AT1G09160

protein phosphatase 2C 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005594
Physical Location & Seq
Reverse (-)
2952597 .. 2955745
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09160.2

Sequence Viewer

Length: 1287 bp
ATGAGCGTGTCAAAAGCATCGAGGACGCAACATTCGCTCGTTCCTCTTGCGACCCTGATTGGTAGGGAGCTGAGGAGCGAGAAAGTAGAGAAGCCTTTTGTCAAGTATGGTCAAGCAGCTCTCGCTAAGAAAGGAGAGGACTACTTTTTGATCAAAACTGACTGTGAAAGGGTACCTGGTGATCCATCATCGGCTTTTTCAGTTTTCGGGATATTTGACGGACACAATGGTAATTCAGCTGCCATATATACTAAGGAACATCTTCTGGAAAACGTGGTGAGTGCAATTCCTCAAGGCGCAAGCAGGGATGAGTGGCTTCAAGCTCTTCCTAGGGCTTTAGTTGCTGGCTTTGTGAAAACTGACATTGAATTTCAGCAGAAAGGGGAAACTTCAGGAACAACCGTGACTTTTGTTATAATTGATGGTTGGACTATTACTGTTGCTTCTGTTGGTGACTCGCGCTGCATATTGGACACCCAAGGTGGTGTGGTTTCTCTACTGACTGTTGATCACAGGCTAGAAGAGAATGTTGAAGAAAGAGAACGCATAACTGCTAGTGGAGGTGAGGTCGGAAGACTCAATGTATTTGGTGGCAATGAGGTCGGCCCACTACGATGCTGGCCTGGTGGTTTATGTCTTTCGAGGTCCATTGGTGATACGGATGTGGGAGAATTTATTGTCCCTATACCACACGTTAAGCAAGTGAAACTTCCTGATGCTGGAGGGAGACTCATCATAGCTTCAGATGGTATATGGGATATACTGTCTTCTGATGTGGCTGCCAAAGCTTGTCGTGGTTTATCTGCCGATCTTGCTGCTAAACTTGTTGTTAAGGAAGCATTGCGAACAAAAGGGTTGAAAGATGATACGACTTGTGTAGTCGTTGACATAGTTCCATCTGGTCATCTTTCCTTGGCTCCAGCACCCATGAAGAAACAGAACCCATTTACCTCATTTCTTTCAAGGAAAAACCATATGGATACCAACAACAAAAATGGCAACAAGCTTTCTGCTGTTGGAGTTGTAGAAGAATTGTTTGAAGAAGGTTCTGCTGTGCTTGCAGATAGATTGGGAAAGGATCTTCTCTCAAATACGGAAACTGGGCTCTTAAAATGTGCTGTATGCCAAATAGATGAATCTCCGAGTGAAGATTTATCAAGCAATGGGGGTTCCATCATTTCCTCAGCATCTAAACGATGGGAAGGTCCCTTCCTATGCACAATATGCAAGAAAAAGAAAGACGCCATGGAAGGAAAAAGACCAAGCAAAGGTTCAGTGACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

428

Amino Acids

45.78

Weight (kDa)

