Rh3CG076500

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005594
Physical Location & Seq
Reverse (-)
6022975 .. 6026447
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG076500.1

Sequence Viewer

Length: 1416 bp
ATGAGCTTTCACCATCCGCCGTACTTGCAACGAAATAAGGTTCTTGACATGTGCCGCCGGTTCCATATCTCGACAGCAAAGCTGGGTGTTCTAAGGTTTTGGCACTTGTCTCTTGAAAATGTCACAAGGACTAAAATGAGTCAGACTGAAGTAGCGAAGATGAAATCTCCTCTTGTTCCACTTGCAACATTGATTGGGCGTGAGATTAGGGGCGAGAAGGTTGAGGAACCCTATTTGAAGTATGGGCAGGCTGCTTTGGCAAAGAAAGGAGAGGATTATTTTCTGATAAAACCAGATTGCCAAAGAATTCACGCTAATCCTTCAACCTCATTTTCTGTTTTTGCGATATTTGATGGGCATAATGGTAACTCAGCTGCTATTTATGCAAAGGAGACTTTATTGGATAATGTTTTGAGTGCAATTCCTCAAGGTAGCAGTAGGGACGAATGGCTTCAAGCCCTGCCTCGGGCACTGGTTGCCGGTTTTGTGAAAACTGATATAGAATTTCAGCAGAAAGGGGAAACATCTGGTACAACTGTTACATTCGTTGTAATTGATGGTTGGACTGTGACTGTGGCATCTGTTGGGGATTCTAGATGCATATTAGACACCCAGGGAGGTGTGGTGTCACTTTTGACTGTTGATCACAGGCTGGAAGAAAATGAAGAGGAGAGGGAGCGTGTGACAGCTAGTGGGGGTGAAGTAGGAAGGCTTAATGTCTTTGGGGGCAGTGAGGTCGGTCCCCTACGCTGCTGGCCTGGTGGGTTATGCCTTTCTAGGTCAATTGGTGACACAGATGTAGGTGAATTTATTGTCCCAGTACCACATGTCAAGCAAGTAAAGCTTTCAAATGCCGGGGGAAGACTTATAATAGCTTCTGATGGCATCTGGGATGCTCTGTCTTCTGATATGGCTGCCAAGTCTTGCCGGGGATTGCCTGCAGAGCTTGCTGCAAAGTTGGTTGTTAAGGAGGCTCTGAGGTCAAGGGGTCTGAAAGATGATACAACCTGTGTAGTTGTTGACATAATCCCATCAGACCGTCCTGTCTTGCCTCCAACTCCGAGGAAGAAACCAAGCATGCTCACTTCACTTATTTTTGGGAAGAAAAGTCAGAATGGGAGCAAAACAAATAAGCTTTCAGCGGTGGGAGTTGTGGAGGAACTGTTTGAAGAAGGTTCAGCAATGCTCGCTGAAAGGTTGGGTAAGGATATTCCTTTGGATGCAAATTCTGGTATTTTCCGGTGTGCAGTCTGCCAAGTTGATCAGCCCCAATCAGAAGGTTTATCAGTAAATTCTGGACCTTTTTTCTCACCATCATCAAAGCCATGGGAAGGCCCCTTCCTCTGCACAACCTGTCGGAAAAAGAAAGACGCCATGGAAGGAAAAAGATTGAGCACACCCACAATAGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

471

Amino Acids

51.19

Weight (kDa)

