Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017908.1

Orthogroup ID

OG0005594

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4250

Gene Structure 4250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017908.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1397 bp

gatttgtagatggacttcagtgtgttaaaggttcgatctgtctctgcctatctgcgtttcagctgggtgttctaaggttttggcacttgtctcttgaaaatgtcacaaggactaaaatgagtcagactgaagtagcgaggatgaagtctcctcttgttccacttgcaactttgattgggcgtgagattaggggcgagaaggttcaggaaccctatttaaagtatgggcaggctgctttggcaaagaaaggagaggattattttctgataaaaccagattgccaaagaattcatgctaatccttcaacctcattttctgtttttgcgatatttgatgggcataatggtaactcagctgctatttatgcaaaggagactttattggataatgttttgagtgcaattcctcaaggtagcagtagggacgaatggcttcaagccctgcctcgggcactggttgctggttttgtgaaaactgatatagaatttcagcagaaaggggaaacatctggtacaactgttacattcgttgtaattgatggttggactgtgactgtggcgtctgttggggattctagatgcatattagacacccagggaggtgtggtttcactattgactgttgatcacaggctggaagaaaatgaagaggagagggagcgtgtgacagctagtgggggtgaagtaggaaggcttaatgtctttgggggcagtgaggtcggtcccctacgctgctggcctggtgggttatgcctttctaggtcaattggtgacacagacgtgggtgaatttattgtcccagtaccacatgtcaagcaagtaaagctttcaaatgccgggggaagacttataatagcttctgatggcatctgggatgctctgtcttctgatatggctgccaagtcttgtcggggattgcctgcagagcttgctgcaaagtgggtcgttaaggaggctctgaggtcaaggggtctgaaagatgatacaacctgcgtagttgttgacataatcccatcagaccgtcctgtcttgcctccaactccgaggaagaaacaaagcatgctcacttcacttatttttgggaagaaaagtcagaatgggagcaaaacaaataagctttcagcggtgggagttgtggaggaactgtttgaagaaggttcagcaatgctcgctgaaaggttgggtaaggatattcctttggatgcaaattctggtattttccggtgtgcagtctgccaagttgatcagccccaatcagaaggtttatcagtaaattctggaccttttttctcaccatcatcaaagccatgggaaggccccttcctctgcacaacctgtcggaaaaagaaagacgccatggaaggaaaaagaatgagcacacccacagtggctttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

464

Amino Acids

50.15

Weight (kDa)