6.23

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 61 - 282 4.7e-34 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 172
AccII CGCG 1 cut(s) 460
AclWI GGATC 2 cut(s) 176, 1086
AcsI RAATTY 2 cut(s) 368, 671
AcuI CTGAAG 2 cut(s) 375, 726
AcyI GRCGYC 1 cut(s) 1242
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 719, 1268
AflIII ACRYGT 1 cut(s) 691
AgsI TTSAA 6 cut(s) 320, 368, 533, 859, 963, 1040
AjnI CCWGG 2 cut(s) 175, 622
AjuI GAANNNNNNNTTGG 2 cut(s) 1255, 1287
AluBI AGCT 7 cut(s) 70, 119, 239, 323, 740, 788, 1006
AluI AGCT 7 cut(s) 70, 119, 239, 323, 740, 788, 1006
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 2 cut(s) 176, 1086
AoxI GGCC 2 cut(s) 604, 620
ApeKI GCWGC 5 cut(s) 116, 239, 462, 779, 815
ApoI RAATTY 2 cut(s) 368, 671
ArsI GACNNNNNNTTYG 2 cut(s) 16, 48
Asp700I GAANNNNTTC 1 cut(s) 261
Asp718I GGTACC 1 cut(s) 172
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 2 cut(s) 299, 462
AspS9I GGNCC 3 cut(s) 605, 645, 1205
AsuHPI GGTGA 5 cut(s) 191, 289, 464, 575, 665
AvaII GGWCC 2 cut(s) 645, 1205
AvrII CCTAGG 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 648, 681
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 1107
BbsI GAAGAC 2 cut(s) 580, 759
BbvCI CCTCAGC 2 cut(s) 71, 1183
BbvI GCAGC 5 cut(s) 128, 226, 449, 766, 802
BccI CCATC 6 cut(s) 193, 416, 740, 904, 1181, 1191
BcgI CGANNNNNNTGC 4 cut(s) 583, 617, 797, 831
BciT130I CCWGG 2 cut(s) 177, 624
BciVI GTATCC 1 cut(s) 973
BclI TGATCA 2 cut(s) 150, 508
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 3 cut(s) 330, 518, 555
BfuI GTATCC 1 cut(s) 973
BisI GCNGC 5 cut(s) 117, 240, 463, 780, 816
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 5 cut(s) 118, 241, 464, 781, 817
Bme1390I CCNGG 2 cut(s) 177, 624
Bme18I GGWCC 2 cut(s) 645, 1205
BmgT120I GGNCC 3 cut(s) 605, 645, 1205
BmiI GGNNCC 4 cut(s) 174, 918, 1171, 1207
BmrFI CCNGG 2 cut(s) 177, 624
BmrI ACTGGG 1 cut(s) 1110
BmsI GCATC 4 cut(s) 26, 605, 706, 1196
BmuI ACTGGG 1 cut(s) 1110
BpiI GAAGAC 2 cut(s) 580, 759
BplI GAGNNNNNCTC 2 cut(s) 714, 746
BpmI CTGGAG 2 cut(s) 741, 903
Bpu10I CCTNAGC 2 cut(s) 71, 1183
BpuEI CTTGAG 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 1242
BsaJI CCNNGG 4 cut(s) 329, 478, 912, 1245
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 1268
Bse1I ACTGG 1 cut(s) 1105
Bse3DI GCAATG 3 cut(s) 601, 839, 1168
BseBI CCWGG 2 cut(s) 177, 624
BseDI CCNNGG 4 cut(s) 329, 478, 912, 1245
BseGI GGATG 2 cut(s) 313, 667
BseLI CCNNNNNNNGG 2 cut(s) 719, 1268
BseMI GCAATG 3 cut(s) 601, 839, 1168
BseMII CTCAG 2 cut(s) 62, 1197
BseNI ACTGG 1 cut(s) 1105
BseRI GAGGAG 1 cut(s) 88
BseXI GCAGC 5 cut(s) 128, 226, 449, 766, 802
Bsh1236I CGCG 1 cut(s) 460
BshFI GGCC 2 cut(s) 606, 622
BshNI GGYRCC 1 cut(s) 172
BslFI GGGAC 2 cut(s) 665, 1191
BslI CCNNNNNNNGG 2 cut(s) 719, 1268
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 665, 1191
BsnI GGCC 2 cut(s) 606, 622
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 5 cut(s) 150, 181, 508, 808, 1078
Bsp19I CCATGG 1 cut(s) 1245
BspANI GGCC 2 cut(s) 606, 622
BspCNI CTCAG 2 cut(s) 63, 1196
BspFNI CGCG 1 cut(s) 460
BspLI GGNNCC 4 cut(s) 174, 918, 1171, 1207
BspPI GGATC 2 cut(s) 176, 1086
