Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Forward (+)

4305469 .. 4313955

Gene Structure 8487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGCTTCTTCTTCTTGTTCTTCATCACTCTTTGCAGCCATTGACATGGGCACAAACTCATTCAAGATGATCATAATCCGAGCCTACCCAAATGGCAAGTTCCTCACCATTGATCGTCTCAGAGAGCCTGTTGTTCTTGGCCGTGAAACCACTCCCACATCATCATCATCAACCCCTTTTACACTCTCAGCTCAATCTCAGCTCATTGCTCTTGAGGCTCTCAAGAAGTTTCAGAACACGTTGACATCATACAAAGTCAGCAAAGCCCAAGTCCGCTGTGTTGCCACTGCTGCTGTGCGTGAGGCTGTGAATAAAGGTGTGTTCTTGAAATGTGTTAGTGATAACATTGGTTTAGAGGTTGATGTGTTGCCTGGTGAAGAGGAAGCTAGGCTTGTGTATTTGGGTATGCTTCAGTTTTGGCCTATGTATGAGAATTTGGTTTTGGGTGTTGATATTGGAGGTGGGTCTACTGAGTTTGTGATTGGGAAGCAGGGGATAGTTGTTTTTGGTGCTTCATTGAAGTTGGGGCATGTGAGTTTGACCCAGAAATTTGGGAACAGTGTTGGTCAGATTAGGGAGCATATTAGGTTGGTTGTTAAAGAATCTGGGTTGGTTAGGAAGATTAAAAATTGTGGCTTTGAGGTTGTTGTTGGATCCTCTGGTACTATTAAGGCAGTCGAGAAGGCAGTGTTTAATGGGTATGTGAATAAGAGCAATGTGATTGAGGTTGGCAATGTAGCTTGTATAGGGGATGGTAGGAAGGATTGGAGGTTGAGTAGAGGAGAAGTGAAGGGTGTTGTTGAGAGTTTGTGTGGTGGAGGAGAGGGAGAGAAGATTAGGAGGGAGAAGTTCTTTGAAAGGCGGTCTGAGTTTATTGTTGCTGGGGCTGTGTTGTTGGAGGAGATATTTGAGGTGCTTGGAATTGAGGAAATGGAGGTTTCTGGTTATGCATTGGCAGAAGGTGTTATTGTAGAAAGTTTGGCTAAGGTTAATGGTGGGTATGATTTGACTGCCAATGCAAGGTGGTCTTCTGTTGTTCGGCTTGCGATGAGGTATAATGGCAAGAAGAGGATGAGAGCTGCTGTTCAGTGTACAAACACTGCAAAGGAGATTTTTGAAGGTTTAAGAAAAAGTGATGACCTAGCTGATAATCAATTTGCTGCCTCCCTAGATGACAAGGATCTTGAATATCTTGAAGCTGCAACTTTGCTTCACAATATTGGGGTTTTCATGGGGAAAAAAGGTTACCATAAGCACTCATACTGCATCATCATGAATGGTGAGCATCTCCATGGTTACAGTTCTGAGGAGGTTAAGCTGATAGCACTACTTGCAAGACATCATAGGAAGAAATTACCAAGCTCTGATCATGCTTCCTTTACACAATTTCCAGGAGAGATGACAAAGAAATTCAGATTTCTATGCACAATTCTCCGTGTTTCTGTTGCACTACAGAAAATGGAATTCTCAAATTCTTATGAAGGCTTTAAGCTGGTATTTCTCTGCTCTGGTTTCCAACCAACTCTCCCTTATAGAGTGGGTTTTTTTCTCTTTGCAGTTGTAGAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

524

Amino Acids

57.57

Weight (kDa)

8.89

Isoelectric Point (pI)