7.58

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09160 AT1G09160
fragaria_vesca	FvH4_6g07050
malus_domestica	MD04G1196500.v1.1 MD12G1209500.v1.1
prunus_persica	Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1
pyrus_communis	pycom04g17390 pycom12g19680
rosa_chinensis	RchiOBHm_Chr3g0456591
rosa_laevigata	RLG00000025289
rosa_multiflora	Rmu_co8313957.1_g000001 Rmu_sc0000133.1_g000039 Rmu_sc0017908.1_g000001 Rmu_sc0017908.1_g000007
rosa_roxburghii	Rroxscaffold_6G00422600
rosa_rugosa	Rorug03G0014200 Rorug03G0014300
rosa_samantha	Rh3AG074800 Rh3BG076700 Rh3CG076300 Rh3CG076500 Rh3DG078500
rosa_wichuraiana	Rw3G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	850
AasI	GACNNNNNNGTC	2 cut(s)	558, 1024
Acc36I	ACCTGC	1 cut(s)	997
AciI	CCGC	1 cut(s)	1123
AcsI	RAATTY	5 cut(s)	287, 484, 787, 1206, 1272
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	2 cut(s)	559, 1352
AfaI	GTAC	2 cut(s)	513, 803
AfiI	CCNNNNNNNGG	3 cut(s)	446, 447, 1312
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	5 cut(s)	97, 305, 436, 830, 1150
AjiI	CACGTC	1 cut(s)	780
AjnI	CCWGG	2 cut(s)	593, 738
AleI	CACNNNNGTG	1 cut(s)	778
AluBI	AGCT	7 cut(s)	63, 355, 670, 825, 856, 927, 1116
AluI	AGCT	7 cut(s)	63, 355, 670, 825, 856, 927, 1116
Alw21I	GWGCWC	1 cut(s)	1378
Alw26I	GTCTC	4 cut(s)	46, 95, 152, 367
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	736, 1314
ApeKI	GCWGC	5 cut(s)	232, 355, 731, 895, 931
ApoI	RAATTY	5 cut(s)	287, 484, 787, 1206, 1272
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	3 cut(s)	721, 1279, 1315
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	4 cut(s)	691, 781, 796, 1283
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	2 cut(s)	721, 1279
BaeGI	GKGCMC	1 cut(s)	453
BaeI	ACNNNNGTAYC	2 cut(s)	503, 536
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	849, 875
Bbv12I	GWGCWC	1 cut(s)	1378
BbvI	GCAGC	5 cut(s)	219, 342, 718, 882, 918
BccI	CCATC	6 cut(s)	4, 328, 532, 856, 1020, 1302
BcgI	CGANNNNNNTGC	2 cut(s)	699, 733
BciT130I	CCWGG	2 cut(s)	595, 740
BclI	TGATCA	2 cut(s)	624, 1242
BcnI	CCSGG	1 cut(s)	837
BcoDI	GTCTC	4 cut(s)	46, 95, 152, 367
BfaI	CTAG	3 cut(s)	575, 671, 758
BfmI	CTRYAG	1 cut(s)	920
BfuAI	ACCTGC	1 cut(s)	997
BisI	GCNGC	5 cut(s)	233, 356, 732, 896, 932
BlsI	GCNGC	5 cut(s)	234, 357, 733, 897, 933
Bme1390I	CCNGG	3 cut(s)	595, 740, 837
Bme18I	GGWCC	2 cut(s)	721, 1279
BmeT110I	CYCGRG	1 cut(s)	446
BmgBI	CACGTC	1 cut(s)	780
BmgT120I	GGNCC	3 cut(s)	721, 1279, 1315
BmiI	GGNNCC	3 cut(s)	209, 723, 1317
BmrFI	CCNGG	3 cut(s)	595, 740, 837
BmrI	ACTGGG	1 cut(s)	793
BmsI	GCATC	4 cut(s)	568, 864, 875, 1191
BmuI	ACTGGG	1 cut(s)	793
BpiI	GAAGAC	2 cut(s)	849, 875
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	837
