Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Forward (+)

1854864 .. 1861841

Gene Structure 6978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000542

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTATAATGGCAAGAAGAGAATGAAAGCTGTTGCTGATTGTGTTATCATCGCAAAGGAGATTTTTGAAGGTTTAAGAAAATGTGATGACCTAGTTGATAATCAATTTGCTGCCTTCCTAGATGACAAGGATCTTGAATATCTTGAAGCTGCAAGTTTCCTTCACAATATTGGGGTTTTCATTGGGAAAAAAGCTCAATCTTTGGTGTCGAATGGCGAGCATCTCCATGGTTACAAATCTGAGGACATTAAGCTGATAGCACTACTTGCAAGACATCAAAGGAAGAAATTATCAAGTTTTGATCATACTTGCTTTAAACAGTTTCCAAGAGAGGTGAAGGCGGTAGCGGAGGAAATATCTCCGAGGAATTTGAAGGCCCTCAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCCATTGACACCGTTTTGATGATTGGGTGTTTGGCTCTGGTTGTTATGTTGCAGATGAGAAGCATAGATTTGGCTTATGACGACTCAACCACACTGATTTGGACACCCAAGACCAGGGCACCCAAATGCAGTGTCGAACCACCATCATCTCCAACATCATCTGCAAATTCGGCAACTGTAGCAAACCTGGATAAGACTGGAGCCAGCCTAACAACATCGCCGATGTACACTAACGATAGCGCATCGACCACAAAGTCTCCACCGCTTGACATCCCCGCCAACAGTCAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

235

Amino Acids

25.8

Weight (kDa)

