Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8313957.1

Orthogroup ID

OG0005594

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 928

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8313957.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 578 bp

atatttgatgggcataatggtaactcagctgctatttatgcaaaggagactttattggataatgttttgagtgcaattcctcaaggtagcagtagggacgaatggcttcaagccctgcctcgggcactggttgctggttttgtgaaaactgatatagaatttcagcagaaaggggaaacatctggtacaactgttacattcgttgtaattgatggttggactgtgactgtggcgtctgttggggattctagatgcatattagacacccagggaggtgtggtttcactattgactgttgatcacaggctggaagaaaatgaagaggagagggagcgtgtgacagctagtgggggtgaagtaggaaggcttaatgtctttgggggcagtgaggtcggtcccctacgctgctggcctggtgggttatgcctttctaggtcaattggtgacacagacgtgggtgaatttattgtcccagtaccacatgtcaagcaagtaaagctttcaaatgccgggggaagacttataatagcttctgatggcatctgggatgctctgtcttctgatatggctgccaagtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

193

Amino Acids

20.45

Weight (kDa)

4.7

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09160 AT1G09160
fragaria_vesca	FvH4_6g07050
malus_domestica	MD04G1196500.v1.1 MD12G1209500.v1.1
prunus_persica	Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1
pyrus_communis	pycom04g17390 pycom12g19680
rosa_chinensis	RchiOBHm_Chr3g0456591
rosa_laevigata	RLG00000025289
rosa_multiflora	Rmu_co8313957.1_g000001 Rmu_sc0000133.1_g000039 Rmu_sc0017908.1_g000001 Rmu_sc0017908.1_g000007
rosa_roxburghii	Rroxscaffold_6G00422600
rosa_rugosa	Rorug03G0014200 Rorug03G0014300
rosa_samantha	Rh3AG074800 Rh3BG076700 Rh3CG076300 Rh3CG076500 Rh3DG078500
rosa_wichuraiana	Rw3G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	524
AasI	GACNNNNNNGTC	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	158, 461
AcyI	GRCGYC	1 cut(s)	233
AfaI	GTAC	2 cut(s)	187, 477
AfiI	CCNNNNNNNGG	2 cut(s)	120, 121
AflIII	ACRYGT	1 cut(s)	481
AgsI	TTSAA	2 cut(s)	110, 504
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	267, 412
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	4 cut(s)	29, 344, 499, 530
AluI	AGCT	4 cut(s)	29, 344, 499, 530
Alw26I	GTCTC	1 cut(s)	41
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	3 cut(s)	29, 405, 569
ApoI	RAATTY	2 cut(s)	158, 461
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	365, 455, 470
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	127
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BbsI	GAAGAC	2 cut(s)	523, 549
BbvI	GCAGC	3 cut(s)	16, 392, 556
BccI	CCATC	3 cut(s)	2, 206, 530
BcgI	CGANNNNNNTGC	2 cut(s)	373, 407
BciT130I	CCWGG	2 cut(s)	269, 414
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	3 cut(s)	249, 345, 432
BisI	GCNGC	3 cut(s)	30, 406, 570
BlsI	GCNGC	3 cut(s)	31, 407, 571
Bme1390I	CCNGG	3 cut(s)	269, 414, 511
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	397
BmrFI	CCNGG	3 cut(s)	269, 414, 511
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	3 cut(s)	242, 538, 549
BmuI	ACTGGG	1 cut(s)	467
BpiI	GAAGAC	2 cut(s)	523, 549
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	511
BsaHI	GRCGYC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	119, 267, 268, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 121
Bse1I	ACTGG	2 cut(s)	132, 473
BseBI	CCWGG	2 cut(s)	269, 414
BseDI	CCNNGG	4 cut(s)	119, 267, 268, 510
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	120, 121
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	132, 473
BseRI	GAGGAG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	3 cut(s)	16, 392, 556
BshFI	GGCC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	3 cut(s)	110, 381, 455
BslI	CCNNNNNNNGG	2 cut(s)	120, 121
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	3 cut(s)	110, 381, 455
BsnI	GGCC	1 cut(s)	412
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	132, 473
BssECI	CCNNGG	4 cut(s)	119, 267, 268, 510
BssMI	GATC	1 cut(s)	298
BssNI	GRCGYC	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	269, 414
Bst4CI	ACNGT	4 cut(s)	193, 223, 229, 295