31.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ppx-GppA	PF02541	32 - 329	9.6e-47	Ppx/GppA phosphatase family
Ppx-GppA_III	PF21447	341 - 487	4.3e-19	Ppx/GppA phosphatase, domain III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	467
AciI	CCGC	2 cut(s)	274, 862
AclWI	GGATC	3 cut(s)	648, 661, 1188
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	5 cut(s)	433, 548, 1409, 1463, 1471
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	2 cut(s)	664, 1093
AfiI	CCNNNNNNNGG	1 cut(s)	1020
AflIII	ACRYGT	1 cut(s)	237
AgsI	TTSAA	7 cut(s)	64, 328, 520, 857, 1118, 1187, 1196
AjnI	CCWGG	2 cut(s)	370, 1390
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	648, 661, 1188
AoxI	GGCC	2 cut(s)	139, 419
ApeKI	GCWGC	5 cut(s)	35, 290, 1079, 1160, 1199
ApoI	RAATTY	5 cut(s)	433, 548, 1409, 1463, 1471
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsuHPI	GGTGA	3 cut(s)	97, 386, 1292
BaeGI	GKGCMC	1 cut(s)	53
BamHI	GGATCC	1 cut(s)	653
BbsI	GAAGAC	1 cut(s)	1020
BbvI	GCAGC	5 cut(s)	47, 277, 1066, 1147, 1186
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	372, 1392
BclI	TGATCA	2 cut(s)	69, 1366
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	3 cut(s)	387, 1142, 1169
BfmI	CTRYAG	1 cut(s)	1451
BisI	GCNGC	5 cut(s)	36, 291, 1080, 1161, 1200
BlsI	GCNGC	5 cut(s)	37, 292, 1081, 1162, 1201
Bme1390I	CCNGG	2 cut(s)	372, 1392
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	2 cut(s)	372, 1392
BmsI	GCATC	2 cut(s)	1275, 1294
BpiI	GAAGAC	1 cut(s)	1020
Bpu10I	CCTNAGC	1 cut(s)	984
BpuEI	CTTGAG	2 cut(s)	206, 233
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	1291
BsaXI	ACNNNNNCTCC	4 cut(s)	760, 790, 1509, 1539
Bsc4I	CCNNNNNNNGG	1 cut(s)	1020
Bse3DI	GCAATG	3 cut(s)	204, 721, 739
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	372, 1392
BseDI	CCNNGG	1 cut(s)	1291
BseGI	GGATG	2 cut(s)	757, 1077
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	1020
BseMI	GCAATG	3 cut(s)	204, 721, 739
BseMII	CTCAG	6 cut(s)	133, 201, 212, 462, 858, 1296
BseRI	GAGGAG	4 cut(s)	795, 834, 914, 1322
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	47, 277, 1066, 1147, 1186
BseYI	CCCAGC	1 cut(s)	881
BshFI	GGCC	2 cut(s)	141, 421
BslI	CCNNNNNNNGG	1 cut(s)	1020
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	141, 421
Bsp1286I	GDGCHC	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	1091
Bsp143I	GATC	5 cut(s)	69, 112, 653, 1180, 1366
Bsp19I	CCATGG	1 cut(s)	1291
BspACI	CCGC	2 cut(s)	274, 862
BspANI	GGCC	2 cut(s)	141, 421
BspCNI	CTCAG	6 cut(s)	132, 200, 211, 463, 859, 1297
BspHI	TCATGA	1 cut(s)	1272
BspLI	GGNNCC	1 cut(s)	655
BspPI	GGATC	3 cut(s)	648, 661, 1188
BsrDI	GCAATG	3 cut(s)	204, 721, 739
BsrGI	TGTACA	1 cut(s)	1091
BssECI	CCNNGG	1 cut(s)	1291
BssMI	GATC	5 cut(s)	69, 112, 653, 1180, 1366
BssT1I	CCWWGG	1 cut(s)	1291
Bst2UI	CCWGG	2 cut(s)	372, 1392
