pycom04g17300

Ppx/GppA phosphatase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
19737141 .. 19739939
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17300.5

Sequence Viewer

Length: 1692 bp
ATGGCGTCTCCTACGCCGTACGCACCAACCCTTTCGACCCTCTTGGCAGCCATTGACATGGGGACCAACTCCTTCAAGCTGCTCATAGTCCGAGCATACCCAGACGGCAAATTCTTCACCGTCGATCAATTTAAAGAGCCGGTGGTTCTCGGCCGCGACACCACATCATCATCAAACCCAACCCCTTTTGTCCTCTCCCATCATTCCCACCTCCTTGCTTTCGAATCCCTAAAAAAGTTTCAGAAAATCCTGAAATCCTACAAAATCGAAAAAACCAACGTCCGTTGCGTCGCCACCTCCGCCGTGCGCGAAGCCGTGAACAAAGCCGAGTTCTTGGAACGCGTGAGGGAGGAGGTGGGTTTGGAGGTTGATGTGCTGCCGGGTGAGGAGGAAGCTCGGCTGGTTTATCTGGGTATGCTGCAGTTTCTACCGATATATGAGAAATCGGTGCTGGGTGTGGATATCGGAGGTGGGTCTACTGAGTTCGTGATTGGGAAGGAAGGAAATGTCGTTTTTGGGGCTTCGTTGAAGCTGGGGCATGTGAATTTGACCCAAAAGTTTGGGGCCAGTGAAGGGAATGCTGAAATTATGAGGCAGCATATCAGGTCGGTGATTCAGGAATTTGGGCTGGTTGAAAAGATTCAATCTTGCGGCTTTGATGTGGTTGTGGGATCTTCCGGTACGATCAAGGCCGTTGAAAAGGCGGTCCGTTTCGGGTATGCCAATATGAGCAATATGCTGCAGGTAGGCAATTTGGTTTCTTTTGGGGATGGAAAGAGGGACTGGAAGTTGAGTAGAGGAGAGGTGAAGGGTGTTGTGGGGAGTTTGTGCAGGGGAGGAGAGGCGGAGAGGATTAGGAGGGAGAAGTTCTTTGAAAGGCGGTCGGAGTTTATGGTTGCTGGGGCAGTGCTTTTGGAGGAGATATTTGAGATGATTGGAATCGAGGAGATGGAGGTTTCTGGGTATGCATTAGCAGAAGGTGTTATTGCAGAGAGTTTGGCTAAGGGTAATGAGGGTTATGATTTGAATGCCAATCGAAAATGGTCTTCGATTGCGAGGCTTGCTATGAGGTTTAATGGCAAGAAGAGGATGCAAACTGCTGCACAATGTGCTGGTATTGCTAAGGAAATTTTTGAAGGTTTGAGAAAATGTGACGACCTTACTAACAATCAAGTTGCTGCCTCCCTAGATGACAAGGATCTTGAATATCTTGAAGCTGCATGCTTGCTTCACAACATTGGGATTTCCGTCGGGAAAAAGGGTTACCATAAGCATTCTTATTCTATTATCATGAATGGCGATCATCTTCATGGTTATAGTACCGAAGAGGTCAAGCTGATAGCACTACTTGCAAAACACCACCGGAAGAAATTACCAAACGTTGATCATGTTTCCTTCAAGGAGTTGCCAGAGGAGGGAAAAAAGAAATTCAAATTTCTGTGTGCAATTATCCGTACTTCTGTTGCACTCCAACAACATCAACGCATAGATTTCCAGCAACTGGAATTTTCACATTTTCACGAAGGTTTTAGACTGACATGCAGTGGCGTAAAAGATCAAAATTCTCCACCTGACATAGTACGGAGTTTAGCTGAGGATATTGGAGATGAACTAAGGCAGGAGCTAGCACACTTTAAAATGGTTTTCCACAAAGAACTGTTCATTGTCGCTCCTTCAAGTGCTTCAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

564

Amino Acids

62.48

Weight (kDa)

