AT1G09195

Ppx/GppA phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003859
Physical Location & Seq
Reverse (-)
2967940 .. 2971568
3629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09195.9

Sequence Viewer

Length: 963 bp
ATGCGGTTTTTGAGGATGTTGGGCTTAAGGTCGATGTGCTTTCTGGTGAAGAGGAAGCCAGGGTATAAGAGGGACTGGAGATTTGGTACAAGAGAGCTGAGCAGCGTTGTAGCAAAGCTATGCAGTGAAGGAGACGAAGAGCTGATTCGAAGGGAGGGATTTTTCAAGAGAAGATCAGAGTTCATTGTTGCTGGGGCTGTATTGTTGGAGGAAATATTCAAGGCTCTTGGCATAGAGGACATGGAGGTCTCAGAGTATGCATTGGCAGAGGGTGTGATTGCTGATTCTCTGGCCAAAGCTTTTGATGGATCATATGATTTAAATGCTAATGCAAGATGGCGATCGGTCATGAGGCTTGCCACGCGTTTCAGTGGTAAAAAGCGAATGACTCATGCGATACACTGTGCCAAGATTGCAAAGGAGATCTATCTAGGTTTGAGGAAGTGCAATGATTTTAAGGTTATCTTAGACGATAAAGATCTTGAGTATCTCGAAGCTGCTTGTTTCTTGCACAATATCGGAATCATCACAGGGAAAAAGGGTTATCATAAGCAATCTTATCATATCATCAAGAATGGGGATCATCTCCACAGCTACACTGCTGAGGAAATCGAGCTTATAGCTATGCTTGTGAGATACCAAAGAAAAAAGTTTCCCAAGCTTGATCGTGCACCTCTTAAGGGCTTCACTGGGGAGGCAAAGCGAAAATTCATAATTTTGTGTTTGATTACACGATTATCAGTTACACTTCAACGGAATGAGAATATGGATCTCCAAGAAGTTGAATTTATTGAATCTTCCGAGATCTTCAAACTCGTGCTGAAAAGACAACACCAGGAACCGGTAGAGGTTGGTTGTCAAGATCAAGTAAACAAAAACTCTGATGAATCACAACTGGAGAAAGAAGTTGAGCATTTTAAAAGGCTATACAAAAAGGAAATGGTGATTGTTTTTCCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD Ppx-GppA

Protein Analysis

320

Amino Acids

37.2

Weight (kDa)

