Rh3CG077800

Ppx/GppA phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003859
Physical Location & Seq
Forward (+)
6107090 .. 6110918
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG077800.1

Sequence Viewer

Length: 1197 bp
ATGACTTTTAGTGTCACAAAATCAAAAACCCACGTACCAAAATCCATGGCTTCTTCTTCTTCAACACTCTTTGCAGCCATTGACATGGGCACAAACTCATTCAAGATGATCATAATCCGAGCCTACCCAGATGGCAAGTTCCTCACCATTGATCATCTCAGAGAGCCTGTGGTTCTTGGCCGTGACACATCATCATCCACAACCCCTTTTACACTCTCAGCTCAATCTCAGCTCATTGCTATTGAGGCCCTGAAGAAGTTTCAGAACACATTGATCTCCTACAAAATCAGCAAAGCTCAAATCCGCTGTGTTGCAACGGCAGCTGTGCGTGAGGCTGTGAATAAAGGTGAGTTCTTGAAATGTGTTAGTGAGAAGATAGGTTTTGAGGTTGATGTGTTGCCTGGTGAAGAAGAAGCTAGGCTTGTGTATCTGGGTATGCTTCAGTTTTGGCCTATATATGAGAAATTGGTTCTGGGTGTTGATATCGGAGGTGGGTCTACTGAGTTTGTGATTGGGAAGCAGGGGAAAGTTGTTTTTGGGGCTTCATTGAAGTTGGGGCATGTGAATTTGACCCAGAAATTTGGAAGCAATAAAGAAAAGGTTGCTCAGATTAGGGAGCATATTAGGTTGGTTGTTAAAGAATCTGGGTTGGTTAGGAAGATTAAAGATTGTGGCTTTGAAGTTGTTGTTGGGTCCTCTGGTACTATTAAGGCAGTTGAGAAGGCAGTGTTTGATGGGTATGTGAATAAGAGCAATGTGATTGAGGTTAGCAATGTGGCTTCTTTTGGGGATGGTAGGAAAGATTGGAGGTTGAGTAGAGGAGAAGTGAAGGGTGTTGTTGAGAGTTTGTGTGGTGGAGGAGAGGGAGAGAAGATTAGGAGAGAAAAGTTCTTCGAAAGGCGGTCTGAGTTTATTGTTGCTGGGGCTGTGTTGTTGGAGGAGATATTTGAGGTGCTTGGAATTGAGGAAATGGAGGTTTCTGGTTATGCATTGGCAGAAGGTGTAATTGCAGAAAGTTTGGCTAAGGTTAACGGTGGCTATGATCTGAATGCCAATGCAAGGTGGTCATCTATTGTTCGGCTTGCGATGAGGTATAATGGCAAGAAGAGGATGAAAGCTGCTTCTCAGTGTGCCATCATTGCAAAGGTTTTCAGTGAATTTCTTGACTTTCAACAGTCTTTGTGTAGATTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HD Ppx-GppA

Protein Analysis

398

Amino Acids

43.63

Weight (kDa)

9.17

Isoelectric Point (pI)

