Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003859

Physical Location & Seq

Genomic Coordinates Reverse (-)

28130400 .. 28132246

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G315600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGCTTCAGTTTTTTCCAATATATGAGAAATTGGTGCTGGGTGTGGATATTGGAGGTGGGTCTACTGAGTTTGTAATTGGGAAGCAAGGACAAGTCATTTTTGGTGCTTCATTGAAGCTGGGACATGTGAATTTGACCCAAAAGTTTGGGAACAATGAAGAAAATGTTGCACATATGAGGGAGCACATTAGATTGGTTGTTCAAGAATCCGGGTTGGTTGAAAAGATTAAAGATTGTAGCTTTGAGGCTGTTGTCGGATCTTCGGGTACCATAAAGGCAGTAGAAAAAGCAGCCCTTTATGGGTATGCCAATGTGAGCAATATGCTCCAGGTCGGGAATATGGTTTCTTTTGGGGACAGTAAGAGGTATTGGAAGTTAAGTAGAGGAGAACTGAAGGGTGTTGTTGAGAGTTTATGTGGTGGAGGAGAGGCAGAGAAGATTAGGAGGGAGAAGTTCTTTAAAATGCGGTCCGAGTTTATCGTTGCCGGGGCTGTGCTATTGGAGGAGATATTTGAGGTAATTGGCATTGAGGAAATGGAGATTTCTGGGTATTCATTGGCAGAAGGTGTTATTGCAGAAACTTTAGCTAAGGTTAATGATTATGATTTGAATGCCAATGCAAAGTGGTCGTCTATTGTGCGGCTCGCAATGAGATTTAATAGCAACAAGAGGATGAGAGCGGCTGCTCAGTGTGCTAGCATTGCAAAGGAATTTTTTGAATGTTTAAGAAAATGTGACGAGCTTGCTAGCAATCAAGTTGCTGCCTCCCTAGATGACAAGGATCTTGAGTATCTTGAAGCATCATGTTTGCTTCACAATATTGGGCTTTCCATCGAGAAAAAGGGTTACCATAAGCATTCTTATTCTATTATCATGAATGGTGGCCATCTTCAAGGTTACAGTACTGAGGAGGTCAAGCTGATAGCACTACTTGCAAGACACCACAGGAAGAAATTACCAAACTTTGGTCATGTTTCCTTTAAGGAGTTTCCAACAGAGGTCAAAAAGAAATTCAGATTTCTATGTGCAATTATCCGTATTTCAGTTGCACTACAACAACATCGACGCATTGATTTCCAACAAATAGAATTTTCACATTCTTACGAAGGTTTTAAACTGGTATTCTCCAATCTAGTTTTCAATCAAACTTTCCCTCCTAAAGTAGGGTTCTTTTTCTTAGCATTTGTAGATTTTTTTTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HD Ppx-GppA

Protein Analysis

402

Amino Acids

45.18

Weight (kDa)