BsaHI	GRCGYC	2 cut(s)	559, 1352
BsaJI	CCNNGG	7 cut(s)	445, 593, 594, 836, 1042, 1306, 1355
BsaWI	WCCGGW	1 cut(s)	1220
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 1129, 1159
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 447, 1312
Bse1I	ACTGG	2 cut(s)	458, 799
Bse3DI	GCAATG	1 cut(s)	1169
BseBI	CCWGG	2 cut(s)	595, 740
BseDI	CCNNGG	7 cut(s)	445, 593, 594, 836, 1042, 1306, 1355
BseGI	GGATG	3 cut(s)	146, 879, 1206
BseLI	CCNNNNNNNGG	3 cut(s)	446, 447, 1312
BseMI	GCAATG	1 cut(s)	1169
BseMII	CTCAG	2 cut(s)	365, 949
BseNI	ACTGG	2 cut(s)	458, 799
BseRI	GAGGAG	2 cut(s)	140, 664
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	5 cut(s)	219, 342, 718, 882, 918
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	2 cut(s)	1247, 1311
BshFI	GGCC	2 cut(s)	738, 1316
BsiHKAI	GWGCWC	1 cut(s)	1378
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	836, 1221
BslFI	GGGAC	3 cut(s)	436, 707, 781
BslI	CCNNNNNNNGG	3 cut(s)	446, 447, 1312
BsmAI	GTCTC	4 cut(s)	46, 95, 152, 367
BsmFI	GGGAC	3 cut(s)	436, 707, 781
BsnI	GGCC	2 cut(s)	738, 1316
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	2 cut(s)	453, 1378
Bsp143I	GATC	3 cut(s)	35, 624, 1242
Bsp19I	CCATGG	2 cut(s)	1306, 1355
BspACI	CCGC	1 cut(s)	1123
BspANI	GGCC	2 cut(s)	738, 1316
BspCNI	CTCAG	2 cut(s)	364, 950
BspLI	GGNNCC	3 cut(s)	209, 723, 1317
BspMAI	CTGCAG	1 cut(s)	924
BspMI	ACCTGC	1 cut(s)	997
BsrDI	GCAATG	1 cut(s)	1169
BsrI	ACTGG	2 cut(s)	458, 799
BssECI	CCNNGG	7 cut(s)	445, 593, 594, 836, 1042, 1306, 1355
BssMI	GATC	3 cut(s)	35, 624, 1242
BssNI	GRCGYC	2 cut(s)	559, 1352
BssT1I	CCWWGG	2 cut(s)	1306, 1355
Bst2UI	CCWGG	2 cut(s)	595, 740
Bst4CI	ACNGT	7 cut(s)	519, 549, 555, 621, 1021, 1145, 1386
Bst6I	CTCTTC	1 cut(s)	641
BstACI	GRCGYC	2 cut(s)	559, 1352
BstAPI	GCANNNNNTGC	2 cut(s)	457, 928
BstC8I	GCNNGC	6 cut(s)	230, 736, 920, 929, 1060, 1169
BstDEI	CTNAG	3 cut(s)	73, 351, 958
BstDSI	CCRYGG	2 cut(s)	1306, 1355
BstF5I	GGATG	3 cut(s)	146, 879, 1206
BstKTI	GATC	3 cut(s)	38, 627, 1245
BstMAI	GTCTC	4 cut(s)	46, 95, 152, 367
BstMBI	GATC	3 cut(s)	35, 624, 1242
BstMWI	GCNNNNNNNGC	7 cut(s)	238, 364, 457, 822, 924, 928, 1168
BstNI	CCWGG	2 cut(s)	595, 740
BstNSI	RCATGY	2 cut(s)	811, 1062
BstSCI	CCNGG	3 cut(s)	593, 738, 835
BstSFI	CTRYAG	1 cut(s)	920
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	5 cut(s)	219, 342, 718, 882, 918
BstV2I	GAAGAC	2 cut(s)	849, 875
BsuRI	GGCC	2 cut(s)	738, 1316
BtgI	CCRYGG	2 cut(s)	1306, 1355
BtrI	CACGTC	1 cut(s)	780
BtsCI	GGATG	3 cut(s)	146, 879, 1206
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	4 cut(s)	25, 451, 717, 1391
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	6 cut(s)	230, 736, 920, 929, 1060, 1169