32.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ppx-GppA PF02541 44 - 341 2.3e-48 Ppx/GppA phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 497
AciI CCGC 2 cut(s) 304, 901
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 3 cut(s) 565, 578, 1157
AcuI CTGAAG 2 cut(s) 272, 425
AfaI GTAC 2 cut(s) 36, 703
AfiI CCNNNNNNNGG 1 cut(s) 1059
AgsI TTSAA 6 cut(s) 63, 103, 358, 550, 680, 1172
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 672, 704
AluBI AGCT 6 cut(s) 221, 232, 296, 323, 416, 1118
AluI AGCT 6 cut(s) 221, 232, 296, 323, 416, 1118
AoxI GGCC 3 cut(s) 178, 246, 449
ApeKI GCWGC 3 cut(s) 74, 320, 1118
ApoI RAATTY 3 cut(s) 565, 578, 1157
AspS9I GGNCC 2 cut(s) 247, 693
AsuHPI GGTGA 3 cut(s) 136, 359, 416
AsuII TTCGAA 1 cut(s) 894
AvaII GGWCC 1 cut(s) 693
BaeGI GKGCMC 1 cut(s) 92
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BbvI GCAGC 3 cut(s) 86, 332, 1105
BccI CCATC 4 cut(s) 125, 728, 785, 1142
BceAI ACGGC 2 cut(s) 165, 333
BciT130I CCWGG 1 cut(s) 402
BclI TGATCA 2 cut(s) 108, 151
BfaI CTAG 1 cut(s) 417
BisI GCNGC 3 cut(s) 75, 321, 1119
BlsI GCNGC 3 cut(s) 76, 322, 1120
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 2 cut(s) 247, 693
BmiI GGNNCC 1 cut(s) 694
BmrFI CCNGG 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 1023
Bpu14I TTCGAA 1 cut(s) 894
BsaAI YACGTR 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 45
BsaXI ACNNNNNCTCC 2 cut(s) 799, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 1059
Bse3DI GCAATG 4 cut(s) 234, 760, 778, 1137
Bse8I GATNNNNATC 1 cut(s) 113
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 3 cut(s) 194, 796, 1116
BseJI GATNNNNATC 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 1059
BseMI GCAATG 4 cut(s) 234, 760, 778, 1137
BseMII CTCAG 7 cut(s) 172, 231, 242, 492, 620, 897, 1139
BseRI GAGGAG 3 cut(s) 834, 873, 953
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 3 cut(s) 86, 332, 1105
BseYI CCCAGC 1 cut(s) 920
BshFI GGCC 3 cut(s) 180, 248, 451
BslI CCNNNNNNNGG 1 cut(s) 1059
BsmI GAATGC 1 cut(s) 1054
BsnI GGCC 3 cut(s) 180, 248, 451
Bsp119I TTCGAA 1 cut(s) 894
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 4 cut(s) 108, 151, 273, 1042
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 304, 901
BspANI GGCC 3 cut(s) 180, 248, 451
BspCNI CTCAG 7 cut(s) 171, 230, 241, 493, 619, 898, 1138
BspLI GGNNCC 1 cut(s) 694
BspT104I TTCGAA 1 cut(s) 894
BsrDI GCAATG 4 cut(s) 234, 760, 778, 1137
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 4 cut(s) 108, 151, 273, 1042
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 2 cut(s) 1034, 1176
Bst6I CTCTTC 1 cut(s) 1100
BstBAI YACGTR 1 cut(s) 34
BstBI TTCGAA 1 cut(s) 894
BstC8I GCNNGC 1 cut(s) 1083
BstDEI CTNAG 8 cut(s) 158, 217, 228, 501, 606, 906, 1023, 1125
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 3 cut(s) 194, 796, 1116
BstKTI GATC 4 cut(s) 111, 154, 276, 1045
BstMBI GATC 4 cut(s) 108, 151, 273, 1042
BstMWI GCNNNNNNNGC 3 cut(s) 245, 320, 1139
BstNI CCWGG 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 86, 332, 1105
BstXI CCANNNNNNTGG 2 cut(s) 85, 581
BsuRI GGCC 3 cut(s) 180, 248, 451
BtgI CCRYGG 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 1100
BtsCI GGATG 3 cut(s) 194, 796, 1116
BtsI GCAGTG 1 cut(s) 732
BtsIMutI CAGTG 3 cut(s) 732, 1133, 1159
Cac8I GCNNGC 1 cut(s) 1083
Cfr13I GGNCC 2 cut(s) 247, 693
Csp6I GTAC 2 cut(s) 35, 702
CviAII CATG 3 cut(s) 46, 85, 560
CviQI GTAC 2 cut(s) 35, 702
DdeI CTNAG 8 cut(s) 158, 217, 228, 501, 606, 906, 1023, 1125
DpnI GATC 4 cut(s) 110, 153, 275, 1044
DpnII GATC 4 cut(s) 108, 151, 273, 1042
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 1100
