Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0005594

Physical Location & Seq

Genomic Coordinates Forward (+)

188173 .. 189285

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgagctttcaccatccgccgtacttgcaacgaaaaccggttccatatctcgacagcaaagggttttgtcggggattgcctgcagagcttgctgcaaagttggtcgttaaggaggctctgaggtcaaggggtctgaaagatgatacaacctgcgtagttgttgacataatcccatcagaccgtcctgtcttgcctccaactccgaggaagaaacaaagcatgctcacttcacttatttttgggaagaaaagtcagaatgggagcaaaacaaataagctttcagcggtgggagttgtggaggaactgtttgaagaaggttcagcaatgcttgctgaaaggttgggtaaggatattcctttggatgcaaattctggtattttccggtgtgcagtctgccaagttgatcagccccaatcagaaggtttatcagtaaattctggaccttttttctcaccatcatcaaagccatgggaaggccccttcctctgcacaacctgtcggaaaaagaaagacgccatggaaggaaaaagaatgagcacacccacagtggctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

185

Amino Acids

20.19

Weight (kDa)

9.28

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09160 AT1G09160
fragaria_vesca	FvH4_6g07050
malus_domestica	MD04G1196500.v1.1 MD12G1209500.v1.1
prunus_persica	Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1
pyrus_communis	pycom04g17390 pycom12g19680
rosa_chinensis	RchiOBHm_Chr3g0456591
rosa_laevigata	RLG00000025289
rosa_multiflora	Rmu_co8313957.1_g000001 Rmu_sc0000133.1_g000039 Rmu_sc0017908.1_g000001 Rmu_sc0017908.1_g000007
rosa_roxburghii	Rroxscaffold_6G00422600
rosa_rugosa	Rorug03G0014200 Rorug03G0014300
rosa_samantha	Rh3AG074800 Rh3BG076700 Rh3CG076300 Rh3CG076500 Rh3DG078500
rosa_wichuraiana	Rw3G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	158
AciI	CCGC	2 cut(s)	17, 284
AcsI	RAATTY	2 cut(s)	367, 433
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	1 cut(s)	473
AgeI	ACCGGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	311
AluBI	AGCT	3 cut(s)	6, 88, 277
AluI	AGCT	3 cut(s)	6, 88, 277
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	367, 433
AsiGI	ACCGGT	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	440, 476
AsuHPI	GGTGA	1 cut(s)	444
AvaII	GGWCC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	3 cut(s)	21, 181, 463
BceAI	ACGGC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	403
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	440, 476
BmiI	GGNNCC	2 cut(s)	42, 478
BmsI	GCATC	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	3 cut(s)	203, 467, 516
BsaWI	WCCGGW	2 cut(s)	37, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	473
Bse118I	RCCGGY	1 cut(s)	37
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	203, 467, 516
BseGI	GGATG	2 cut(s)	13, 367
BseLI	CCNNNNNNNGG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	408, 472
BshFI	GGCC	1 cut(s)	477
BshTI	ACCGGT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	38, 382
BslI	CCNNNNNNNGG	1 cut(s)	473
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	1 cut(s)	403
Bsp19I	CCATGG	2 cut(s)	467, 516
BspACI	CCGC	2 cut(s)	17, 284
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	42, 478
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	3 cut(s)	203, 467, 516
BssMI	GATC	1 cut(s)	403
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	467, 516
Bst4CI	ACNGT	3 cut(s)	182, 306, 547
BstACI	GRCGYC	1 cut(s)	513
BstAPI	GCANNNNNTGC	2 cut(s)	89, 329
BstC8I	GCNNGC	4 cut(s)	81, 90, 221, 330
BstDEI	CTNAG	1 cut(s)	119
BstDSI	CCRYGG	2 cut(s)	467, 516
BstF5I	GGATG	2 cut(s)	13, 367
BstKTI	GATC	1 cut(s)	406
BstMBI	GATC	1 cut(s)	403
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 85, 89, 329
BstNSI	RCATGY	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	477
BtgI	CCRYGG	2 cut(s)	467, 516
BtsCI	GGATG	2 cut(s)	13, 367
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	4 cut(s)	81, 90, 221, 330
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	2 cut(s)	440, 476
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	1 cut(s)	22
CspAI	ACCGGT	1 cut(s)	37
CviAII	CATG	3 cut(s)	220, 468, 517
CviJI	RGCY	8 cut(s)	6, 88, 116, 277, 409, 466, 477, 551
CviKI_1	RGCY	8 cut(s)	6, 88, 116, 277, 409, 466, 477, 551
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	405
DpnII	GATC	1 cut(s)	403
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	467, 516
Eco47I	GGWCC	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	476
EcoT14I	CCWWGG	2 cut(s)	467, 516
ErhI	CCWWGG	2 cut(s)	467, 516
FaeI	CATG	3 cut(s)	223, 471, 520
FaiI	YATR	5 cut(s)	46, 167, 221, 469, 518
FatI	CATG	3 cut(s)	219, 467, 516
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	2 cut(s)	38, 382
HgaI	GACGC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	3 cut(s)	223, 471, 520
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	275
HpaII	CCGG	2 cut(s)	38, 382
HphI	GGTGA	1 cut(s)	444
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	7 cut(s)	120, 135, 178, 204, 255, 418, 501
Hpy188III	TCNNGA	2 cut(s)	50, 438
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	5 cut(s)	308, 413, 467, 490, 515
HpyCH4III	ACNGT	3 cut(s)	182, 306, 547
HpyCH4V	TGCA	6 cut(s)	28, 83, 95, 365, 389, 489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 85, 89, 329
HpyF3I	CTNAG	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	223, 471, 520
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	403
LmnI	GCTCC	1 cut(s)	261
LpnPI	CCDG	8 cut(s)	51, 93, 163, 198, 357, 395, 423, 508
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	352
MalI	GATC	1 cut(s)	405
MboI	GATC	1 cut(s)	403
MboII	GAAGA	3 cut(s)	220, 256, 323
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	2 cut(s)	367, 433
MmeI	TCCRAC	2 cut(s)	221, 479
MnlI	CCTC	6 cut(s)	106, 114, 198, 204, 292, 494
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	38, 382
MwoI	GCNNNNNNNGC	4 cut(s)	25, 85, 89, 329
NcoI	CCATGG	2 cut(s)	467, 516
NdeII	GATC	1 cut(s)	403
NlaIII	CATG	3 cut(s)	223, 471, 520
NlaIV	GGNNCC	2 cut(s)	42, 478
NspI	RCATGY	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	42, 478
PspPI	GGNCC	2 cut(s)	440, 476
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	1 cut(s)	403
Sau96I	GGNCC	2 cut(s)	440, 476
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	440
SphI	GCATGC	1 cut(s)	223
Sse9I	AATT	2 cut(s)	367, 433
SsiI	CCGC	2 cut(s)	17, 284
StyI	CCWWGG	2 cut(s)	467, 516
TaaI	ACNGT	3 cut(s)	182, 306, 547
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	367, 433
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	1 cut(s)	92
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	2 cut(s)	367, 433
XceI	RCATGY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.