Bst6I	CTCTTC	1 cut(s)	315
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 131, 496
BstNI	CCWGG	2 cut(s)	269, 414
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	267, 412, 509
BstSLI	GKGCMC	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	16, 392, 556
BstV2I	GAAGAC	2 cut(s)	523, 549
BsuRI	GGCC	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	454
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	125, 391
Cac8I	GCNNGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	186, 476
CviAII	CATG	1 cut(s)	482
CviQI	GTAC	2 cut(s)	186, 476
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
DrdI	GACNNNNNNGTC	1 cut(s)	232
DseDI	GACNNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	267, 412
EcoT22I	ATGCAT	1 cut(s)	257
FaeI	CATG	1 cut(s)	485
FaiI	YATR	8 cut(s)	15, 39, 155, 257, 424, 483, 524, 566
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	3 cut(s)	110, 381, 455
FatI	CATG	1 cut(s)	481
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	30, 406, 570
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	3 cut(s)	30, 406, 570
FspBI	CTAG	3 cut(s)	249, 345, 432
GluI	GCNGC	3 cut(s)	30, 406, 570
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	485
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	3 cut(s)	365, 455, 470
Hpy188I	TCNGA	2 cut(s)	535, 562
Hpy188III	TCNNGA	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	4 cut(s)	193, 223, 229, 295
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	41, 74, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 131, 496
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	485
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	3 cut(s)	16, 392, 556
LweI	GCATC	3 cut(s)	242, 538, 549
MaeI	CTAG	3 cut(s)	249, 345, 432
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	5 cut(s)	20, 193, 223, 337, 443
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	4 cut(s)	323, 332, 528, 549
MfeI	CAATTG	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	5 cut(s)	75, 158, 207, 438, 461
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	6 cut(s)	90, 129, 266, 316, 321, 382
Mph1103I	ATGCAT	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	3 cut(s)	269, 414, 511
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	269, 414
MwoI	GCNNNNNNNGC	3 cut(s)	38, 131, 496
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	1 cut(s)	397
NmuCI	GTSAC	3 cut(s)	223, 337, 443
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	1 cut(s)	485
OliI	CACNNNNGTG	1 cut(s)	452
PasI	CCCWGGG	1 cut(s)	268
PciI	ACATGT	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	31, 407, 571
PscI	ACATGT	1 cut(s)	481
PsiI	TTATAA	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	267, 412
PspGI	CCWGG	2 cut(s)	267, 412
PspN4I	GGNNCC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	187, 477
RsaNI	GTAC	2 cut(s)	186, 476
RseI	CAYNNNNRTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	3 cut(s)	30, 406, 570
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	1 cut(s)	395
ScrFI	CCNGG	3 cut(s)	269, 414, 511
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	31, 88, 277, 346, 393, 437, 456, 501, 532
SfaNI	GCATC	3 cut(s)	242, 538, 549
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	5 cut(s)	75, 158, 207, 438, 461
SspMI	CTAG	3 cut(s)	249, 345, 432
StyD4I	CCNGG	3 cut(s)	267, 412, 509
TaaI	ACNGT	4 cut(s)	193, 223, 229, 295
TaiI	ACGT	1 cut(s)	456
TaqII	GACCGA	1 cut(s)	383
TasI	AATT	5 cut(s)	75, 158, 207, 438, 461
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	132, 391
TseFI	GTSAC	3 cut(s)	223, 337, 443
TseI	GCWGC	3 cut(s)	29, 405, 569
Tsp45I	GTSAC	3 cut(s)	223, 337, 443
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	2 cut(s)	132, 391
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	2 cut(s)	158, 461
XbaI	TCTAGA	1 cut(s)	248
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	3 cut(s)	249, 345, 432
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.