7.29

Isoelectric Point (pI)

32.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 733
AccB7I CCANNNNNTGG 1 cut(s) 1501
AccI GTMKAC 1 cut(s) 476
AccII CGCG 3 cut(s) 156, 309, 342
AciI CCGC 6 cut(s) 154, 300, 651, 704, 845, 880
AclI AACGTT 1 cut(s) 1380
AclWI GGATC 2 cut(s) 679, 1206
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 8 cut(s) 110, 544, 620, 1128, 1427, 1433, 1505, 1561
AcuI CTGAAG 1 cut(s) 1668
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1109
AfaI GTAC 5 cut(s) 20, 682, 1321, 1456, 1581
AfiI CCNNNNNNNGG 3 cut(s) 573, 1415, 1501
AflIII ACRYGT 1 cut(s) 340
AluBI AGCT 7 cut(s) 79, 395, 532, 1217, 1336, 1592, 1624
AluI AGCT 7 cut(s) 79, 395, 532, 1217, 1336, 1592, 1624
Alw26I GTCTC 1 cut(s) 12
AlwI GGATC 2 cut(s) 679, 1206
AlwNI CAGNNNCTG 1 cut(s) 1501
AoxI GGCC 3 cut(s) 151, 564, 690
ApeKI GCWGC 9 cut(s) 47, 79, 376, 418, 595, 739, 1100, 1178, 1217
ApoI RAATTY 8 cut(s) 110, 544, 620, 1128, 1427, 1433, 1505, 1561
Asp700I GAANNNNTTC 1 cut(s) 639
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 3 cut(s) 63, 564, 706
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 4 cut(s) 109, 395, 622, 817
AsuII TTCGAA 1 cut(s) 222
AsuNHI GCTAGC 1 cut(s) 1624
AvaII GGWCC 2 cut(s) 63, 706
BbsI GAAGAC 1 cut(s) 1038
BbvCI CCTCAGC 1 cut(s) 1593
BbvI GCAGC 9 cut(s) 59, 66, 363, 405, 607, 726, 1087, 1165, 1204
BccI CCATC 3 cut(s) 207, 764, 943
BceAI ACGGC 4 cut(s) 121, 287, 299, 677
BclI TGATCA 1 cut(s) 1384
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 1187, 1625
BfmI CTRYAG 2 cut(s) 419, 740
BfuAI ACCTGC 1 cut(s) 733
Bme1390I CCNGG 1 cut(s) 381
Bme18I GGWCC 2 cut(s) 63, 706
BmgT120I GGNCC 3 cut(s) 63, 564, 706
BmiI GGNNCC 2 cut(s) 64, 565
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 1080
BmtI GCTAGC 1 cut(s) 1628
BpiI GAAGAC 1 cut(s) 1038
Bpu10I CCTNAGC 3 cut(s) 1002, 1122, 1593
Bpu14I TTCGAA 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 938
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 2 cut(s) 677, 1362
Bsc4I CCNNNNNNNGG 3 cut(s) 573, 1415, 1501
Bse118I RCCGGY 1 cut(s) 139
Bse1I ACTGG 3 cut(s) 567, 788, 1506
Bse8I GATNNNNATC 1 cut(s) 938
BseGI GGATG 2 cut(s) 775, 1095
BseJI GATNNNNATC 1 cut(s) 938
BseLI CCNNNNNNNGG 3 cut(s) 573, 1415, 1501
BseMII CTCAG 2 cut(s) 471, 1584
BseNI ACTGG 3 cut(s) 567, 788, 1506
BseRI GAGGAG 7 cut(s) 365, 401, 813, 852, 932, 959, 1427
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 9 cut(s) 59, 66, 363, 405, 607, 726, 1087, 1165, 1204
BseYI CCCAGC 3 cut(s) 451, 532, 899
BsgI GTGCAG 2 cut(s) 850, 1086
Bsh1236I CGCG 3 cut(s) 156, 309, 342