Bst4CI	ACNGT	2 cut(s)	560, 1301
Bst6I	CTCTTC	2 cut(s)	372, 1061
BstAPI	GCANNNNNTGC	1 cut(s)	1331
BstAUI	TGTACA	1 cut(s)	1091
BstC8I	GCNNGC	1 cut(s)	1044
BstDEI	CTNAG	7 cut(s)	119, 187, 198, 471, 867, 984, 1305
BstDSI	CCRYGG	1 cut(s)	1291
BstEII	GGTNACC	1 cut(s)	1244
BstF5I	GGATG	2 cut(s)	757, 1077
BstKTI	GATC	5 cut(s)	72, 115, 656, 1183, 1369
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	5 cut(s)	69, 112, 653, 1180, 1366
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 290, 1331
BstNI	CCWGG	2 cut(s)	372, 1392
BstNSI	RCATGY	1 cut(s)	533
BstPI	GGTNACC	1 cut(s)	1244
BstSCI	CCNGG	2 cut(s)	370, 1390
BstSFI	CTRYAG	1 cut(s)	1451
BstSLI	GKGCMC	1 cut(s)	53
BstV1I	GCAGC	5 cut(s)	47, 277, 1066, 1147, 1186
BstV2I	GAAGAC	1 cut(s)	1020
BstX2I	RGATCY	2 cut(s)	653, 1180
BstXI	CCANNNNNNTGG	2 cut(s)	46, 551
BstYI	RGATCY	2 cut(s)	653, 1180
BsuRI	GGCC	2 cut(s)	141, 421
BtgI	CCRYGG	1 cut(s)	1291
BtgZI	GCGATG	1 cut(s)	1061
BtsCI	GGATG	2 cut(s)	757, 1077
BtsI	GCAGTG	3 cut(s)	285, 693, 1098
BtsIMutI	CAGTG	5 cut(s)	285, 565, 693, 1094, 1098
Cac8I	GCNNGC	1 cut(s)	1044
CciI	TCATGA	1 cut(s)	1272
Csp6I	GTAC	2 cut(s)	663, 1092
CviAII	CATG	6 cut(s)	46, 530, 1231, 1273, 1292, 1370
CviQI	GTAC	2 cut(s)	663, 1092
DdeI	CTNAG	7 cut(s)	119, 187, 198, 471, 867, 984, 1305
DpnI	GATC	5 cut(s)	71, 114, 655, 1182, 1368
DpnII	GATC	5 cut(s)	69, 112, 653, 1180, 1366
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	372, 1061
EarI	CTCTTC	2 cut(s)	372, 1061
Eco130I	CCWWGG	1 cut(s)	1291
Eco57I	CTGAAG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	1244
EcoO65I	GGTNACC	1 cut(s)	1244
EcoRI	GAATTC	1 cut(s)	1463
EcoRII	CCWGG	2 cut(s)	370, 1390
EcoT14I	CCWWGG	1 cut(s)	1291
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	1 cut(s)	1291
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	6 cut(s)	49, 533, 1234, 1276, 1295, 1373
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 1012, 1044
FatI	CATG	6 cut(s)	45, 529, 1230, 1272, 1291, 1369
FbaI	TGATCA	2 cut(s)	69, 1366
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	5 cut(s)	36, 291, 1080, 1161, 1200
FokI	GGATG	2 cut(s)	764, 1084
Fsp4HI	GCNGC	5 cut(s)	36, 291, 1080, 1161, 1200
FspBI	CTAG	3 cut(s)	387, 1142, 1169
GluI	GCNGC	5 cut(s)	36, 291, 1080, 1161, 1200
GsaI	CCCAGC	1 cut(s)	885
HaeIII	GGCC	2 cut(s)	141, 421
Hin1II	CATG	6 cut(s)	49, 533, 1234, 1276, 1295, 1373
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	602, 1565
HphI	GGTGA	3 cut(s)	97, 386, 1292
Hpy166II	GTNNAC	3 cut(s)	243, 468, 1092
Hpy188I	TCNGA	8 cut(s)	80, 122, 234, 570, 868, 1306, 1366, 1415
Hpy188III	TCNNGA	8 cut(s)	64, 212, 223, 325, 679, 1184, 1193, 1273
Hpy8I	GTNNAC	3 cut(s)	243, 468, 1092
HpyAV	CCTTC	6 cut(s)	676, 754, 784, 953, 1112, 1475
HpyCH4III	ACNGT	2 cut(s)	560, 1301
HpyCH4IV	ACGT	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 290, 1331
