Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Reverse (-)

43364228 .. 43367803

Gene Structure 3576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGGCACAAACTCATTCAAGATGATCATAATCCGAGCCTACCCAGATGGCAAGTTCCTCACCATTGATCATCTCAGAGAGCCTGTGGTTCTTGGCCGTGACACATCATCATCCACAACCCCTTTTACACTCTCAGCTCAATCTCAGCTCATTGCTATTGAGGCCCTGAAGAAGTTTCAGAAAACATTGACCTCCTACAAAATCAGCAAAGCTCAAATCCGCTGTGTTGCCACTGCAGCTGTGCGTGAGGCTGTGAATAAAGGTGAGTTCTTGAAATGTGTTAGTGAGAAGACAGGTTTAGAGATTGATGTGTTGCCTGGTGAAGAAGAAGCTAGGCTTGTGTATCTGGGTATGCTTCAGTTTTGGCCTATATATGAGAAATTGGTTCTGGGTGTTGATATCGGAGGTGGGTCTACTGAGTTTGTGATTGGGAAGCAGGGGAAAGTTGTTTTTGGGGCTTCATTGAAGTTGGGGCATGTGAATTTGACCCAGAAATTTGGGAGCAATAAAGAAAAGGTTGCTCAGATTAGGGAGCATATTAGGTTGGTTATTAAAGAATCTGGGTTGGTTAGGAAGATTAAAGATTGTGGCTTTGAAGTTGTTGTTGGGTCCTCTGGTACTATTAAGGCAGTTGAGAAGGCAGTGTTTGATGGGTATGTGAATAAGAGCAATGTGATTGAGGTTAGCAATGTGGCTTCTTTTGGGGATGGTAGGAAAGATTGGAGGTTGAGTAGAGGAGAAGTGAAGGGTGTTGTTGAGAGTTTGTGTGGTGGAGGAGAGGGAGAGAAGATTAGGAGAGAAAAGTTCTTCCAAAGGCGGTCTGAGTTTATTGTTGCTGGGGCTGTGTTGTTGGAGGAGATATTTGAGGTGCTTGGAATTGAGGAAATGGAGGTTTCTGGTTATGCATTGGCAGAAGGTGTAATTGCAGAAAGTTTGGCTAAGGTTAACGGTGGCTATGATCTGAATGCCAATGCAGGGTGGTCATCTATTGTTCGGCTTGCGATGAGGTATAATGGCAAGAAGAGGATGAAAGCTGCTTCTCAGTGTGCCATCATTGCAAAGGAGATTTTTGAAGGTTTAAGAAAATGTGATGACCTAGCTGATAATCATGCTGCCTCCTTAGATGACAAGGATCTTGAATATCTTGAAGCTGCAAGCTTGCTTCACAATATTGGGGTTTTCATTGGGAAAAAAGGTTACCACAAGCATTCTTATTGTATTATCATGAATGGCGAGCATCTCCATGGTTACAGTTCTGAGGAGGTTAAGCTGATAGCTCTACTTGCAAGACATCATAGGAAGCAATTACCAAGCTTTGATCCTACTTGCTTTCAACAGTTTCCAAGAGAGATCACAAAGAAATTCAGATATCTATGCACAATTATCCGTGTTTCTTTTGCACTACAACAAATGGAATTCTCAAACTATGAAGGTTTTAAGCTGGTAAGCTGTGTTGTAAAAGATCAAACCTCTTTACATGTTGTAAACCCTCTAGCTGAGGATATTGAGGATGAACTAAGAGAAGAATTGGAACAGTTCAAACTGGTATTCCTTAAAGAGCTGCTCATTGTTGCTCCTTTGAGTGTTCCAGATATGATGGATATTCGCATAAAAGATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

541

Amino Acids

60.25

Weight (kDa)

