Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017908.1

Orthogroup ID

OG0005594

Physical Location & Seq

Genomic Coordinates Forward (+)

18170 .. 20074

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017908.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggtgtttcaccccccattcaccattggattttttctttgctattggctaatgtcccatttcggtggcatcagtttcttcccgcggttattcagattttatcttctcgatatgacacttttccctacctttttacttcgggcagcagcggcggcggcggcaacggcgatggtggcacggatggctttggtggcggctgttgtattgtaggagatgatctttcaaatgcagggggaagacttataatagcttctgatatggctgccaagtcttgccggggattgcctgcagagcttgctgcaaagttggtcgttaaggaggctctgaggtcaaggggtctgaaagatgatacaacctgcgtagttgttgacataatcccatcagaccgtcctgtcttgcctccaactccgaggaagaaacaaagcatgctcacttcacttatttttgggaagaaaagtcagaatgggagcaaaacaaataagctttcagcggtgggagttgtggaggaactgtttgaagaaggttcagcaatgctcgctgaaaggttgggtaaggatattcctttggatgcaaattctggtattttccggtgtgcagtctgccaagttgatcagccccaatcagaaggtttatcagtaaattctggaccttttttctcaccatcatcaaagccatgggaaggccccttcctctgcacaatctgtcggaaaaagaaagacaccatggaaggaaaaagaatgagcacacccacagtggctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

254

Amino Acids

27.05

Weight (kDa)