HpyF3I	CTNAG	7 cut(s)	119, 187, 198, 471, 867, 984, 1305
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	6 cut(s)	49, 533, 1234, 1276, 1295, 1373
Ksp22I	TGATCA	2 cut(s)	69, 1366
Kzo9I	GATC	5 cut(s)	69, 112, 653, 1180, 1366
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	5 cut(s)	47, 277, 1066, 1147, 1186
LweI	GCATC	2 cut(s)	1275, 1294
MaeI	CTAG	3 cut(s)	387, 1142, 1169
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	1244, 1295
MalI	GATC	5 cut(s)	71, 114, 655, 1182, 1368
MboI	GATC	5 cut(s)	69, 112, 653, 1180, 1366
MboII	GAAGA	8 cut(s)	3, 12, 389, 631, 844, 1020, 1078, 1360
MflI	RGATCY	2 cut(s)	653, 1180
MhlI	GDGCHC	1 cut(s)	53
MmeI	TCCRAC	3 cut(s)	631, 876, 1540
Mph1103I	ATGCAT	1 cut(s)	952
MseI	TTAA	8 cut(s)	597, 624, 669, 693, 990, 1124, 1314, 1488
MslI	CAYNNNNRTG	3 cut(s)	44, 1271, 1290
MspA1I	CMGCKG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	372, 1392
MvaI	CCWGG	2 cut(s)	372, 1392
MwoI	GCNNNNNNNGC	3 cut(s)	215, 290, 1331
NcoI	CCATGG	1 cut(s)	1291
NdeII	GATC	5 cut(s)	69, 112, 653, 1180, 1366
NlaIII	CATG	6 cut(s)	49, 533, 1234, 1276, 1295, 1373
NlaIV	GGNNCC	1 cut(s)	655
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	533
PagI	TCATGA	1 cut(s)	1272
PfeI	GAWTC	2 cut(s)	602, 1565
PfoI	TCCNGGA	1 cut(s)	1390
PkrI	GCNGC	5 cut(s)	37, 292, 1081, 1162, 1201
Psp6I	CCWGG	2 cut(s)	370, 1390
PspEI	GGTNACC	1 cut(s)	1244
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	2 cut(s)	370, 1390
PspN4I	GGNNCC	1 cut(s)	655
PsuI	RGATCY	2 cut(s)	653, 1180
RsaI	GTAC	2 cut(s)	664, 1093
RsaNI	GTAC	2 cut(s)	663, 1092
RseI	CAYNNNNRTG	3 cut(s)	44, 1271, 1290
SaqAI	TTAA	8 cut(s)	597, 624, 669, 693, 990, 1124, 1314, 1488
SatI	GCNGC	5 cut(s)	36, 291, 1080, 1161, 1200
Sau3AI	GATC	5 cut(s)	69, 112, 653, 1180, 1366
ScrFI	CCNGG	2 cut(s)	372, 1392
SduI	GDGCHC	1 cut(s)	53
SfaNI	GCATC	2 cut(s)	1275, 1294
SfcI	CTRYAG	1 cut(s)	1451
SmiMI	CAYNNNNRTG	3 cut(s)	44, 1271, 1290
SmlI	CTYRAG	2 cut(s)	212, 221
SmoI	CTYRAG	2 cut(s)	212, 221
SsiI	CCGC	2 cut(s)	274, 862
SspI	AATATT	1 cut(s)	1219
SspMI	CTAG	3 cut(s)	387, 1142, 1169
StyD4I	CCNGG	2 cut(s)	370, 1390
StyI	CCWWGG	1 cut(s)	1291
TaaI	ACNGT	2 cut(s)	560, 1301
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	678
TatI	WGTACW	1 cut(s)	1091
TfiI	GAWTC	2 cut(s)	602, 1565
Tru1I	TTAA	8 cut(s)	597, 624, 669, 693, 990, 1124, 1314, 1488
Tru9I	TTAA	8 cut(s)	597, 624, 669, 693, 990, 1124, 1314, 1488
TscAI	CASTG	5 cut(s)	292, 565, 693, 1094, 1105
TseI	GCWGC	5 cut(s)	35, 290, 1079, 1160, 1199
TspDTI	ATGAA	5 cut(s)	12, 504, 1219, 1289, 1494
TspGWI	ACGGA	1 cut(s)	1424
TspRI	CASTG	5 cut(s)	292, 565, 693, 1094, 1105
XapI	RAATTY	5 cut(s)	433, 548, 1409, 1463, 1471
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	3 cut(s)	387, 1142, 1169
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.