EarI CTCTTC 1 cut(s) 1100
Eco130I CCWWGG 1 cut(s) 45
Eco32I GATATC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 693
Eco57I CTGAAG 2 cut(s) 272, 425
EcoO109I RGGNCCY 2 cut(s) 247, 693
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 49, 88, 563
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FatI CATG 3 cut(s) 45, 84, 559
FbaI TGATCA 2 cut(s) 108, 151
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 3 cut(s) 75, 321, 1119
FokI GGATG 3 cut(s) 181, 803, 1123
Fsp4HI GCNGC 3 cut(s) 75, 321, 1119
FspBI CTAG 1 cut(s) 417
GluI GCNGC 3 cut(s) 75, 321, 1119
GsaI CCCAGC 1 cut(s) 924
HaeIII GGCC 3 cut(s) 180, 248, 451
Hin1II CATG 3 cut(s) 49, 88, 563
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HinfI GANTC 1 cut(s) 641
HpaI GTTAAC 1 cut(s) 1030
HphI GGTGA 3 cut(s) 136, 359, 416
Hpy166II GTNNAC 2 cut(s) 498, 1030
Hpy188I TCNGA 7 cut(s) 119, 161, 264, 488, 609, 907, 1047
Hpy188III TCNNGA 3 cut(s) 103, 355, 1163
Hpy8I GTNNAC 2 cut(s) 498, 1030
HpyAV CCTTC 3 cut(s) 715, 823, 992
HpyCH4III ACNGT 2 cut(s) 1034, 1176
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 74, 314, 989, 1010, 1058, 1142
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 320, 1139
HpyF3I CTNAG 8 cut(s) 158, 217, 228, 501, 606, 906, 1023, 1125
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 3 cut(s) 49, 88, 563
Ksp22I TGATCA 2 cut(s) 108, 151
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 4 cut(s) 108, 151, 273, 1042
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 86, 332, 1105
MaeI CTAG 1 cut(s) 417
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 13, 182
MalI GATC 4 cut(s) 110, 153, 275, 1044
MboI GATC 4 cut(s) 108, 151, 273, 1042
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 6 cut(s) 464, 565, 578, 960, 1005, 1157
MmeI TCCRAC 1 cut(s) 915
Mph1103I ATGCAT 1 cut(s) 991
MseI TTAA 4 cut(s) 636, 663, 708, 1029
MslI CAYNNNNRTG 1 cut(s) 83
MspA1I CMGCKG 2 cut(s) 306, 323
MspR9I CCNGG 1 cut(s) 402
Mva1269I GAATGC 1 cut(s) 1054
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 3 cut(s) 245, 320, 1139
NcoI CCATGG 1 cut(s) 45
NdeII GATC 4 cut(s) 108, 151, 273, 1042
NlaIII CATG 3 cut(s) 49, 88, 563
NlaIV GGNNCC 1 cut(s) 694
NmuCI GTSAC 2 cut(s) 13, 182
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 1 cut(s) 894
PctI GAATGC 1 cut(s) 1054
PfeI GAWTC 1 cut(s) 641
PkrI GCNGC 3 cut(s) 76, 322, 1120
Ppu21I YACGTR 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 694
PspPI GGNCC 2 cut(s) 247, 693
PspPPI RGGWCCY 1 cut(s) 693
PvuII CAGCTG 1 cut(s) 323
RsaI GTAC 2 cut(s) 36, 703
RsaNI GTAC 2 cut(s) 35, 702
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 4 cut(s) 636, 663, 708, 1029
SatI GCNGC 3 cut(s) 75, 321, 1119
Sau3AI GATC 4 cut(s) 108, 151, 273, 1042
Sau96I GGNCC 2 cut(s) 247, 693
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 1 cut(s) 92
SfuI TTCGAA 1 cut(s) 894
SinI GGWCC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 6 cut(s) 464, 565, 578, 960, 1005, 1157
SsiI CCGC 2 cut(s) 304, 901
SspMI CTAG 1 cut(s) 417
StyD4I CCNGG 1 cut(s) 400
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 1034, 1176
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 894
TasI AATT 6 cut(s) 464, 565, 578, 960, 1005, 1157
TfiI GAWTC 1 cut(s) 641
Tru1I TTAA 4 cut(s) 636, 663, 708, 1029
Tru9I TTAA 4 cut(s) 636, 663, 708, 1029
TscAI CASTG 3 cut(s) 732, 1133, 1159
TseFI GTSAC 2 cut(s) 13, 182
TseI GCWGC 3 cut(s) 74, 320, 1118
Tsp45I GTSAC 2 cut(s) 13, 182
TspDTI ATGAA 2 cut(s) 534, 1127
TspRI CASTG 3 cut(s) 732, 1133, 1159
VpaK11BI GGWCC 1 cut(s) 693
XapI RAATTY 3 cut(s) 565, 578, 1157
XceI RCATGY 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.