9.14

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ppx-GppA PF02541 29 - 99 1.7e-08 Ppx/GppA phosphatase family
Ppx-GppA_III PF21447 112 - 273 6.4e-21 Ppx/GppA phosphatase, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccII CGCG 1 cut(s) 364
AciI CCGC 1 cut(s) 4
AclWI GGATC 3 cut(s) 316, 588, 777
AcoI YGGCCR 1 cut(s) 291
AcsI RAATTY 2 cut(s) 707, 785
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 680, 841
AflII CTTAAG 2 cut(s) 25, 677
AflIII ACRYGT 1 cut(s) 362
AgeI ACCGGT 1 cut(s) 841
AgsI TTSAA 6 cut(s) 166, 220, 752, 785, 794, 811
AjnI CCWGG 2 cut(s) 58, 834
AluBI AGCT 9 cut(s) 97, 118, 142, 299, 497, 594, 616, 623, 661
AluI AGCT 9 cut(s) 97, 118, 142, 299, 497, 594, 616, 623, 661
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 2 cut(s) 126, 253
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 3 cut(s) 316, 588, 777
AoxI GGCC 1 cut(s) 291
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 2 cut(s) 102, 497
ApoI RAATTY 2 cut(s) 707, 785
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AsiGI ACCGGT 1 cut(s) 841
AsuHPI GGTGA 2 cut(s) 58, 955
AsuII TTCGAA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 293
BauI CACGAG 1 cut(s) 815
Bbv12I GWGCWC 1 cut(s) 673
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 114, 484
BccI CCATC 2 cut(s) 299, 330
BciT130I CCWGG 2 cut(s) 60, 836
BcoDI GTCTC 2 cut(s) 126, 253
BfaI CTAG 1 cut(s) 431
BfrI CTTAAG 2 cut(s) 25, 677
BglII AGATCT 3 cut(s) 423, 478, 804
BisI GCNGC 2 cut(s) 103, 498
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 2 cut(s) 104, 499
Bme1390I CCNGG 2 cut(s) 60, 836
BmiI GGNNCC 1 cut(s) 840
BmrFI CCNGG 2 cut(s) 60, 836
BmrI ACTGGG 1 cut(s) 699
BmuI ACTGGG 1 cut(s) 699
BpmI CTGGAG 2 cut(s) 97, 917
Bpu10I CCTNAGC 1 cut(s) 603
Bpu1102I GCTNAGC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 503
BsaBI GATNNNNATC 2 cut(s) 340, 477
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 2 cut(s) 680, 841
Bse118I RCCGGY 1 cut(s) 841
Bse1I ACTGG 3 cut(s) 80, 694, 900
Bse3DI GCAATG 1 cut(s) 454
Bse8I GATNNNNATC 2 cut(s) 340, 477
BseBI CCWGG 2 cut(s) 60, 836
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 21
BseJI GATNNNNATC 2 cut(s) 340, 477
BseLI CCNNNNNNNGG 2 cut(s) 680, 841
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 3 cut(s) 89, 264, 594
BseNI ACTGG 3 cut(s) 80, 694, 900
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 2 cut(s) 114, 484
BseYI CCCAGC 1 cut(s) 191
Bsh1236I CGCG 1 cut(s) 364
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 1 cut(s) 293
BshTI ACCGGT 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 842
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 680, 841
BsmAI GTCTC 2 cut(s) 126, 253
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 673
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 3 cut(s) 90, 263, 595
BspFNI CGCG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 840
BspPI GGATC 3 cut(s) 316, 588, 777
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 148
BspTI CTTAAG 2 cut(s) 25, 677
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 841
BsrI ACTGG 3 cut(s) 80, 694, 900
BssAI RCCGGY 1 cut(s) 841
BssECI CCNNGG 1 cut(s) 59
BssSI CACGAG 1 cut(s) 815
Bst2BI CACGAG 1 cut(s) 815
Bst2UI CCWGG 2 cut(s) 60, 836
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 2 cut(s) 44, 132
BstAFI CTTAAG 2 cut(s) 25, 677
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 4 cut(s) 98, 250, 466, 603
BstF5I GGATG 1 cut(s) 21
BstFNI CGCG 1 cut(s) 364
BstMAI GTCTC 2 cut(s) 126, 253
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 361, 413
BstNI CCWGG 2 cut(s) 60, 836
BstSCI CCNGG 2 cut(s) 58, 834
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 114, 484
BstX2I RGATCY 4 cut(s) 423, 478, 769, 804
BstYI RGATCY 4 cut(s) 423, 478, 769, 804
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 21
BtsI GCAGTG 2 cut(s) 130, 597