7.92

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ppx-GppA	PF02541	16 - 313	4.5e-49	Ppx/GppA phosphatase family
Ppx-GppA_III	PF21447	344 - 473	3.2e-17	Ppx/GppA phosphatase, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	413
AciI	CCGC	2 cut(s)	220, 817
AclWI	GGATC	2 cut(s)	1140, 1313
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	4 cut(s)	481, 494, 1361, 1415
AcuI	CTGAAG	2 cut(s)	188, 341
AfaI	GTAC	1 cut(s)	619
AfiI	CCNNNNNNNGG	1 cut(s)	975
AflIII	ACRYGT	1 cut(s)	1477
AgsI	TTSAA	9 cut(s)	19, 274, 466, 596, 1073, 1139, 1148, 1334, 1540
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	588, 620
AlwI	GGATC	2 cut(s)	1140, 1313
AoxI	GGCC	3 cut(s)	94, 162, 365
ApeKI	GCWGC	5 cut(s)	236, 1034, 1112, 1151, 1561
ApoI	RAATTY	4 cut(s)	481, 494, 1361, 1415
AspS9I	GGNCC	2 cut(s)	163, 609
AsuHPI	GGTGA	3 cut(s)	52, 275, 332
AvaII	GGWCC	1 cut(s)	609
BaeGI	GKGCMC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	296
BbvCI	CCTCAGC	1 cut(s)	1497
BbvI	GCAGC	5 cut(s)	248, 1021, 1099, 1138, 1548
BccI	CCATC	5 cut(s)	41, 644, 701, 1058, 1591
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	2 cut(s)	24, 67
BfaI	CTAG	3 cut(s)	333, 1097, 1493
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	5 cut(s)	237, 1035, 1113, 1152, 1562
BlsI	GCNGC	5 cut(s)	238, 1036, 1114, 1153, 1563
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	163, 609
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	1246
BpiI	GAAGAC	1 cut(s)	296
Bpu10I	CCTNAGC	2 cut(s)	939, 1497
BsaBI	GATNNNNATC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	1243
BsaXI	ACNNNNNCTCC	2 cut(s)	715, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	975
Bse1I	ACTGG	1 cut(s)	1548
Bse3DI	GCAATG	4 cut(s)	150, 676, 694, 1053
Bse8I	GATNNNNATC	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	1243
BseGI	GGATG	4 cut(s)	110, 712, 1032, 1516
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	975
BseMI	GCAATG	4 cut(s)	150, 676, 694, 1053
BseMII	CTCAG	9 cut(s)	88, 147, 158, 408, 536, 813, 1055, 1248, 1488
BseNI	ACTGG	1 cut(s)	1548
BseRI	GAGGAG	4 cut(s)	750, 789, 869, 1274
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	248, 1021, 1099, 1138, 1548
BseYI	CCCAGC	1 cut(s)	836
BshFI	GGCC	3 cut(s)	96, 164, 367
BslI	CCNNNNNNNGG	1 cut(s)	975
BsmI	GAATGC	2 cut(s)	970, 1207
BsnI	GGCC	3 cut(s)	96, 164, 367
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
Bsp19I	CCATGG	1 cut(s)	1243
BspACI	CCGC	2 cut(s)	220, 817
BspANI	GGCC	3 cut(s)	96, 164, 367
BspCNI	CTCAG	9 cut(s)	87, 146, 157, 409, 535, 814, 1054, 1249, 1489
BspHI	TCATGA	1 cut(s)	1224
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	2 cut(s)	1140, 1313
BsrDI	GCAATG	4 cut(s)	150, 676, 694, 1053
BsrI	ACTGG	1 cut(s)	1548
BssECI	CCNNGG	1 cut(s)	1243
BssMI	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
BssT1I	CCWWGG	1 cut(s)	1243