8.51

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195 AT1G09195
fragaria_vesca	FvH4_6g07160 FvH4_6g07160
malus_domestica	MD12G1208200.v1.1
prunus_persica	Prupe.6G315600_v2.0.a1
pyrus_communis	pycom04g17300 pycom12g19560
rosa_chinensis	RchiOBHm_Chr3g0456781
rosa_laevigata	RLG00000000542 RLG00000025278
rosa_multiflora	Rmu_co8143530.1_g000001 Rmu_sc0000133.1_g000024
rosa_roxburghii	Rroxscaffold_6G00422490
rosa_rugosa	Rorug03G0015700 Rorug03G0015700
rosa_samantha	Rh3AG076100 Rh3BG078000 Rh3CG077800 Rh3DG079800
rosa_wichuraiana	Rw3G006530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1204
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	266
AccB7I	CCANNNNNTGG	1 cut(s)	965
AccBSI	CCGCTC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	62
AciI	CCGC	3 cut(s)	466, 640, 680
AclWI	GGATC	2 cut(s)	265, 789
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	4 cut(s)	130, 710, 1010, 1088
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	2 cut(s)	268, 904
AfiI	CCNNNNNNNGG	3 cut(s)	300, 965, 1163
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	8 cut(s)	115, 203, 221, 610, 719, 797, 893, 1141
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	1121, 1153
AluBI	AGCT	5 cut(s)	118, 240, 587, 742, 919
AluI	AGCT	5 cut(s)	118, 240, 587, 742, 919
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	2 cut(s)	265, 789
AoxI	GGCC	1 cut(s)	883
ApeKI	GCWGC	3 cut(s)	290, 683, 761
ApoI	RAATTY	4 cut(s)	130, 710, 1010, 1088
ArsI	GACNNNNNNTTYG	2 cut(s)	614, 646
Asp718I	GGTACC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	2 cut(s)	211, 487
AsuNHI	GCTAGC	2 cut(s)	695, 746
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	266
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	302, 670, 748
BccI	CCATC	2 cut(s)	839, 894
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	2 cut(s)	211, 487
BfaI	CTAG	4 cut(s)	696, 747, 770, 1133
BisI	GCNGC	5 cut(s)	291, 641, 681, 684, 762
BlsI	GCNGC	5 cut(s)	292, 642, 682, 685, 763
BmcAI	AGTACT	1 cut(s)	904
Bme1390I	CCNGG	3 cut(s)	211, 329, 487
Bme18I	GGWCC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	3 cut(s)	211, 329, 487
BmsI	GCATC	1 cut(s)	809
BmtI	GCTAGC	2 cut(s)	699, 750
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	2 cut(s)	211, 487
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	1138, 1168
Bsc4I	CCNNNNNNNGG	3 cut(s)	300, 965, 1163
Bse1I	ACTGG	1 cut(s)	1122
Bse3DI	GCAATG	2 cut(s)	654, 699
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	1 cut(s)	678
BseLI	CCNNNNNNNGG	3 cut(s)	300, 965, 1163
BseMI	GCAATG	2 cut(s)	654, 699
BseMII	CTCAG	3 cut(s)	57, 701, 897
BseNI	ACTGG	1 cut(s)	1122
BseRI	GAGGAG	4 cut(s)	399, 438, 518, 923
BseXI	GCAGC	3 cut(s)	302, 670, 748
BseYI	CCCAGC	2 cut(s)	37, 118
BshFI	GGCC	1 cut(s)	885
BshNI	GGYRCC	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	210, 486
BslFI	GGGAC	2 cut(s)	135, 368
BslI	CCNNNNNNNGG	3 cut(s)	300, 965, 1163
BsmFI	GGGAC	2 cut(s)	135, 368
BsmI	GAATGC	2 cut(s)	616, 856
BsnI	GGCC	1 cut(s)	885
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	257, 781
BspACI	CCGC	3 cut(s)	466, 640, 680
BspANI	GGCC	1 cut(s)	885
BspCNI	CTCAG	3 cut(s)	58, 700, 898
BspHI	TCATGA	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	268
BspOI	GCTAGC	2 cut(s)	699, 750
BspPI	GGATC	2 cut(s)	265, 789
BspT107I	GGYRCC	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	654, 699
BsrI	ACTGG	1 cut(s)	1122
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	257, 781
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	359, 902
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	4 cut(s)	645, 697, 744, 748
BstDEI	CTNAG	5 cut(s)	66, 588, 687, 906, 1177
BstEII	GGTNACC	1 cut(s)	845
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	1 cut(s)	678
BstKTI	GATC	2 cut(s)	260, 784
BstMBI	GATC	2 cut(s)	257, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 701, 932
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	128
BstPI	GGTNACC	1 cut(s)	845
BstSCI	CCNGG	3 cut(s)	209, 327, 485
BstV1I	GCAGC	3 cut(s)	302, 670, 748
BstX2I	RGATCY	2 cut(s)	257, 781
BstXI	CCANNNNNNTGG	1 cut(s)	146
BstYI	RGATCY	2 cut(s)	257, 781
BsuRI	GGCC	1 cut(s)	885
BtsCI	GGATG	1 cut(s)	678
BtsIMutI	CAGTG	1 cut(s)	695
Cac8I	GCNNGC	4 cut(s)	645, 697, 744, 748
CciI	TCATGA	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	468
CpoI	CGGWCCG	1 cut(s)	468
CseI	GACGC	1 cut(s)	1074
Csp6I	GTAC	2 cut(s)	267, 903
CspI	CGGWCCG	1 cut(s)	468
CviAII	CATG	4 cut(s)	125, 804, 874, 971
CviQI	GTAC	2 cut(s)	267, 903
DdeI	CTNAG	5 cut(s)	66, 588, 687, 906, 1177
DpnI	GATC	2 cut(s)	259, 783
