Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8143530.1

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 581

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8143530.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 580 bp

atgatcataatccgagcctacccagatggcaagttcctcaccattgatcgtctcagagagcctgtggttcttggccgtgacacatcatcatccacaaccccttttacactctcagctcaatctcagctcattgctattgaggccctgaagaagtttcagaacacattgatctcctacaaaatcagcaaagctcaaatccgctgtgttgcaacagcagctgtgcgtgaggctgtgaataaaggtgagttcttgaaatgtgttagtgagaagataggttttgaggttgacgtgttgcctggtgaagaagaagctaggcttgtgtatctgggtatgcttcagttttggcctatatatgagaaattggttctgggtgttgatatcggaggtgggtctactgagtttgtgattgggaagcaggggaaagttgtttttggggcttcattgaagttggggcatgtgaatttgacccagaaatttggaagcaataaagaaaaggttgctcagattagggagcatattgggttggttgttaaagaatctgggttggttaggaagattaaagattgtggctttgaagttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

193

Amino Acids

21.26

Weight (kDa)

9.22

Isoelectric Point (pI)

24.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	392
AciI	CCGC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	2 cut(s)	460, 473
AcuI	CTGAAG	2 cut(s)	167, 320
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	253, 445, 575
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	116, 127, 191, 218, 311
AluI	AGCT	5 cut(s)	116, 127, 191, 218, 311
Alw26I	GTCTC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	3 cut(s)	73, 141, 344
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	2 cut(s)	460, 473
AspS9I	GGNCC	1 cut(s)	142
AsuHPI	GGTGA	3 cut(s)	31, 254, 311
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	8
Bse3DI	GCAATG	1 cut(s)	129
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	89
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	5 cut(s)	67, 126, 137, 387, 515
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	3 cut(s)	75, 143, 346
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsnI	GGCC	3 cut(s)	75, 143, 346
Bsp143I	GATC	3 cut(s)	3, 46, 168
BspACI	CCGC	1 cut(s)	199
BspANI	GGCC	3 cut(s)	75, 143, 346
BspCNI	CTCAG	5 cut(s)	66, 125, 136, 388, 514
BsrDI	GCAATG	1 cut(s)	129
BssMI	GATC	3 cut(s)	3, 46, 168
Bst2UI	CCWGG	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	53, 112, 123, 396, 501
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	6, 49, 171
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	3, 46, 168
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 215
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	227
BstXI	CCANNNNNNTGG	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	75, 143, 346
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	455
DdeI	CTNAG	5 cut(s)	53, 112, 123, 396, 501
DpnI	GATC	3 cut(s)	5, 48, 170
DpnII	GATC	3 cut(s)	3, 46, 168
EaeI	YGGCCR	1 cut(s)	73
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	167, 320
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	458
FaiI	YATR	7 cut(s)	8, 332, 350, 352, 354, 456, 516
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	1 cut(s)	454
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	76
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	75, 143, 346
Hin1II	CATG	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	3 cut(s)	31, 254, 311
Hpy166II	GTNNAC	2 cut(s)	286, 393
Hpy188I	TCNGA	5 cut(s)	14, 56, 159, 383, 504
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	286, 393
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 215
HpyF3I	CTNAG	5 cut(s)	53, 112, 123, 396, 501
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 46, 168
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	3 cut(s)	5, 48, 170
MboI	GATC	3 cut(s)	3, 46, 168
MboII	GAAGA	5 cut(s)	160, 280, 314, 317, 565
MluCI	AATT	3 cut(s)	359, 460, 473
MnlI	CCTC	5 cut(s)	47, 133, 220, 274, 377
MseI	TTAA	2 cut(s)	531, 558
MspA1I	CMGCKG	2 cut(s)	201, 218
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	140, 215
NdeII	GATC	3 cut(s)	3, 46, 168
NlaIII	CATG	1 cut(s)	458
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	531, 558
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	3 cut(s)	3, 46, 168
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	359, 460, 473
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	295
TaiI	ACGT	1 cut(s)	291
TasI	AATT	3 cut(s)	359, 460, 473
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	531, 558
Tru9I	TTAA	2 cut(s)	531, 558
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	429
XapI	RAATTY	2 cut(s)	460, 473
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.