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	4 cut(s)	950, 1253, 1338, 1536
Bst6I	CTCTTC	1 cut(s)	1016
BstC8I	GCNNGC	4 cut(s)	999, 1156, 1160, 1235
BstDSI	CCRYGG	1 cut(s)	1243
BstEII	GGTNACC	1 cut(s)	1196
BstF5I	GGATG	4 cut(s)	110, 712, 1032, 1516
BstKTI	GATC	7 cut(s)	27, 70, 961, 1135, 1321, 1353, 1465
BstMBI	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 236, 1055, 1283
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	479, 1481
BstPI	GGTNACC	1 cut(s)	1196
BstSCI	CCNGG	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	248, 1021, 1099, 1138, 1548
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	1132
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	1132
BsuRI	GGCC	3 cut(s)	96, 164, 367
BtgI	CCRYGG	1 cut(s)	1243
BtgZI	GCGATG	1 cut(s)	1016
BtsCI	GGATG	4 cut(s)	110, 712, 1032, 1516
BtsI	GCAGTG	2 cut(s)	231, 648
BtsIMutI	CAGTG	3 cut(s)	231, 648, 1049
Cac8I	GCNNGC	4 cut(s)	999, 1156, 1160, 1235
CciI	TCATGA	1 cut(s)	1224
Cfr13I	GGNCC	2 cut(s)	163, 609
Csp6I	GTAC	1 cut(s)	618
CviAII	CATG	5 cut(s)	476, 1109, 1225, 1244, 1478
CviQI	GTAC	1 cut(s)	618
DpnI	GATC	7 cut(s)	26, 69, 960, 1134, 1320, 1352, 1464
DpnII	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	1016
EarI	CTCTTC	1 cut(s)	1016
Eco130I	CCWWGG	1 cut(s)	1243
Eco32I	GATATC	2 cut(s)	400, 1370
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	188, 341
Eco91I	GGTNACC	1 cut(s)	1196
EcoO109I	RGGNCCY	2 cut(s)	163, 609
EcoO65I	GGTNACC	1 cut(s)	1196
EcoRI	GAATTC	1 cut(s)	1415
EcoRII	CCWGG	1 cut(s)	316
EcoRV	GATATC	2 cut(s)	400, 1370
EcoT14I	CCWWGG	1 cut(s)	1243
EcoT22I	ATGCAT	1 cut(s)	907
ErhI	CCWWGG	1 cut(s)	1243
FaeI	CATG	5 cut(s)	479, 1112, 1228, 1247, 1481
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	5 cut(s)	475, 1108, 1224, 1243, 1477
FbaI	TGATCA	2 cut(s)	24, 67
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	5 cut(s)	237, 1035, 1113, 1152, 1562
FokI	GGATG	4 cut(s)	97, 719, 1039, 1523
Fsp4HI	GCNGC	5 cut(s)	237, 1035, 1113, 1152, 1562
FspBI	CTAG	3 cut(s)	333, 1097, 1493
GluI	GCNGC	5 cut(s)	237, 1035, 1113, 1152, 1562
GsaI	CCCAGC	1 cut(s)	840
HaeIII	GGCC	3 cut(s)	96, 164, 367
Hin1II	CATG	5 cut(s)	479, 1112, 1228, 1247, 1481
HincII	GTYRAC	1 cut(s)	946
HindII	GTYRAC	1 cut(s)	946
HindIII	AAGCTT	2 cut(s)	1156, 1312
HinfI	GANTC	1 cut(s)	557
HpaI	GTTAAC	1 cut(s)	946
HphI	GGTGA	3 cut(s)	52, 275, 332
Hpy166II	GTNNAC	3 cut(s)	414, 946, 1486
Hpy188I	TCNGA	9 cut(s)	35, 77, 180, 404, 525, 823, 963, 1258, 1367
Hpy188III	TCNNGA	6 cut(s)	19, 271, 1136, 1145, 1225, 1589
Hpy8I	GTNNAC	3 cut(s)	414, 946, 1486
HpyAV	CCTTC	5 cut(s)	631, 739, 908, 1067, 1424
HpyCH4III	ACNGT	4 cut(s)	950, 1253, 1338, 1536
HpyCH4V	TGCA	9 cut(s)	236, 905, 926, 974, 1058, 1154, 1286, 1377, 1400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 236, 1055, 1283
Hsp92II	CATG	5 cut(s)	479, 1112, 1228, 1247, 1481
Ksp22I	TGATCA	2 cut(s)	24, 67