8.4

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 106 - 325 3.4e-34 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 869
AasI GACNNNNNNGTC 1 cut(s) 1043
AciI CCGC 3 cut(s) 17, 55, 1142
AcsI RAATTY 5 cut(s) 306, 503, 806, 1225, 1291
AcuI CTGAAG 1 cut(s) 168
AcyI GRCGYC 1 cut(s) 1371
AfaI GTAC 3 cut(s) 23, 532, 822
AfiI CCNNNNNNNGG 3 cut(s) 465, 466, 1331
AflIII ACRYGT 2 cut(s) 48, 826
AgsI TTSAA 6 cut(s) 116, 238, 324, 455, 849, 1169
AjnI CCWGG 2 cut(s) 612, 757
AluBI AGCT 9 cut(s) 6, 82, 374, 689, 844, 875, 946, 1135, 1409
AluI AGCT 9 cut(s) 6, 82, 374, 689, 844, 875, 946, 1135, 1409
Alw21I GWGCWC 1 cut(s) 1397
Alw26I GTCTC 2 cut(s) 114, 386
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 2 cut(s) 755, 1333
ApeKI GCWGC 5 cut(s) 251, 374, 750, 914, 950
ApoI RAATTY 5 cut(s) 306, 503, 806, 1225, 1291
Asp700I GAANNNNTTC 1 cut(s) 450
AspS9I GGNCC 3 cut(s) 740, 1298, 1334
AsuC2I CCSGG 2 cut(s) 856, 929
AsuHPI GGTGA 4 cut(s) 710, 800, 815, 1302
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 2 cut(s) 740, 1298
BaeGI GKGCMC 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 522, 555
BbsI GAAGAC 2 cut(s) 868, 894
Bbv12I GWGCWC 1 cut(s) 1397
BbvI GCAGC 5 cut(s) 238, 361, 737, 901, 937
BccI CCATC 6 cut(s) 21, 347, 551, 875, 1039, 1321
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BciT130I CCWGG 2 cut(s) 614, 759
BclI TGATCA 2 cut(s) 643, 1261
BcnI CCSGG 2 cut(s) 856, 929
BcoDI GTCTC 2 cut(s) 114, 386
BfaI CTAG 3 cut(s) 594, 690, 777
BfmI CTRYAG 1 cut(s) 939
BisI GCNGC 6 cut(s) 55, 252, 375, 751, 915, 951
BlsI GCNGC 6 cut(s) 56, 253, 376, 752, 916, 952
Bme1390I CCNGG 4 cut(s) 614, 759, 856, 929
Bme18I GGWCC 2 cut(s) 740, 1298
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 3 cut(s) 740, 1298, 1334
BmiI GGNNCC 4 cut(s) 62, 228, 742, 1336
BmrFI CCNGG 4 cut(s) 614, 759, 856, 929
BmrI ACTGGG 1 cut(s) 812
BmsI GCATC 5 cut(s) 587, 587, 883, 894, 1210
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 2 cut(s) 868, 894
BpuEI CTTGAG 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 856, 929
BsaHI GRCGYC 1 cut(s) 1371
BsaJI CCNNGG 8 cut(s) 464, 612, 613, 855, 928, 1061, 1325, 1374
BsaWI WCCGGW 1 cut(s) 1239
BsaXI ACNNNNNCTCC 4 cut(s) 609, 639, 1148, 1178
Bsc4I CCNNNNNNNGG 3 cut(s) 465, 466, 1331
Bse118I RCCGGY 2 cut(s) 57, 479
Bse1I ACTGG 2 cut(s) 477, 818
Bse3DI GCAATG 1 cut(s) 1188
BseBI CCWGG 2 cut(s) 614, 759
BseDI CCNNGG 8 cut(s) 464, 612, 613, 855, 928, 1061, 1325, 1374
BseGI GGATG 3 cut(s) 13, 898, 1225
BseLI CCNNNNNNNGG 3 cut(s) 465, 466, 1331
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 2 cut(s) 384, 968
BseNI ACTGG 2 cut(s) 477, 818
BseRI GAGGAG 2 cut(s) 159, 683
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 5 cut(s) 238, 361, 737, 901, 937
BseYI CCCAGC 1 cut(s) 82
BsgI GTGCAG 2 cut(s) 1266, 1330
BshFI GGCC 2 cut(s) 757, 1335
BsiHKAI GWGCWC 1 cut(s) 1397
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 5 cut(s) 58, 480, 855, 928, 1240
BslFI GGGAC 3 cut(s) 455, 726, 800
BslI CCNNNNNNNGG 3 cut(s) 465, 466, 1331
BsmAI GTCTC 2 cut(s) 114, 386
BsmFI GGGAC 3 cut(s) 455, 726, 800
BsnI GGCC 2 cut(s) 757, 1335
BsoBI CYCGRG 1 cut(s) 465
Bsp1286I GDGCHC 2 cut(s) 472, 1397
Bsp143I GATC 2 cut(s) 643, 1261
Bsp19I CCATGG 2 cut(s) 1325, 1374
BspACI CCGC 3 cut(s) 17, 55, 1142