Bsh1285I CGRYCG 2 cut(s) 154, 884
BshFI GGCC 3 cut(s) 153, 566, 692
BsiEI CGRYCG 2 cut(s) 154, 884
BsiSI CCGG 4 cut(s) 140, 380, 678, 1363
BsiWI CGTACG 1 cut(s) 18
BslFI GGGAC 2 cut(s) 76, 794
BslI CCNNNNNNNGG 3 cut(s) 573, 1415, 1501
BsmAI GTCTC 1 cut(s) 12
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 76, 794
BsmI GAATGC 3 cut(s) 583, 1033, 1273
BsnI GGCC 3 cut(s) 153, 566, 692
Bsp119I TTCGAA 1 cut(s) 222
Bsp143I GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
BspACI CCGC 6 cut(s) 154, 300, 651, 704, 845, 880
BspANI GGCC 3 cut(s) 153, 566, 692
BspCNI CTCAG 2 cut(s) 472, 1585
BspFNI CGCG 3 cut(s) 156, 309, 342
BspHI TCATGA 1 cut(s) 1290
BspLI GGNNCC 2 cut(s) 64, 565
BspMAI CTGCAG 2 cut(s) 423, 744
BspMI ACCTGC 1 cut(s) 733
BspOI GCTAGC 1 cut(s) 1628
BspPI GGATC 2 cut(s) 679, 1206
BspT104I TTCGAA 1 cut(s) 222
BsrFI RCCGGY 1 cut(s) 139
BsrI ACTGG 3 cut(s) 567, 788, 1506
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 2 cut(s) 121, 1659
Bst6I CTCTTC 2 cut(s) 1079, 1320
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 1109, 1349
BstBI TTCGAA 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 1062, 1222, 1226, 1626
BstDEI CTNAG 5 cut(s) 480, 1002, 1122, 1593, 1613
BstEII GGTNACC 1 cut(s) 1262
BstF5I GGATG 2 cut(s) 775, 1095
BstFNI CGCG 3 cut(s) 156, 309, 342
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 7 cut(s) 127, 674, 687, 1201, 1303, 1387, 1558
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
BstMCI CGRYCG 2 cut(s) 154, 884
BstMWI GCNNNNNNNGC 5 cut(s) 299, 1061, 1109, 1118, 1349
BstNSI RCATGY 3 cut(s) 542, 1224, 1542
BstPI GGTNACC 1 cut(s) 1262
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 2 cut(s) 419, 740
BstUI CGCG 3 cut(s) 156, 309, 342
BstV1I GCAGC 9 cut(s) 59, 66, 363, 405, 607, 726, 1087, 1165, 1204
BstV2I GAAGAC 1 cut(s) 1038
BstX2I RGATCY 2 cut(s) 671, 1198
BstXI CCANNNNNNTGG 2 cut(s) 58, 560
BstYI RGATCY 2 cut(s) 671, 1198
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 3 cut(s) 153, 566, 692
BtsCI GGATG 2 cut(s) 775, 1095
BtsI GCAGTG 2 cut(s) 912, 1549
BtsIMutI CAGTG 3 cut(s) 574, 912, 1549
BveI ACCTGC 1 cut(s) 733
Cac8I GCNNGC 4 cut(s) 1062, 1222, 1226, 1626
CaiI CAGNNNCTG 1 cut(s) 1501
CciI TCATGA 1 cut(s) 1290
CfoI GCGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 139
Cfr13I GGNCC 3 cut(s) 63, 564, 706
CpoI CGGWCCG 1 cut(s) 706
CseI GACGC 1 cut(s) 277
Csp6I GTAC 5 cut(s) 19, 681, 1320, 1455, 1580
CspI CGGWCCG 1 cut(s) 706
CviAII CATG 7 cut(s) 58, 539, 1221, 1291, 1310, 1388, 1539
CviQI GTAC 5 cut(s) 19, 681, 1320, 1455, 1580
DdeI CTNAG 5 cut(s) 480, 1002, 1122, 1593, 1613