BtsIMutI CAGTG 5 cut(s) 130, 376, 400, 597, 687
Cac8I GCNNGC 1 cut(s) 357
CciI TCATGA 1 cut(s) 348
Cfr10I RCCGGY 1 cut(s) 841
Csp6I GTAC 1 cut(s) 87
CspAI ACCGGT 1 cut(s) 841
CviAII CATG 3 cut(s) 241, 349, 392
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 4 cut(s) 98, 250, 466, 603
DraI TTTAAA 2 cut(s) 321, 919
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 291
Eam1104I CTCTTC 2 cut(s) 44, 132
EarI CTCTTC 2 cut(s) 44, 132
Eco31I GGTCTC 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 58, 834
EcoT22I ATGCAT 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 3 cut(s) 244, 352, 395
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 240, 348, 391
FauNDI CATATG 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 103, 498
FokI GGATG 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 103, 498
FspBI CTAG 1 cut(s) 431
GluI GCNGC 2 cut(s) 103, 498
GsaI CCCAGC 1 cut(s) 195
GsuI CTGGAG 2 cut(s) 97, 917
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 842
Hin1II CATG 3 cut(s) 244, 352, 395
HindIII AAGCTT 2 cut(s) 297, 659
HinfI GANTC 6 cut(s) 145, 284, 388, 522, 794, 887
HpaII CCGG 1 cut(s) 842
HphI GGTGA 2 cut(s) 58, 955
Hpy166II GTNNAC 2 cut(s) 671, 871
Hpy188I TCNGA 5 cut(s) 178, 253, 521, 802, 883
Hpy188III TCNNGA 7 cut(s) 166, 349, 482, 491, 571, 860, 960
Hpy8I GTNNAC 2 cut(s) 671, 871
HpyAV CCTTC 2 cut(s) 122, 144
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4V TGCA 7 cut(s) 123, 260, 332, 416, 447, 511, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 361, 413
HpyF3I CTNAG 4 cut(s) 98, 250, 466, 603
Hsp92II CATG 3 cut(s) 244, 352, 395
LguI GCTCTTC 1 cut(s) 132
Lsp1109I GCAGC 2 cut(s) 114, 484
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 742
MboII GAAGA 5 cut(s) 61, 149, 183, 789, 799
MflI RGATCY 4 cut(s) 423, 478, 769, 804
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 3 cut(s) 707, 714, 785
MluI ACGCGT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 293
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 293
MseI TTAA 5 cut(s) 26, 320, 456, 678, 918
Msp20I TGGCCA 1 cut(s) 293
MspCI CTTAAG 2 cut(s) 25, 677
MspI CCGG 1 cut(s) 842
MspR9I CCNGG 2 cut(s) 60, 836
MvaI CCWGG 2 cut(s) 60, 836
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 361, 413
NdeI CATATG 1 cut(s) 313
NlaIII CATG 3 cut(s) 244, 352, 395
NlaIV GGNNCC 1 cut(s) 840
NsiI ATGCAT 1 cut(s) 262
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 132
PfeI GAWTC 5 cut(s) 145, 284, 522, 794, 887
PinAI ACCGGT 1 cut(s) 841
PkrI GCNGC 2 cut(s) 104, 499
Ple19I CGATCG 1 cut(s) 344
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 58, 834
PspFI CCCAGC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 58, 834
PspN4I GGNNCC 1 cut(s) 840
PsuI RGATCY 4 cut(s) 423, 478, 769, 804
PvuI CGATCG 1 cut(s) 344
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 26, 320, 456, 678, 918
SatI GCNGC 2 cut(s) 103, 498
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 60, 836
SduI GDGCHC 1 cut(s) 673
SfuI TTCGAA 1 cut(s) 148
SmiI ATTTAAAT 1 cut(s) 321
SmlI CTYRAG 3 cut(s) 25, 482, 677
SmoI CTYRAG 3 cut(s) 25, 482, 677
Sse9I AATT 3 cut(s) 707, 714, 785
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 216
SspMI CTAG 1 cut(s) 431
StyD4I CCNGG 2 cut(s) 58, 834
SwaI ATTTAAAT 1 cut(s) 321
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 4 cut(s) 32, 148, 492, 612
TaqII GACCGA 1 cut(s) 334
TasI AATT 3 cut(s) 707, 714, 785
TfiI GAWTC 5 cut(s) 145, 284, 522, 794, 887
Tru1I TTAA 5 cut(s) 26, 320, 456, 678, 918
Tru9I TTAA 5 cut(s) 26, 320, 456, 678, 918
TscAI CASTG 5 cut(s) 130, 376, 407, 604, 694
TseI GCWGC 2 cut(s) 102, 497
TspDTI ATGAA 3 cut(s) 172, 700, 900
TspGWI ACGGA 1 cut(s) 769
TspRI CASTG 5 cut(s) 130, 376, 407, 604, 694
Vha464I CTTAAG 2 cut(s) 25, 677
VneI GTGCAC 1 cut(s) 669
XapI RAATTY 2 cut(s) 707, 785
XspI CTAG 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.