1 cut(s) 496
EheI GGCGCC 1 cut(s) 496
FaeI CATG 2 cut(s) 24, 335
FaqI GGGAC 1 cut(s) 683
FatI CATG 2 cut(s) 20, 331
FauI CCCGC 1 cut(s) 659
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 611
FokI GGATG 5 cut(s) 20, 71, 599, 720, 724
Fsp4HI GCNGC 1 cut(s) 611
FspBI CTAG 2 cut(s) 369, 512
GlaI GCGC 1 cut(s) 496
GluI GCNGC 1 cut(s) 611
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 1 cut(s) 838
HapII CCGG 5 cut(s) 53, 94, 102, 276, 518
HhaI GCGC 1 cut(s) 497
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 2 cut(s) 24, 335
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 6 cut(s) 107, 224, 365, 372, 380, 772
HpaII CCGG 5 cut(s) 53, 94, 102, 276, 518
HphI GGTGA 1 cut(s) 796
Hpy188I TCNGA 5 cut(s) 76, 112, 142, 364, 379
Hpy188III TCNNGA 3 cut(s) 259, 276, 369
Hpy99I CGWCG 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 52, 740
HpyCH4III ACNGT 2 cut(s) 548, 652
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 4 cut(s) 24, 62, 335, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 2 cut(s) 24, 335
HspAI GCGC 1 cut(s) 495
KasI GGCGCC 1 cut(s) 494
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 3 cut(s) 172, 261, 403
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 2 cut(s) 351, 464
LpnPI CCDG 8 cut(s) 27, 66, 107, 115, 289, 328, 448, 531
LweI GCATC 2 cut(s) 49, 344
MaeI CTAG 2 cut(s) 369, 512
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 9, 221, 326, 484
MalI GATC 3 cut(s) 174, 263, 405
MboI GATC 3 cut(s) 172, 261, 403
MboII GAAGA 5 cut(s) 75, 183, 221, 644, 764
MluCI AATT 4 cut(s) 204, 269, 282, 552
Mly113I GGCGCC 1 cut(s) 495
MlyI GAGTC 4 cut(s) 101, 218, 389, 766
MnlI CCTC 5 cut(s) 70, 164, 412, 775, 828
Mph1103I ATGCAT 3 cut(s) 26, 64, 337
MroI TCCGGA 1 cut(s) 275
MroXI GAANNNNTTC 2 cut(s) 129, 283
MseI TTAA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 5 cut(s) 53, 94, 102, 276, 518
Mva1269I GAATGC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 26
NarI GGCGCC 1 cut(s) 495
NdeII GATC 3 cut(s) 172, 261, 403
NlaIII CATG 2 cut(s) 24, 335
NlaIV GGNNCC 2 cut(s) 496, 626
NmuCI GTSAC 2 cut(s) 221, 326
NsiI ATGCAT 3 cut(s) 26, 64, 337
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PceI AGGCCT 1 cut(s) 838
PciSI GCTCTTC 1 cut(s) 627
PctI GAATGC 1 cut(s) 62
PdmI GAANNNNTTC 2 cut(s) 129, 283
PfeI GAWTC 2 cut(s) 365, 372
PkrI GCNGC 1 cut(s) 612
Ple19I CGATCG 1 cut(s) 406
PleI GAGTC 4 cut(s) 101, 218, 388, 766
PluTI GGCGCC 1 cut(s) 498
PpsI GAGTC 4 cut(s) 101, 218, 388, 766
PsiI TTATAA 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 496, 626
PvuI CGATCG 1 cut(s) 406
PvuII CAGCTG 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 1 cut(s) 611
Sau3AI GATC 3 cut(s) 172, 261, 403
SchI GAGTC 4 cut(s) 101, 218, 389, 766
SetI ASST 7 cut(s) 81, 255, 294, 388, 513, 786, 808
SfaNI GCATC 2 cut(s) 49, 344
SfoI GGCGCC 1 cut(s) 496
SphI GCATGC 1 cut(s) 24
Sse9I AATT 4 cut(s) 204, 269, 282, 552
SseBI AGGCCT 1 cut(s) 838
SsiI CCGC 4 cut(s) 56, 610, 659, 666
SspDI GGCGCC 1 cut(s) 494
SspI AATATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 369, 512
StuI AGGCCT 1 cut(s) 838
TaaI ACNGT 2 cut(s) 548, 652
TaiI ACGT 1 cut(s) 294
TaqI TCGA 5 cut(s) 211, 237, 247, 417, 530
TasI AATT 4 cut(s) 204, 269, 282, 552
TauI GCSGC 1 cut(s) 613
TfiI GAWTC 2 cut(s) 365, 372
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 2 cut(s) 221, 326
Tsp45I GTSAC 2 cut(s) 221, 326
TspDTI ATGAA 2 cut(s) 620, 774
TspGWI ACGGA 3 cut(s) 477, 516, 720
XapI RAATTY 3 cut(s) 204, 269, 282
XbaI TCTAGA 1 cut(s) 368
XceI RCATGY 1 cut(s) 24
XmnI GAANNNNTTC 2 cut(s) 129, 283
XspI CTAG 2 cut(s) 369, 512
Zsp2I ATGCAT 3 cut(s) 26, 64, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.