DpnI GATC 7 cut(s) 126, 673, 686, 1200, 1302, 1386, 1557
DpnII GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
DraI TTTAAA 2 cut(s) 133, 1636
DraIII CACNNNGTG 1 cut(s) 1109
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 1079, 1320
EarI CTCTTC 2 cut(s) 1079, 1320
EciI GGCGGA 2 cut(s) 289, 860
EclXI CGGCCG 1 cut(s) 151
Eco32I GATATC 1 cut(s) 463
Eco47I GGWCC 2 cut(s) 63, 706
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 1668
Eco91I GGTNACC 1 cut(s) 1262
EcoO65I GGTNACC 1 cut(s) 1262
EcoRV GATATC 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 970
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 7 cut(s) 61, 542, 1224, 1294, 1313, 1391, 1542
FaqI GGGAC 2 cut(s) 76, 794
FatI CATG 7 cut(s) 57, 538, 1220, 1290, 1309, 1387, 1538
FbaI TGATCA 1 cut(s) 1384
FblI GTMKAC 1 cut(s) 476
FokI GGATG 2 cut(s) 782, 1102
FspBI CTAG 2 cut(s) 1187, 1625
GlaI GCGC 1 cut(s) 308
GsaI CCCAGC 3 cut(s) 455, 536, 903
HaeIII GGCC 3 cut(s) 153, 566, 692
HapII CCGG 4 cut(s) 140, 380, 678, 1363
HgaI GACGC 1 cut(s) 277
HhaI GCGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 61, 542, 1224, 1294, 1313, 1391, 1542
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 4 cut(s) 224, 613, 640, 939
HpaII CCGG 4 cut(s) 140, 380, 678, 1363
HphI GGTGA 4 cut(s) 109, 395, 622, 817
Hpy166II GTNNAC 2 cut(s) 319, 477
Hpy188I TCNGA 4 cut(s) 92, 243, 467, 886
Hpy188III TCNNGA 9 cut(s) 250, 487, 617, 1202, 1211, 1252, 1291, 1520, 1686
Hpy8I GTNNAC 2 cut(s) 319, 477
Hpy99I CGWCG 3 cut(s) 125, 293, 1253
HpyCH4III ACNGT 2 cut(s) 121, 1659
HpyCH4IV ACGT 2 cut(s) 279, 1380
HpyF10VI GCNNNNNNNGC 5 cut(s) 299, 1061, 1109, 1118, 1349
HpyF3I CTNAG 5 cut(s) 480, 1002, 1122, 1593, 1613
HpySE526I ACGT 2 cut(s) 279, 1380
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 61, 542, 1224, 1294, 1313, 1391, 1542
HspAI GCGC 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 1384
Kzo9I GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
LmnI GCTCC 2 cut(s) 1621, 1675
Lsp1109I GCAGC 9 cut(s) 59, 66, 363, 405, 607, 726, 1087, 1165, 1204
LweI GCATC 1 cut(s) 1080
MaeI CTAG 2 cut(s) 1187, 1625
MaeII ACGT 2 cut(s) 279, 1380
MaeIII GTNAC 2 cut(s) 1151, 1262
MalI GATC 7 cut(s) 126, 673, 686, 1200, 1302, 1386, 1557
MboI GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
MboII GAAGA 7 cut(s) 106, 666, 1038, 1096, 1298, 1337, 1378
MflI RGATCY 2 cut(s) 671, 1198
MluI ACGCGT 1 cut(s) 340
MmeI TCCRAC 2 cut(s) 864, 1495
Mph1103I ATGCAT 1 cut(s) 970
MroXI GAANNNNTTC 1 cut(s) 639
MseI TTAA 3 cut(s) 132, 1074, 1635
MslI CAYNNNNRTG 2 cut(s) 56, 1308