BspANI GGCC 2 cut(s) 757, 1335
BspCNI CTCAG 2 cut(s) 383, 969
BspLI GGNNCC 4 cut(s) 62, 228, 742, 1336
BspMAI CTGCAG 1 cut(s) 943
BsrDI GCAATG 1 cut(s) 1188
BsrFI RCCGGY 2 cut(s) 57, 479
BsrI ACTGG 2 cut(s) 477, 818
BssAI RCCGGY 2 cut(s) 57, 479
BssECI CCNNGG 8 cut(s) 464, 612, 613, 855, 928, 1061, 1325, 1374
BssMI GATC 2 cut(s) 643, 1261
BssNI GRCGYC 1 cut(s) 1371
BssT1I CCWWGG 2 cut(s) 1325, 1374
Bst2UI CCWGG 2 cut(s) 614, 759
Bst4CI ACNGT 6 cut(s) 538, 568, 574, 640, 1040, 1164
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 1371
BstAPI GCANNNNNTGC 2 cut(s) 476, 947
BstC8I GCNNGC 6 cut(s) 249, 755, 939, 948, 1079, 1188
BstDEI CTNAG 3 cut(s) 92, 370, 977
BstDSI CCRYGG 2 cut(s) 1325, 1374
BstF5I GGATG 3 cut(s) 13, 898, 1225
BstKTI GATC 2 cut(s) 646, 1264
BstMAI GTCTC 2 cut(s) 114, 386
BstMBI GATC 2 cut(s) 643, 1261
BstMWI GCNNNNNNNGC 8 cut(s) 25, 257, 383, 476, 841, 943, 947, 1187
BstNI CCWGG 2 cut(s) 614, 759
BstNSI RCATGY 3 cut(s) 52, 830, 1081
BstSCI CCNGG 4 cut(s) 612, 757, 854, 927
BstSFI CTRYAG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 5 cut(s) 238, 361, 737, 901, 937
BstV2I GAAGAC 2 cut(s) 868, 894
BsuRI GGCC 2 cut(s) 757, 1335
BtgI CCRYGG 2 cut(s) 1325, 1374
BtsCI GGATG 3 cut(s) 13, 898, 1225
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 470, 736
Cac8I GCNNGC 6 cut(s) 249, 755, 939, 948, 1079, 1188
Cfr10I RCCGGY 2 cut(s) 57, 479
Cfr13I GGNCC 3 cut(s) 740, 1298, 1334
CseI GACGC 1 cut(s) 1379
Csp6I GTAC 3 cut(s) 22, 531, 821
CviAII CATG 5 cut(s) 49, 827, 1078, 1326, 1375
CviQI GTAC 3 cut(s) 22, 531, 821
DdeI CTNAG 3 cut(s) 92, 370, 977
DpnI GATC 2 cut(s) 645, 1263
DpnII GATC 2 cut(s) 643, 1261
DrdI GACNNNNNNGTC 1 cut(s) 1043
DseDI GACNNNNNNGTC 1 cut(s) 1043
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 1325, 1374
Eco47I GGWCC 2 cut(s) 740, 1298
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 1334
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 2 cut(s) 612, 757
EcoT14I CCWWGG 2 cut(s) 1325, 1374
EcoT22I ATGCAT 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 1325, 1374
FaeI CATG 5 cut(s) 52, 830, 1081, 1329, 1378
FalI AAGNNNNNCTT 2 cut(s) 828, 860
FaqI GGGAC 3 cut(s) 455, 726, 800
FatI CATG 5 cut(s) 48, 826, 1077, 1325, 1374
FbaI TGATCA 2 cut(s) 643, 1261
Fnu4HI GCNGC 6 cut(s) 55, 252, 375, 751, 915, 951
FokI GGATG 2 cut(s) 905, 1232
Fsp4HI GCNGC 6 cut(s) 55, 252, 375, 751, 915, 951
FspBI CTAG 3 cut(s) 594, 690, 777
GluI GCNGC 6 cut(s) 55, 252, 375, 751, 915, 951
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 757, 1335
HapII CCGG 5 cut(s) 58, 480, 855, 928, 1240
HgaI GACGC 1 cut(s) 1379
Hin1I GRCGYC 1 cut(s) 1371
Hin1II CATG 5 cut(s) 52, 830, 1081, 1329, 1378
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HindIII AAGCTT 2 cut(s) 842, 1133
HinfI GANTC 2 cut(s) 139, 590
HpaII CCGG 5 cut(s) 58, 480, 855, 928, 1240
HphI GGTGA 4 cut(s) 710, 800, 815, 1302
Hpy166II GTNNAC 1 cut(s) 1021
Hpy188III TCNNGA 5 cut(s) 44, 70, 113, 594, 1296
Hpy8I GTNNAC 1 cut(s) 1021
HpyAV CCTTC 8 cut(s) 211, 330, 702, 1166, 1271, 1325, 1348, 1373
HpyCH4III ACNGT 6 cut(s) 538, 568, 574, 640, 1040, 1164
HpyF10VI GCNNNNNNNGC 8 cut(s) 25, 257, 383, 476, 841, 943, 947, 1187
HpyF3I CTNAG 3 cut(s) 92, 370, 977
Hsp92I GRCGYC 1 cut(s) 1371