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 3 cut(s) 601, 839, 1168
BsrI ACTGG 1 cut(s) 1105
BssECI CCNNGG 4 cut(s) 329, 478, 912, 1245
BssMI GATC 5 cut(s) 150, 181, 508, 808, 1078
BssNI GRCGYC 1 cut(s) 1242
BssT1I CCWWGG 4 cut(s) 329, 478, 912, 1245
Bst2UI CCWGG 2 cut(s) 177, 624
Bst4CI ACNGT 5 cut(s) 164, 403, 439, 505, 765
Bst6I CTCTTC 2 cut(s) 330, 516
BstACI GRCGYC 1 cut(s) 1242
BstAPI GCANNNNNTGC 1 cut(s) 1224
BstC8I GCNNGC 4 cut(s) 301, 346, 620, 1059
BstDEI CTNAG 4 cut(s) 71, 126, 252, 1183
BstDSI CCRYGG 1 cut(s) 1245
BstF5I GGATG 2 cut(s) 313, 667
BstFNI CGCG 1 cut(s) 460
BstHHI GCGC 2 cut(s) 299, 462
BstKTI GATC 5 cut(s) 153, 184, 511, 811, 1081
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 5 cut(s) 150, 181, 508, 808, 1078
BstMWI GCNNNNNNNGC 7 cut(s) 34, 122, 341, 785, 812, 1058, 1224
BstNI CCWGG 2 cut(s) 177, 624
BstSCI CCNGG 2 cut(s) 175, 622
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 5 cut(s) 128, 226, 449, 766, 802
BstV2I GAAGAC 2 cut(s) 580, 759
BstX2I RGATCY 1 cut(s) 1078
BstYI RGATCY 1 cut(s) 1078
BsuI GTATCC 1 cut(s) 973
BsuRI GGCC 2 cut(s) 606, 622
BtgI CCRYGG 1 cut(s) 1245
BtsCI GGATG 2 cut(s) 313, 667
BtsIMutI CAGTG 1 cut(s) 1281
Cac8I GCNNGC 4 cut(s) 301, 346, 620, 1059
CfoI GCGC 2 cut(s) 299, 462
Cfr13I GGNCC 3 cut(s) 605, 645, 1205
CseI GACGC 2 cut(s) 34, 1250
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 1 cut(s) 173
CviAII CATG 2 cut(s) 928, 1246
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 4 cut(s) 71, 126, 252, 1183
DpnI GATC 5 cut(s) 152, 183, 510, 810, 1080
DpnII GATC 5 cut(s) 150, 181, 508, 808, 1078
Eam1104I CTCTTC 2 cut(s) 330, 516
EarI CTCTTC 2 cut(s) 330, 516
Eco130I CCWWGG 4 cut(s) 329, 478, 912, 1245
Eco24I GRGCYC 1 cut(s) 1107
Eco47I GGWCC 2 cut(s) 645, 1205
Eco57I CTGAAG 2 cut(s) 375, 726
EcoO109I RGGNCCY 1 cut(s) 1205
EcoRII CCWGG 2 cut(s) 175, 622
EcoT14I CCWWGG 4 cut(s) 329, 478, 912, 1245
EcoT38I GRGCYC 1 cut(s) 1107
ErhI CCWWGG 4 cut(s) 329, 478, 912, 1245
FaeI CATG 2 cut(s) 931, 1249
FalI AAGNNNNNCTT 2 cut(s) 693, 725
FaqI GGGAC 2 cut(s) 665, 1191
FatI CATG 2 cut(s) 927, 1245
FauNDI CATATG 1 cut(s) 975
FbaI TGATCA 2 cut(s) 150, 508
Fnu4HI GCNGC 5 cut(s) 117, 240, 463, 780, 816
FokI GGATG 2 cut(s) 320, 674
FriOI GRGCYC 1 cut(s) 1107
Fsp4HI GCNGC 5 cut(s) 117, 240, 463, 780, 816
FspBI CTAG 3 cut(s) 330, 518, 555
GlaI GCGC 2 cut(s) 298, 461
GluI GCNGC 5 cut(s) 117, 240, 463, 780, 816
GsuI CTGGAG 2 cut(s) 741, 903
HaeIII GGCC 2 cut(s) 606, 622
HgaI GACGC 2 cut(s) 34, 1250
HhaI GCGC 2 cut(s) 299, 462
Hin1I GRCGYC 1 cut(s) 1242
Hin1II CATG 2 cut(s) 931, 1249
Hin6I GCGC 2 cut(s) 297, 460
HinP1I GCGC 2 cut(s) 297, 460
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 786, 1004
HinfI GANTC 4 cut(s) 455, 576, 729, 1136
HphI GGTGA 5 cut(s) 191, 289, 464, 575, 665
Hpy166II GTNNAC 1 cut(s) 886
Hpy188I TCNGA 4 cut(s) 572, 745, 772, 1143
Hpy188III TCNNGA 4 cut(s) 208, 266, 393, 713
Hpy8I GTNNAC 1 cut(s) 886
HpyAV CCTTC 4 cut(s) 1037, 1196, 1219, 1244
HpyCH4III ACNGT 5 cut(s) 164, 403, 439, 505, 765
HpyCH4IV ACGT 2 cut(s) 273, 693
HpyCH4V TGCA 5 cut(s) 284, 465, 1061, 1218, 1227
HpyF10VI GCNNNNNNNGC 7 cut(s) 34, 122, 341, 785, 812, 1058, 1224
HpyF3I CTNAG 4 cut(s) 71, 126, 252, 1183