MspI CCGG 4 cut(s) 140, 380, 678, 1363
MspR9I CCNGG 1 cut(s) 381
Mva1269I GAATGC 3 cut(s) 583, 1033, 1273
MvnI CGCG 3 cut(s) 156, 309, 342
MwoI GCNNNNNNNGC 5 cut(s) 299, 1061, 1109, 1118, 1349
NciI CCSGG 1 cut(s) 381
NdeII GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
NheI GCTAGC 1 cut(s) 1624
NlaIII CATG 7 cut(s) 61, 542, 1224, 1294, 1313, 1391, 1542
NlaIV GGNNCC 2 cut(s) 64, 565
NmeAIII GCCGAG 3 cut(s) 129, 352, 376
NmuCI GTSAC 1 cut(s) 1151
NsiI ATGCAT 1 cut(s) 970
NspI RCATGY 3 cut(s) 542, 1224, 1542
NspV TTCGAA 1 cut(s) 222
PaeI GCATGC 1 cut(s) 1224
PagI TCATGA 1 cut(s) 1290
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 3 cut(s) 583, 1033, 1273
PdmI GAANNNNTTC 1 cut(s) 639
PfeI GAWTC 4 cut(s) 224, 613, 640, 939
Pfl23II CGTACG 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 1501
Psp1406I AACGTT 1 cut(s) 1380
PspEI GGTNACC 1 cut(s) 1262
PspFI CCCAGC 3 cut(s) 451, 532, 899
PspLI CGTACG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 64, 565
PspPI GGNCC 3 cut(s) 63, 564, 706
PstI CTGCAG 2 cut(s) 423, 744
PstNI CAGNNNCTG 1 cut(s) 1501
PsuI RGATCY 2 cut(s) 671, 1198
RsaI GTAC 5 cut(s) 20, 682, 1321, 1456, 1581
RsaNI GTAC 5 cut(s) 19, 681, 1320, 1455, 1580
RseI CAYNNNNRTG 2 cut(s) 56, 1308
Rsr2I CGGWCCG 1 cut(s) 706
RsrII CGGWCCG 1 cut(s) 706
SaqAI TTAA 3 cut(s) 132, 1074, 1635
Sau3AI GATC 7 cut(s) 124, 671, 684, 1198, 1300, 1384, 1555
Sau96I GGNCC 3 cut(s) 63, 564, 706
ScrFI CCNGG 1 cut(s) 381
SfaNI GCATC 1 cut(s) 1080
SfcI CTRYAG 2 cut(s) 419, 740
SfuI TTCGAA 1 cut(s) 222
SinI GGWCC 2 cut(s) 63, 706
SmiMI CAYNNNNRTG 2 cut(s) 56, 1308
SphI GCATGC 1 cut(s) 1224
SsiI CCGC 6 cut(s) 154, 300, 651, 704, 845, 880
SspMI CTAG 2 cut(s) 1187, 1625
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 121, 1659
TaiI ACGT 2 cut(s) 282, 1383
TaqI TCGA 7 cut(s) 35, 123, 222, 267, 942, 1036, 1049
TauI GCSGC 2 cut(s) 156, 654
TfiI GAWTC 4 cut(s) 224, 613, 640, 939
Tru1I TTAA 3 cut(s) 132, 1074, 1635
Tru9I TTAA 3 cut(s) 132, 1074, 1635
TscAI CASTG 3 cut(s) 574, 912, 1549
TseFI GTSAC 1 cut(s) 1151
TseI GCWGC 9 cut(s) 47, 79, 376, 418, 595, 739, 1100, 1178, 1217
Tsp45I GTSAC 1 cut(s) 1151
TspDTI ATGAA 4 cut(s) 1298, 1307, 1623, 1651
TspGWI ACGGA 5 cut(s) 272, 698, 1237, 1442, 1597
TspRI CASTG 3 cut(s) 574, 912, 1549
Van91I CCANNNNNTGG 1 cut(s) 1501
VpaK11BI GGWCC 2 cut(s) 63, 706
XapI RAATTY 8 cut(s) 110, 544, 620, 1128, 1427, 1433, 1505, 1561
XceI RCATGY 3 cut(s) 542, 1224, 1542
XmiI GTMKAC 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 639
XspI CTAG 2 cut(s) 1187, 1625
Zsp2I ATGCAT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.