DpnII	GATC	2 cut(s)	257, 781
DraI	TTTAAA	2 cut(s)	460, 1114
EaeI	YGGCCR	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoO65I	GGTNACC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	327
FaeI	CATG	4 cut(s)	128, 807, 877, 974
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FaqI	GGGAC	2 cut(s)	135, 368
FatI	CATG	4 cut(s)	124, 803, 873, 970
FauNDI	CATATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	5 cut(s)	291, 641, 681, 684, 762
FokI	GGATG	1 cut(s)	685
Fsp4HI	GCNGC	5 cut(s)	291, 641, 681, 684, 762
FspBI	CTAG	4 cut(s)	696, 747, 770, 1133
GluI	GCNGC	5 cut(s)	291, 641, 681, 684, 762
GsaI	CCCAGC	2 cut(s)	41, 122
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	885
HapII	CCGG	2 cut(s)	210, 486
HgaI	GACGC	1 cut(s)	1074
Hin1II	CATG	4 cut(s)	128, 807, 877, 974
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	2 cut(s)	210, 486
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	257, 472, 1016
Hpy188III	TCNNGA	6 cut(s)	203, 334, 785, 794, 835, 874
Hpy8I	GTNNAC	1 cut(s)	63
Hpy99I	CGWCG	1 cut(s)	1068
HpyAV	CCTTC	3 cut(s)	388, 557, 1100
HpyCH4III	ACNGT	2 cut(s)	359, 902
HpyCH4V	TGCA	7 cut(s)	170, 575, 620, 704, 935, 1028, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 701, 932
HpyF3I	CTNAG	5 cut(s)	66, 588, 687, 906, 1177
Hsp92II	CATG	4 cut(s)	128, 807, 877, 974
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	257, 781
LmnI	GCTCC	2 cut(s)	181, 330
LpnPI	CCDG	9 cut(s)	23, 104, 223, 314, 341, 499, 531, 931, 1103
Lsp1109I	GCAGC	3 cut(s)	302, 670, 748
LweI	GCATC	1 cut(s)	809
MaeI	CTAG	4 cut(s)	696, 747, 770, 1133
MaeIII	GTNAC	3 cut(s)	734, 845, 896
MalI	GATC	2 cut(s)	259, 783
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	2 cut(s)	257, 781
MboII	GAAGA	5 cut(s)	170, 252, 448, 881, 961
MflI	RGATCY	2 cut(s)	257, 781
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	885
MluCI	AATT	9 cut(s)	29, 75, 130, 519, 710, 953, 1010, 1029, 1088
MluNI	TGGCCA	1 cut(s)	885
MmeI	TCCRAC	3 cut(s)	235, 1016, 1102
Mox20I	TGGCCA	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	8 cut(s)	228, 377, 459, 594, 657, 725, 981, 1113
Msp20I	TGGCCA	1 cut(s)	885
MspI	CCGG	2 cut(s)	210, 486
MspR9I	CCNGG	3 cut(s)	211, 329, 487
Mva1269I	GAATGC	2 cut(s)	616, 856
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	692, 701, 932
NciI	CCSGG	2 cut(s)	211, 487
NdeI	CATATG	1 cut(s)	174
NdeII	GATC	2 cut(s)	257, 781
NheI	GCTAGC	2 cut(s)	695, 746
NlaIII	CATG	4 cut(s)	128, 807, 877, 974
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	734
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	873
PciI	ACATGT	1 cut(s)	124
PctI	GAATGC	2 cut(s)	616, 856
PfeI	GAWTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	965
PkrI	GCNGC	5 cut(s)	292, 642, 682, 685, 763
PscI	ACATGT	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	1204
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	845
PspFI	CCCAGC	2 cut(s)	37, 118
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	257, 781
RsaI	GTAC	2 cut(s)	268, 904
RsaNI	GTAC	2 cut(s)	267, 903
Rsr2I	CGGWCCG	1 cut(s)	468
RsrII	CGGWCCG	1 cut(s)	468
SaqAI	TTAA	8 cut(s)	228, 377, 459, 594, 657, 725, 981, 1113
SatI	GCNGC	5 cut(s)	291, 641, 681, 684, 762
Sau3AI	GATC	2 cut(s)	257, 781
Sau96I	GGNCC	1 cut(s)	468
ScaI	AGTACT	1 cut(s)	904
ScrFI	CCNGG	3 cut(s)	211, 329, 487
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	1 cut(s)	809
SinI	GGWCC	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	9 cut(s)	29, 75, 130, 519, 710, 953, 1010, 1029, 1088
SsiI	CCGC	3 cut(s)	466, 640, 680
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	4 cut(s)	696, 747, 770, 1133
StyD4I	CCNGG	3 cut(s)	209, 327, 485
TaaI	ACNGT	2 cut(s)	359, 902
TaqI	TCGA	2 cut(s)	834, 1063
TasI	AATT	9 cut(s)	29, 75, 130, 519, 710, 953, 1010, 1029, 1088
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	2 cut(s)	643, 683
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	8 cut(s)	228, 377, 459, 594, 657, 725, 981, 1113
Tru9I	TTAA	8 cut(s)	228, 377, 459, 594, 657, 725, 981, 1113
TscAI	CASTG	1 cut(s)	695
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	3 cut(s)	290, 683, 761
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	4 cut(s)	99, 171, 543, 890
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	1 cut(s)	695
Van91I	CCANNNNNTGG	1 cut(s)	965
VpaK11BI	GGWCC	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	4 cut(s)	130, 710, 1010, 1088
XceI	RCATGY	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	4 cut(s)	696, 747, 770, 1133
ZrmI	AGTACT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.