HpySE526I ACGT 2 cut(s) 273, 693
Hsp92I GRCGYC 1 cut(s) 1242
Hsp92II CATG 2 cut(s) 931, 1249
HspAI GCGC 2 cut(s) 297, 460
KpnI GGTACC 1 cut(s) 176
Ksp22I TGATCA 2 cut(s) 150, 508
Kzo9I GATC 5 cut(s) 150, 181, 508, 808, 1078
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 3 cut(s) 67, 75, 922
Lsp1109I GCAGC 5 cut(s) 128, 226, 449, 766, 802
LweI GCATC 4 cut(s) 26, 605, 706, 1196
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 3 cut(s) 330, 518, 555
MaeII ACGT 2 cut(s) 273, 693
MaeIII GTNAC 3 cut(s) 403, 452, 1276
MalI GATC 5 cut(s) 152, 183, 510, 810, 1080
MboI GATC 5 cut(s) 150, 181, 508, 808, 1078
MflI RGATCY 1 cut(s) 1078
MhlI GDGCHC 1 cut(s) 1107
MluCI AATT 6 cut(s) 232, 285, 368, 417, 671, 1031
MlyI GAGTC 3 cut(s) 449, 570, 723
MmeI TCCRAC 3 cut(s) 407, 550, 997
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 3 cut(s) 696, 831, 1109
MslI CAYNNNNRTG 1 cut(s) 613
MspA1I CMGCKG 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 177, 624
MvaI CCWGG 2 cut(s) 177, 624
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 7 cut(s) 34, 122, 341, 785, 812, 1058, 1224
NcoI CCATGG 1 cut(s) 1245
NdeI CATATG 1 cut(s) 975
NdeII GATC 5 cut(s) 150, 181, 508, 808, 1078
NlaIII CATG 2 cut(s) 931, 1249
NlaIV GGNNCC 4 cut(s) 174, 918, 1171, 1207
NmuCI GTSAC 3 cut(s) 403, 452, 1276
PciSI GCTCTTC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 1136
PkrI GCNGC 5 cut(s) 118, 241, 464, 781, 817
PleI GAGTC 3 cut(s) 449, 570, 723
PpsI GAGTC 3 cut(s) 449, 570, 723
PpuMI RGGWCCY 1 cut(s) 1205
PsiI TTATAA 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 1205
Psp6I CCWGG 2 cut(s) 175, 622
PspGI CCWGG 2 cut(s) 175, 622
PspN4I GGNNCC 4 cut(s) 174, 918, 1171, 1207
PspPI GGNCC 3 cut(s) 605, 645, 1205
PspPPI RGGWCCY 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 1078
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 3 cut(s) 696, 831, 1109
SatI GCNGC 5 cut(s) 117, 240, 463, 780, 816
Sau3AI GATC 5 cut(s) 150, 181, 508, 808, 1078
Sau96I GGNCC 3 cut(s) 605, 645, 1205
SchI GAGTC 3 cut(s) 449, 570, 723
ScrFI CCNGG 2 cut(s) 177, 624
SduI GDGCHC 1 cut(s) 1107
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 4 cut(s) 26, 605, 706, 1196
SinI GGWCC 2 cut(s) 645, 1205
SmiMI CAYNNNNRTG 1 cut(s) 613
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 6 cut(s) 232, 285, 368, 417, 671, 1031
SspMI CTAG 3 cut(s) 330, 518, 555
StyD4I CCNGG 2 cut(s) 175, 622
StyI CCWWGG 4 cut(s) 329, 478, 912, 1245
TaaI ACNGT 5 cut(s) 164, 403, 439, 505, 765
TaiI ACGT 2 cut(s) 276, 696
TaqI TCGA 2 cut(s) 20, 641
TasI AATT 6 cut(s) 232, 285, 368, 417, 671, 1031
TfiI GAWTC 1 cut(s) 1136
Tru1I TTAA 3 cut(s) 696, 831, 1109
Tru9I TTAA 3 cut(s) 696, 831, 1109
TscAI CASTG 1 cut(s) 1281
TseFI GTSAC 3 cut(s) 403, 452, 1276
TseI GCWGC 5 cut(s) 116, 239, 462, 779, 815
Tsp45I GTSAC 3 cut(s) 403, 452, 1276
TspDTI ATGAA 2 cut(s) 944, 1149
TspGWI ACGGA 3 cut(s) 234, 674, 1109
TspRI CASTG 1 cut(s) 1281
VpaK11BI GGWCC 2 cut(s) 645, 1205
XapI RAATTY 2 cut(s) 368, 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XmaJI CCTAGG 1 cut(s) 329
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 3 cut(s) 330, 518, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.