Cfr13I	GGNCC	3 cut(s)	721, 1279, 1315
CseI	GACGC	2 cut(s)	548, 1360
Csp6I	GTAC	2 cut(s)	512, 802
CviAII	CATG	5 cut(s)	292, 808, 1059, 1307, 1356
CviQI	GTAC	2 cut(s)	512, 802
DdeI	CTNAG	3 cut(s)	73, 351, 958
DpnI	GATC	3 cut(s)	37, 626, 1244
DpnII	GATC	3 cut(s)	35, 624, 1242
DraI	TTTAAA	1 cut(s)	218
DrdI	GACNNNNNNGTC	2 cut(s)	558, 1024
DseDI	GACNNNNNNGTC	2 cut(s)	558, 1024
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	2 cut(s)	1306, 1355
Eco47I	GGWCC	2 cut(s)	721, 1279
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	1315
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	593, 738
EcoT14I	CCWWGG	2 cut(s)	1306, 1355
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	2 cut(s)	1306, 1355
FaeI	CATG	5 cut(s)	295, 811, 1062, 1310, 1359
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	3 cut(s)	436, 707, 781
FatI	CATG	5 cut(s)	291, 807, 1058, 1306, 1355
FbaI	TGATCA	2 cut(s)	624, 1242
Fnu4HI	GCNGC	5 cut(s)	233, 356, 732, 896, 932
FokI	GGATG	3 cut(s)	153, 886, 1213
Fsp4HI	GCNGC	5 cut(s)	233, 356, 732, 896, 932
FspBI	CTAG	3 cut(s)	575, 671, 758
GluI	GCNGC	5 cut(s)	233, 356, 732, 896, 932
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	738, 1316
HapII	CCGG	2 cut(s)	836, 1221
HgaI	GACGC	2 cut(s)	548, 1360
Hin1I	GRCGYC	2 cut(s)	559, 1352
Hin1II	CATG	5 cut(s)	295, 811, 1062, 1310, 1359
HincII	GTYRAC	1 cut(s)	1002
HindII	GTYRAC	1 cut(s)	1002
HindIII	AAGCTT	2 cut(s)	823, 1114
HinfI	GANTC	2 cut(s)	120, 571
HpaII	CCGG	2 cut(s)	836, 1221
HphI	GGTGA	4 cut(s)	691, 781, 796, 1283
Hpy166II	GTNNAC	1 cut(s)	1002
Hpy188III	TCNNGA	4 cut(s)	94, 205, 575, 1277
Hpy8I	GTNNAC	1 cut(s)	1002
HpyAV	CCTTC	8 cut(s)	192, 311, 683, 1147, 1252, 1306, 1329, 1354
HpyCH4III	ACNGT	7 cut(s)	519, 549, 555, 621, 1021, 1145, 1386
HpyCH4IV	ACGT	1 cut(s)	779
HpyCH4V	TGCA	9 cut(s)	166, 367, 400, 581, 922, 934, 1204, 1228, 1328
HpyF10VI	GCNNNNNNNGC	7 cut(s)	238, 364, 457, 822, 924, 928, 1168
HpyF3I	CTNAG	3 cut(s)	73, 351, 958
HpySE526I	ACGT	1 cut(s)	779
Hsp92I	GRCGYC	2 cut(s)	559, 1352
Hsp92II	CATG	5 cut(s)	295, 811, 1062, 1310, 1359
Ksp22I	TGATCA	2 cut(s)	624, 1242
Kzo9I	GATC	3 cut(s)	35, 624, 1242
LmnI	GCTCC	2 cut(s)	657, 1100
Lsp1109I	GCAGC	5 cut(s)	219, 342, 718, 882, 918
LweI	GCATC	4 cut(s)	568, 864, 875, 1191
MaeI	CTAG	3 cut(s)	575, 671, 758
MaeII	ACGT	1 cut(s)	779
MaeIII	GTNAC	6 cut(s)	102, 346, 519, 549, 663, 769
MalI	GATC	3 cut(s)	37, 626, 1244
MboI	GATC	3 cut(s)	35, 624, 1242
MboII	GAAGA	7 cut(s)	649, 658, 854, 875, 1059, 1095, 1162
MfeI	CAATTG	1 cut(s)	764
MhlI	GDGCHC	2 cut(s)	453, 1378
MluCI	AATT	8 cut(s)	287, 401, 484, 533, 764, 787, 1206, 1272
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	3 cut(s)	523, 1060, 1318
Mph1103I	ATGCAT	1 cut(s)	583