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
LmnI	GCTCC	3 cut(s)	501, 532, 1579
Lsp1109I	GCAGC	5 cut(s)	248, 1021, 1099, 1138, 1548
LweI	GCATC	1 cut(s)	1246
MaeI	CTAG	3 cut(s)	333, 1097, 1493
MaeIII	GTNAC	3 cut(s)	98, 1196, 1247
MalI	GATC	7 cut(s)	26, 69, 960, 1134, 1320, 1352, 1464
MboI	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
MboII	GAAGA	9 cut(s)	181, 301, 335, 338, 586, 799, 799, 1033, 1535
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	831
Mph1103I	ATGCAT	1 cut(s)	907
MseI	TTAA	8 cut(s)	552, 579, 624, 945, 1079, 1266, 1437, 1554
MslI	CAYNNNNRTG	1 cut(s)	1242
MspA1I	CMGCKG	2 cut(s)	222, 239
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	2 cut(s)	970, 1207
MvaI	CCWGG	1 cut(s)	318
MwoI	GCNNNNNNNGC	4 cut(s)	161, 236, 1055, 1283
NcoI	CCATGG	1 cut(s)	1243
NdeII	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
NlaIII	CATG	5 cut(s)	479, 1112, 1228, 1247, 1481
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	907
NspI	RCATGY	2 cut(s)	479, 1481
PagI	TCATGA	1 cut(s)	1224
PciI	ACATGT	1 cut(s)	1477
PctI	GAATGC	2 cut(s)	970, 1207
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	5 cut(s)	238, 1036, 1114, 1153, 1563
PpuMI	RGGWCCY	1 cut(s)	609
PscI	ACATGT	1 cut(s)	1477
Psp5II	RGGWCCY	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	316
PspEI	GGTNACC	1 cut(s)	1196
PspFI	CCCAGC	1 cut(s)	836
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	163, 609
PspPPI	RGGWCCY	1 cut(s)	609
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	1132
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	619
RsaNI	GTAC	1 cut(s)	618
RseI	CAYNNNNRTG	1 cut(s)	1242
SaqAI	TTAA	8 cut(s)	552, 579, 624, 945, 1079, 1266, 1437, 1554
SatI	GCNGC	5 cut(s)	237, 1035, 1113, 1152, 1562
Sau3AI	GATC	7 cut(s)	24, 67, 958, 1132, 1318, 1350, 1462
Sau96I	GGNCC	2 cut(s)	163, 609
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	1246
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	1242
SsiI	CCGC	2 cut(s)	220, 817
SspI	AATATT	1 cut(s)	1171
SspMI	CTAG	3 cut(s)	333, 1097, 1493
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	1 cut(s)	1243
TaaI	ACNGT	4 cut(s)	950, 1253, 1338, 1536
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	8 cut(s)	552, 579, 624, 945, 1079, 1266, 1437, 1554
Tru9I	TTAA	8 cut(s)	552, 579, 624, 945, 1079, 1266, 1437, 1554
TscAI	CASTG	3 cut(s)	238, 648, 1049
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	5 cut(s)	236, 1034, 1112, 1151, 1561
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	6 cut(s)	450, 1043, 1171, 1241, 1443, 1527
TspGWI	ACGGA	1 cut(s)	1376
TspRI	CASTG	3 cut(s)	238, 648, 1049
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	4 cut(s)	481, 494, 1361, 1415
XceI	RCATGY	2 cut(s)	479, 1481
XmiI	GTMKAC	1 cut(s)	413
XspI	CTAG	3 cut(s)	333, 1097, 1493
Zsp2I	ATGCAT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.