8.61

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09160 AT1G09160
fragaria_vesca	FvH4_6g07050
malus_domestica	MD04G1196500.v1.1 MD12G1209500.v1.1
prunus_persica	Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1
pyrus_communis	pycom04g17390 pycom12g19680
rosa_chinensis	RchiOBHm_Chr3g0456591
rosa_laevigata	RLG00000025289
rosa_multiflora	Rmu_co8313957.1_g000001 Rmu_sc0000133.1_g000039 Rmu_sc0017908.1_g000001 Rmu_sc0017908.1_g000007
rosa_roxburghii	Rroxscaffold_6G00422600
rosa_rugosa	Rorug03G0014200 Rorug03G0014300
rosa_samantha	Rh3AG074800 Rh3BG076700 Rh3CG076300 Rh3CG076500 Rh3DG078500
rosa_wichuraiana	Rw3G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AasI	GACNNNNNNGTC	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	365
AccII	CGCG	1 cut(s)	86
AciI	CCGC	8 cut(s)	84, 86, 150, 153, 156, 159, 195, 491
AcsI	RAATTY	2 cut(s)	574, 640
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	2 cut(s)	225, 518
AluBI	AGCT	3 cut(s)	251, 295, 484
AluI	AGCT	3 cut(s)	251, 295, 484
Alw21I	GWGCWC	1 cut(s)	746
AoxI	GGCC	1 cut(s)	682
ApeKI	GCWGC	4 cut(s)	144, 147, 263, 299
ApoI	RAATTY	2 cut(s)	574, 640
AspS9I	GGNCC	2 cut(s)	647, 683
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	3, 14, 651
AvaII	GGWCC	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	746
BbvI	GCAGC	4 cut(s)	156, 159, 250, 286
BccI	CCATC	4 cut(s)	164, 176, 388, 670
BceAI	ACGGC	1 cut(s)	181
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	9 cut(s)	145, 148, 151, 154, 157, 160, 196, 264, 300
BlsI	GCNGC	9 cut(s)	146, 149, 152, 155, 158, 161, 197, 265, 301
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	647, 683
BmiI	GGNNCC	1 cut(s)	685
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	79, 559
BpiI	GAAGAC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	278
BsaJI	CCNNGG	5 cut(s)	84, 277, 410, 674, 723
BsaWI	WCCGGW	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	537
BseDI	CCNNGG	5 cut(s)	84, 277, 410, 674, 723
BseGI	GGATG	2 cut(s)	187, 574
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	317
BseXI	GCAGC	4 cut(s)	156, 159, 250, 286
BsgI	GTGCAG	2 cut(s)	615, 679
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	684
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	2 cut(s)	277, 589
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	2 cut(s)	217, 610
Bsp19I	CCATGG	2 cut(s)	674, 723
BspACI	CCGC	8 cut(s)	84, 86, 150, 153, 156, 159, 195, 491
BspANI	GGCC	1 cut(s)	684
BspCNI	CTCAG	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	685
BspMAI	CTGCAG	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	537
BssECI	CCNNGG	5 cut(s)	84, 277, 410, 674, 723
BssMI	GATC	2 cut(s)	217, 610
BssT1I	CCWWGG	2 cut(s)	674, 723
Bst4CI	ACNGT	3 cut(s)	389, 513, 754
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	288, 297, 428, 537
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	3 cut(s)	84, 674, 723
BstF5I	GGATG	2 cut(s)	187, 574
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	220, 613
BstMBI	GATC	2 cut(s)	217, 610
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	288
BstUI	CGCG	1 cut(s)	86
BstV1I	GCAGC	4 cut(s)	156, 159, 250, 286
BstV2I	GAAGAC	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	684
BtgI	CCRYGG	3 cut(s)	84, 674, 723
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	187, 574
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	288, 297, 428, 537
Cfr13I	GGNCC	2 cut(s)	647, 683
Cfr42I	CCGCGG	1 cut(s)	87
CviAII	CATG	3 cut(s)	427, 675, 724
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	2 cut(s)	219, 612
DpnII	GATC	2 cut(s)	217, 610
DrdI	GACNNNNNNGTC	1 cut(s)	392
DseDI	GACNNNNNNGTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	674, 723
Eco47I	GGWCC	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	683
EcoT14I	CCWWGG	2 cut(s)	674, 723
ErhI	CCWWGG	2 cut(s)	674, 723
FaeI	CATG	3 cut(s)	430, 678, 727
FaiI	YATR	7 cut(s)	114, 245, 260, 374, 428, 676, 725
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	426, 674, 723
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	9 cut(s)	145, 148, 151, 154, 157, 160, 196, 264, 300
FokI	GGATG	2 cut(s)	194, 581
Fsp4HI	GCNGC	9 cut(s)	145, 148, 151, 154, 157, 160, 196, 264, 300
GluI	GCNGC	9 cut(s)	145, 148, 151, 154, 157, 160, 196, 264, 300
HaeIII	GGCC	1 cut(s)	684
HapII	CCGG	2 cut(s)	277, 589
Hin1II	CATG	3 cut(s)	430, 678, 727
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	482
HpaII	CCGG	2 cut(s)	277, 589
HphI	GGTGA	3 cut(s)	3, 14, 651
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	9 cut(s)	96, 256, 327, 342, 385, 411, 462, 625, 708
Hpy188III	TCNNGA	2 cut(s)	108, 645
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	5 cut(s)	515, 620, 674, 697, 722
HpyCH4III	ACNGT	3 cut(s)	389, 513, 754
HpyCH4V	TGCA	6 cut(s)	230, 290, 302, 572, 596, 696
HpyF3I	CTNAG	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	430, 678, 727
Ksp22I	TGATCA	1 cut(s)	610
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	2 cut(s)	217, 610
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	8 cut(s)	216, 290, 300, 370, 405, 564, 602, 630
Lsp1109I	GCAGC	4 cut(s)	156, 159, 250, 286
LweI	GCATC	2 cut(s)	79, 559
MalI	GATC	2 cut(s)	219, 612
MboI	GATC	2 cut(s)	217, 610
MboII	GAAGA	6 cut(s)	71, 96, 249, 427, 463, 530
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	2 cut(s)	574, 640
MmeI	TCCRAC	2 cut(s)	428, 686
MnlI	CCTC	6 cut(s)	313, 321, 405, 411, 499, 701
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	64
MspA1I	CMGCKG	3 cut(s)	86, 150, 491
MspI	CCGG	2 cut(s)	277, 589
MspR9I	CCNGG	1 cut(s)	278
MvnI	CGCG	1 cut(s)	86
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	2 cut(s)	674, 723
NdeII	GATC	2 cut(s)	217, 610
NlaIII	CATG	3 cut(s)	430, 678, 727
NlaIV	GGNNCC	1 cut(s)	685
NspI	RCATGY	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	430
PkrI	GCNGC	9 cut(s)	146, 149, 152, 155, 158, 161, 197, 265, 301
PsiI	TTATAA	1 cut(s)	245
PspN4I	GGNNCC	1 cut(s)	685
PspPI	GGNCC	2 cut(s)	647, 683
PstI	CTGCAG	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	64
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	9 cut(s)	145, 148, 151, 154, 157, 160, 196, 264, 300
Sau3AI	GATC	2 cut(s)	217, 610
Sau96I	GGNCC	2 cut(s)	647, 683
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	2 cut(s)	79, 559
SfcI	CTRYAG	1 cut(s)	288
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	430
Sse9I	AATT	2 cut(s)	574, 640
SsiI	CCGC	8 cut(s)	84, 86, 150, 153, 156, 159, 195, 491
StyD4I	CCNGG	1 cut(s)	276
StyI	CCWWGG	2 cut(s)	674, 723
TaaI	ACNGT	3 cut(s)	389, 513, 754
TaqI	TCGA	1 cut(s)	109
TasI	AATT	2 cut(s)	574, 640
TauI	GCSGC	5 cut(s)	153, 156, 159, 162, 198
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	759
TseI	GCWGC	4 cut(s)	144, 147, 263, 299
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	647
XapI	RAATTY	2 cut(s)	574, 640
XceI	RCATGY	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.