7.65

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	664
AccB1I	GGYRCC	1 cut(s)	529
AciI	CCGC	4 cut(s)	341, 347, 674, 687
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	2 cut(s)	367, 577
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	4 cut(s)	68, 137, 146, 373
AjnI	CCWGG	2 cut(s)	524, 597
AluBI	AGCT	4 cut(s)	29, 149, 194, 253
AluI	AGCT	4 cut(s)	29, 149, 194, 253
Alw26I	GTCTC	1 cut(s)	672
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	3 cut(s)	110, 149, 387
ApoI	RAATTY	2 cut(s)	367, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	528, 560
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	376
AsuHPI	GGTGA	1 cut(s)	346
AsuII	TTCGAA	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	97, 136, 399
BccI	CCATC	1 cut(s)	562
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	2 cut(s)	526, 599
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	672
BfaI	CTAG	2 cut(s)	92, 119
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	3 cut(s)	111, 150, 388
BlsI	GCNGC	3 cut(s)	112, 151, 389
Bme1390I	CCNGG	2 cut(s)	526, 599
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	531, 613
BmrFI	CCNGG	2 cut(s)	526, 599
BmsI	GCATC	2 cut(s)	229, 662
BpmI	CTGGAG	1 cut(s)	630
Bpu14I	TTCGAA	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	226, 362, 525
BsaXI	ACNNNNNCTCC	2 cut(s)	652, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	526, 599
BseDI	CCNNGG	3 cut(s)	226, 362, 525
BseGI	GGATG	1 cut(s)	681
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	3 cut(s)	97, 136, 399
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	1 cut(s)	529
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	1 cut(s)	672
BsnI	GGCC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	2 cut(s)	130, 301
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	4 cut(s)	341, 347, 674, 687
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	531, 613
BspPI	GGATC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	529
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	3 cut(s)	226, 362, 525
BssMI	GATC	2 cut(s)	130, 301
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	526, 599
Bst4CI	ACNGT	4 cut(s)	321, 424, 589, 695
Bst6I	CTCTTC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	218, 616
BstDEI	CTNAG	1 cut(s)	240
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	681
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	2 cut(s)	133, 304
BstMAI	GTCTC	1 cut(s)	672
BstMBI	GATC	2 cut(s)	130, 301
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 581, 590
BstNI	CCWGG	2 cut(s)	526, 599
BstSCI	CCNGG	2 cut(s)	524, 597
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	3 cut(s)	97, 136, 399
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	1 cut(s)	226
BtgZI	GCGATG	2 cut(s)	34, 612
BtsCI	GGATG	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	503, 547
Cac8I	GCNNGC	2 cut(s)	218, 616
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	1 cut(s)	227
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	132, 303
DpnII	GATC	2 cut(s)	130, 301
DraI	TTTAAA	1 cut(s)	316
DrdI	GACNNNNNNGTC	1 cut(s)	664
DseDI	GACNNNNNNGTC	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	2 cut(s)	524, 597
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	230
FaiI	YATR	6 cut(s)	6, 228, 306, 458, 476, 489
FatI	CATG	1 cut(s)	226
FauI	CCCGC	1 cut(s)	694
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	111, 150, 388
FokI	GGATG	1 cut(s)	668
Fsp4HI	GCNGC	3 cut(s)	111, 150, 388
FspBI	CTAG	2 cut(s)	92, 119
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	3 cut(s)	111, 150, 388
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HinfI	GANTC	1 cut(s)	494
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	2 cut(s)	241, 363
Hpy188III	TCNNGA	3 cut(s)	134, 143, 698
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	5 cut(s)	62, 124, 170, 331, 367
HpyCH4III	ACNGT	4 cut(s)	321, 424, 589, 695
HpyCH4V	TGCA	5 cut(s)	152, 269, 463, 540, 575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 581, 590
HpyF3I	CTNAG	1 cut(s)	240
Hsp92II	CATG	1 cut(s)	230
HspAI	GCGC	1 cut(s)	651
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	130, 301
LmnI	GCTCC	1 cut(s)	611
LpnPI	CCDG	7 cut(s)	434, 511, 538, 584, 594, 611, 628
Lsp1109I	GCAGC	3 cut(s)	97, 136, 399
LweI	GCATC	2 cut(s)	229, 662
MaeI	CTAG	2 cut(s)	92, 119
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	132, 303
MboI	GATC	2 cut(s)	130, 301
MboII	GAAGA	2 cut(s)	28, 295
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	5 cut(s)	104, 287, 367, 399, 577
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	5 cut(s)	235, 325, 343, 357, 389
MseI	TTAA	3 cut(s)	74, 249, 315
MslI	CAYNNNNRTG	2 cut(s)	225, 535
MspR9I	CCNGG	2 cut(s)	526, 599
MvaI	CCWGG	2 cut(s)	526, 599
MwoI	GCNNNNNNNGC	3 cut(s)	266, 581, 590
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	130, 301
NlaIII	CATG	1 cut(s)	230
NlaIV	GGNNCC	2 cut(s)	531, 613
NspV	TTCGAA	1 cut(s)	396
PkrI	GCNGC	3 cut(s)	112, 151, 389
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	524, 597
PspGI	CCWGG	2 cut(s)	524, 597
PspN4I	GGNNCC	2 cut(s)	531, 613
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	2 cut(s)	225, 535
SaqAI	TTAA	3 cut(s)	74, 249, 315
SatI	GCNGC	3 cut(s)	111, 150, 388
Sau3AI	GATC	2 cut(s)	130, 301
Sau96I	GGNCC	1 cut(s)	376
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	526, 599
SduI	GDGCHC	1 cut(s)	532
SetI	ASST	8 cut(s)	31, 73, 93, 151, 196, 255, 336, 600
SfaNI	GCATC	2 cut(s)	229, 662
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	396
SmiMI	CAYNNNNRTG	2 cut(s)	225, 535
Sse9I	AATT	5 cut(s)	104, 287, 367, 399, 577
SsiI	CCGC	4 cut(s)	341, 347, 674, 687
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	2 cut(s)	92, 119
StyD4I	CCNGG	2 cut(s)	524, 597
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	4 cut(s)	321, 424, 589, 695
TaqI	TCGA	4 cut(s)	209, 396, 546, 656
TasI	AATT	5 cut(s)	104, 287, 367, 399, 577
TatI	WGTACW	1 cut(s)	636
Tru1I	TTAA	3 cut(s)	74, 249, 315
Tru9I	TTAA	3 cut(s)	74, 249, 315
TscAI	CASTG	2 cut(s)	510, 547
TseI	GCWGC	3 cut(s)	110, 149, 387
TspDTI	ATGAA	2 cut(s)	38, 169
TspRI	CASTG	2 cut(s)	510, 547
XapI	RAATTY	2 cut(s)	367, 577
XspI	CTAG	2 cut(s)	92, 119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.