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	4 cut(s)	26, 217, 695, 947
MslI	CAYNNNNRTG	1 cut(s)	778
MspA1I	CMGCKG	3 cut(s)	63, 355, 1123
MspI	CCGG	2 cut(s)	836, 1221
MspR9I	CCNGG	3 cut(s)	595, 740, 837
MunI	CAATTG	1 cut(s)	764
MvaI	CCWGG	2 cut(s)	595, 740
MwoI	GCNNNNNNNGC	7 cut(s)	238, 364, 457, 822, 924, 928, 1168
NciI	CCSGG	1 cut(s)	837
NcoI	CCATGG	2 cut(s)	1306, 1355
NdeII	GATC	3 cut(s)	35, 624, 1242
NlaIII	CATG	5 cut(s)	295, 811, 1062, 1310, 1359
NlaIV	GGNNCC	3 cut(s)	209, 723, 1317
NmuCI	GTSAC	4 cut(s)	102, 549, 663, 769
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	811, 1062
OliI	CACNNNNGTG	1 cut(s)	778
PaeI	GCATGC	1 cut(s)	1062
PasI	CCCWGGG	1 cut(s)	594
PciI	ACATGT	1 cut(s)	807
PdmI	GAANNNNTTC	1 cut(s)	431
PfeI	GAWTC	1 cut(s)	571
PkrI	GCNGC	5 cut(s)	234, 357, 733, 897, 933
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	807
PsiI	TTATAA	1 cut(s)	850
Psp6I	CCWGG	2 cut(s)	593, 738
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	593, 738
PspN4I	GGNNCC	3 cut(s)	209, 723, 1317
PspPI	GGNCC	3 cut(s)	721, 1279, 1315
PstI	CTGCAG	1 cut(s)	924
PvuII	CAGCTG	2 cut(s)	63, 355
RsaI	GTAC	2 cut(s)	513, 803
RsaNI	GTAC	2 cut(s)	512, 802
RseI	CAYNNNNRTG	1 cut(s)	778
SaqAI	TTAA	4 cut(s)	26, 217, 695, 947
SatI	GCNGC	5 cut(s)	233, 356, 732, 896, 932
Sau3AI	GATC	3 cut(s)	35, 624, 1242
Sau96I	GGNCC	3 cut(s)	721, 1279, 1315
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	3 cut(s)	595, 740, 837
SduI	GDGCHC	2 cut(s)	453, 1378
SfaNI	GCATC	4 cut(s)	568, 864, 875, 1191
SfcI	CTRYAG	1 cut(s)	920
SinI	GGWCC	2 cut(s)	721, 1279
SmiMI	CAYNNNNRTG	1 cut(s)	778
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	1062
Sse9I	AATT	8 cut(s)	287, 401, 484, 533, 764, 787, 1206, 1272
SsiI	CCGC	1 cut(s)	1123
SspMI	CTAG	3 cut(s)	575, 671, 758
StyD4I	CCNGG	3 cut(s)	593, 738, 835
StyI	CCWWGG	2 cut(s)	1306, 1355
TaaI	ACNGT	7 cut(s)	519, 549, 555, 621, 1021, 1145, 1386
TaiI	ACGT	1 cut(s)	782
TaqI	TCGA	1 cut(s)	34
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	8 cut(s)	287, 401, 484, 533, 764, 787, 1206, 1272
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	4 cut(s)	26, 217, 695, 947
Tru9I	TTAA	4 cut(s)	26, 217, 695, 947
TscAI	CASTG	4 cut(s)	25, 458, 717, 1391
TseFI	GTSAC	4 cut(s)	102, 549, 663, 769
TseI	GCWGC	5 cut(s)	232, 355, 731, 895, 931
Tsp45I	GTSAC	4 cut(s)	102, 549, 663, 769
TspDTI	ATGAA	3 cut(s)	157, 280, 659
TspRI	CASTG	4 cut(s)	25, 458, 717, 1391
VpaK11BI	GGWCC	2 cut(s)	721, 1279
XapI	RAATTY	5 cut(s)	287, 484, 787, 1206, 1272
XbaI	TCTAGA	1 cut(s)	574
XceI	RCATGY	2 cut(s)	811, 1062
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	3 cut(s)	575, 671, 758
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.