Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005594

Physical Location & Seq

Genomic Coordinates Reverse (-)

6009659 .. 6010527

Gene Structure 869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG074800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTGCCAAGTCTTGCCGGGGATTGCCTGCAGAGCTTGCTGCAAAGTTGGTCGTTAAGGAGGCTCTGAGGTCAAGGGGTCTGAAAGATGATACAACCTGCGTAGTTGTTGACATAATCCCATCAGACCGTCCTGTCTTGCCTCCAACTCCGAGGAAGAAACAAAGCATGCTTACTTCACTTATTTTTGGGAAGAAAAGTCAGAATGGGAGCAAAACAAATAAGCTTTCAGCGGTGGGAGTTGTGGAGGAACTGTTTGAAGAAGGTTCAGCAATGCTCGCTGAAAGGTTGGGTAAGGATATTCCTTTGGATGCAAATTCTGGTATTTTCCGGTGTGCAGTCTGCCAAGTTGATCAGCCCCAATCAGAAGGTTTATCGGTAAATTCTGGACCTTTGTTCTCACCATCATCAAAGCCATGGGAAGGCCCCTTCCTCTGCACAACCTGTCGGAAAAAGAAAGACGCCATGGAAGGAAAAAGAATGAGCACACCCACAGTGGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

168

Amino Acids

18.02

Weight (kDa)

9.22

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09160 AT1G09160
fragaria_vesca	FvH4_6g07050
malus_domestica	MD04G1196500.v1.1 MD12G1209500.v1.1
prunus_persica	Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1 Prupe.6G316800_v2.0.a1
pyrus_communis	pycom04g17390 pycom12g19680
rosa_chinensis	RchiOBHm_Chr3g0456591
rosa_laevigata	RLG00000025289
rosa_multiflora	Rmu_co8313957.1_g000001 Rmu_sc0000133.1_g000039 Rmu_sc0017908.1_g000001 Rmu_sc0017908.1_g000007
rosa_roxburghii	Rroxscaffold_6G00422600
rosa_rugosa	Rorug03G0014200 Rorug03G0014300
rosa_samantha	Rh3AG074800 Rh3BG076700 Rh3CG076300 Rh3CG076500 Rh3DG078500
rosa_wichuraiana	Rw3G006420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	107
AciI	CCGC	1 cut(s)	233
AcsI	RAATTY	2 cut(s)	316, 382
AcyI	GRCGYC	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	2 cut(s)	37, 226
AluI	AGCT	2 cut(s)	37, 226
Alw21I	GWGCWC	1 cut(s)	488
AoxI	GGCC	1 cut(s)	424
ApeKI	GCWGC	2 cut(s)	5, 41
ApoI	RAATTY	2 cut(s)	316, 382
AspS9I	GGNCC	2 cut(s)	389, 425
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	130, 412
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	30
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	2 cut(s)	6, 42
BlsI	GCNGC	2 cut(s)	7, 43
Bme1390I	CCNGG	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	389, 425
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	20
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	19, 152, 416, 465
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	279
BseDI	CCNNGG	4 cut(s)	19, 152, 416, 465
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	2 cut(s)	357, 421
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	19, 331
BslI	CCNNNNNNNGG	1 cut(s)	422
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	352
Bsp19I	CCATGG	2 cut(s)	416, 465
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	34
BspMI	ACCTGC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	4 cut(s)	19, 152, 416, 465
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	2 cut(s)	416, 465
Bst4CI	ACNGT	3 cut(s)	131, 255, 496
BstACI	GRCGYC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	4 cut(s)	30, 39, 170, 279
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	2 cut(s)	416, 465
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 38, 278
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	416, 465
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	30, 39, 170, 279
Cfr13I	GGNCC	2 cut(s)	389, 425
CseI	GACGC	1 cut(s)	470
CviAII	CATG	3 cut(s)	169, 417, 466
CviJI	RGCY	8 cut(s)	5, 37, 65, 226, 358, 415, 426, 500
CviKI_1	RGCY	8 cut(s)	5, 37, 65, 226, 358, 415, 426, 500
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
Eco130I	CCWWGG	2 cut(s)	416, 465
Eco47I	GGWCC	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	425
EcoT14I	CCWWGG	2 cut(s)	416, 465
ErhI	CCWWGG	2 cut(s)	416, 465
FaeI	CATG	3 cut(s)	172, 420, 469
FaiI	YATR	4 cut(s)	116, 170, 418, 467
FatI	CATG	3 cut(s)	168, 416, 465
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	2 cut(s)	6, 42
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	2 cut(s)	6, 42
GluI	GCNGC	2 cut(s)	6, 42
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	2 cut(s)	19, 331
HgaI	GACGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	172, 420, 469
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	224
HpaII	CCGG	2 cut(s)	19, 331
HphI	GGTGA	1 cut(s)	393
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	7 cut(s)	69, 84, 127, 153, 204, 367, 450
Hpy188III	TCNNGA	1 cut(s)	387
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	5 cut(s)	257, 362, 416, 439, 464
HpyCH4III	ACNGT	3 cut(s)	131, 255, 496
HpyCH4V	TGCA	5 cut(s)	32, 44, 314, 338, 438
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 38, 278
HpyF3I	CTNAG	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	172, 420, 469
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	210
LpnPI	CCDG	8 cut(s)	32, 42, 112, 147, 306, 344, 372, 457
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	301
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	3 cut(s)	169, 205, 272
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	316, 382
MmeI	TCCRAC	2 cut(s)	170, 428
MnlI	CCTC	6 cut(s)	55, 63, 147, 153, 241, 443
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	19, 331
MspR9I	CCNGG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	34, 38, 278
NciI	CCSGG	1 cut(s)	20
NcoI	CCATGG	2 cut(s)	416, 465
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	3 cut(s)	172, 420, 469
NlaIV	GGNNCC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PkrI	GCNGC	2 cut(s)	7, 43
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	389, 425
PstI	CTGCAG	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	6, 42
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	389, 425
ScrFI	CCNGG	1 cut(s)	20
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	9 cut(s)	39, 74, 101, 228, 268, 290, 373, 394, 446
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	389
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	2 cut(s)	316, 382
SsiI	CCGC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	18
StyI	CCWWGG	2 cut(s)	416, 465
TaaI	ACNGT	3 cut(s)	131, 255, 496
TasI	AATT	2 cut(s)	316, 382
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	5, 41
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	2 cut(s)	316, 382
XceI	RCATGY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.