Hsp92II CATG 5 cut(s) 52, 830, 1081, 1329, 1378
Ksp22I TGATCA 2 cut(s) 643, 1261
Kzo9I GATC 2 cut(s) 643, 1261
LmnI GCTCC 2 cut(s) 676, 1119
Lsp1109I GCAGC 5 cut(s) 238, 361, 737, 901, 937
LweI GCATC 5 cut(s) 587, 587, 883, 894, 1210
MaeI CTAG 3 cut(s) 594, 690, 777
MaeIII GTNAC 7 cut(s) 121, 365, 538, 568, 627, 682, 788
MalI GATC 2 cut(s) 645, 1263
MboI GATC 2 cut(s) 643, 1261
MboII GAAGA 8 cut(s) 169, 668, 677, 873, 894, 1078, 1114, 1181
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 2 cut(s) 472, 1397
MluCI AATT 8 cut(s) 306, 420, 503, 552, 783, 806, 1225, 1291
MlyI GAGTC 1 cut(s) 148
MmeI TCCRAC 3 cut(s) 542, 1079, 1337
Mph1103I ATGCAT 1 cut(s) 602
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 2 cut(s) 714, 966
MspA1I CMGCKG 2 cut(s) 374, 1142
MspI CCGG 5 cut(s) 58, 480, 855, 928, 1240
MspR9I CCNGG 4 cut(s) 614, 759, 856, 929
MunI CAATTG 1 cut(s) 783
MvaI CCWGG 2 cut(s) 614, 759
MwoI GCNNNNNNNGC 8 cut(s) 25, 257, 383, 476, 841, 943, 947, 1187
NciI CCSGG 2 cut(s) 856, 929
NcoI CCATGG 2 cut(s) 1325, 1374
NdeII GATC 2 cut(s) 643, 1261
NlaIII CATG 5 cut(s) 52, 830, 1081, 1329, 1378
NlaIV GGNNCC 4 cut(s) 62, 228, 742, 1336
NmuCI GTSAC 5 cut(s) 121, 568, 627, 682, 788
NsiI ATGCAT 1 cut(s) 602
NspI RCATGY 3 cut(s) 52, 830, 1081
PaeI GCATGC 1 cut(s) 1081
PasI CCCWGGG 1 cut(s) 613
PciI ACATGT 2 cut(s) 48, 826
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 590
PkrI GCNGC 6 cut(s) 56, 253, 376, 752, 916, 952
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PscI ACATGT 2 cut(s) 48, 826
PsiI TTATAA 1 cut(s) 869
Psp6I CCWGG 2 cut(s) 612, 757
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 612, 757
PspN4I GGNNCC 4 cut(s) 62, 228, 742, 1336
PspPI GGNCC 3 cut(s) 740, 1298, 1334
PstI CTGCAG 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 374
RsaI GTAC 3 cut(s) 23, 532, 822
RsaNI GTAC 3 cut(s) 22, 531, 821
SaqAI TTAA 2 cut(s) 714, 966
SatI GCNGC 6 cut(s) 55, 252, 375, 751, 915, 951
Sau3AI GATC 2 cut(s) 643, 1261
Sau96I GGNCC 3 cut(s) 740, 1298, 1334
SchI GAGTC 1 cut(s) 148
ScrFI CCNGG 4 cut(s) 614, 759, 856, 929
SduI GDGCHC 2 cut(s) 472, 1397
SfaNI GCATC 5 cut(s) 587, 587, 883, 894, 1210
SfcI CTRYAG 1 cut(s) 939
SinI GGWCC 2 cut(s) 740, 1298
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
SphI GCATGC 1 cut(s) 1081
Sse9I AATT 8 cut(s) 306, 420, 503, 552, 783, 806, 1225, 1291
SsiI CCGC 3 cut(s) 17, 55, 1142
SspMI CTAG 3 cut(s) 594, 690, 777
StyD4I CCNGG 4 cut(s) 612, 757, 854, 927
StyI CCWWGG 2 cut(s) 1325, 1374
TaaI ACNGT 6 cut(s) 538, 568, 574, 640, 1040, 1164
TaqI TCGA 1 cut(s) 71
TaqII GACCGA 1 cut(s) 728
TasI AATT 8 cut(s) 306, 420, 503, 552, 783, 806, 1225, 1291
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 590
Tru1I TTAA 2 cut(s) 714, 966
Tru9I TTAA 2 cut(s) 714, 966
TscAI CASTG 2 cut(s) 477, 736
TseFI GTSAC 5 cut(s) 121, 568, 627, 682, 788
TseI GCWGC 5 cut(s) 251, 374, 750, 914, 950
Tsp45I GTSAC 5 cut(s) 121, 568, 627, 682, 788
TspDTI ATGAA 2 cut(s) 176, 678
TspRI CASTG 2 cut(s) 477, 736
VpaK11BI GGWCC 2 cut(s) 740, 1298
XapI RAATTY 5 cut(s) 306, 503, 806, 1225, 1291
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 3 cut(s) 52, 830, 1081
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 3 cut(s) 594, 690, 777
Zsp2I ATGCAT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.