AT1G09210

unfolded protein binding

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
2972638 .. 2977002
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09210.1

Sequence Viewer

Length: 1275 bp
ATGGCGAAAATGATTCCTAGCCTCGTCTCTCTAATTCTTATCGGTCTTGTTGCGATCGCCTCCGCCGCAGTTATTTTCGAGGAGCGCTTTGATGATGGCTGGGAGAACAGATGGGTTAAATCTGAGTGGAAGAAGGATGATAACACTGCTGGGGAGTGGAAGCACACTGCGGGAAATTGGTCTGGTGACGCTAACGATAAAGGTATCCAGACCAGTGAAGACTACAGATTCTACGCCATTTCAGCTGAGTTCCCTGAATTCAGTAACAAGGACAAGACCTTAGTCTTCCAATTCTCAGTCAAGCACGAGCAAAAGCTTGACTGCGGTGGTGGCTACATGAAGCTACTAAGTGGTGATGTTGACCAAAAGAAATTTGGTGGAGACACACCATACAGTATCATGTTTGGTCCTGATATCTGTGGCTACAGCACAAAGAAAGTGCATGCTATCCTTACCTATAATGAAGCCAACCACCTGATCAAGAAAGATGTTCCATGTGAAACTGACCAGCTCACCCATGTGTACACATTTATCCTCCGCCCAGATGCTACTTACAGCATTCTCATCGACAATGTTGAGAAACAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCACCCAAGAAGATCAAGGACCCCAGCGCCAAGAAGCCTGAGGACTGGGACGAACAAGAATACATTTCTGACCCTGAAGACAAGAAACCTGACGGTTACGATGATATCCCTAAGGAGATCCCAGACACCGACTCAAAGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCAACAATCCCCAACCCTGAGTACATGGGTGAATGGAAGCCTAAGCAAATCAAGAACCCCAACTACAAGGGCAAGTGGGAGGCTCCATTGATTGACAACCCTGACTTCAAGGATGACCCAGAGCTCTACGTCTTCCCCAAGCTGAAATATGTTGGACTCGAATTGTGGCAGGTGAAATCAGGATCATTGTTCGACAATGTCTTGATCTGCGATGACCCAGACTATGCCAAGAAGTTGGCAGATGAAACATGGGGAAAGCTCAAGGATGCGGAGAAAGCAGCTTTCGATGAGGCTGAGAAGAAGAATGAGGAAGAGGAATCCAAGGACGCACCTGCGGAATCTGATGCTGAAGACGAACCAGAGGATGATGAAGGAGGAGATGATTCCGATTCTGAATCTAAGGCCGAGGAGACCAAATCAGTAGATAGCGAGGAAACCTCTGAGAAAGACGCCACCGCTCATGATGAGCTATAG

Protein Analysis

424

Amino Acids

48.16

Weight (kDa)

4.37

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Calreticulin PF00262 26 - 261 8.7e-58 Calreticulin family
Calreticulin PF00262 263 - 336 1.4e-20 Calreticulin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 961, 1141
Acc36I ACCTGC 2 cut(s) 961, 1141
AccBSI CCGCTC 1 cut(s) 1259
AciI CCGC 8 cut(s) 63, 66, 170, 324, 538, 1070, 1136, 1257
AclWI GGATC 3 cut(s) 618, 730, 991
AcsI RAATTY 2 cut(s) 257, 371
AcuI CTGAAG 2 cut(s) 714, 1170
AcyI GRCGYC 1 cut(s) 1251
AfaI GTAC 2 cut(s) 524, 824
AfeI AGCGCT 1 cut(s) 86
AgsI TTSAA 1 cut(s) 910
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 9 cut(s) 245, 316, 343, 511, 925, 943, 1060, 1082, 1270
AluI AGCT 9 cut(s) 245, 316, 343, 511, 925, 943, 1060, 1082, 1270
Alw21I GWGCWC 1 cut(s) 927
Alw26I GTCTC 3 cut(s) 31, 375, 1205
AlwI GGATC 3 cut(s) 618, 730, 991
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 1203
ApeKI GCWGC 1 cut(s) 1079
ApoI RAATTY 2 cut(s) 257, 371
AsiSI GCGATCGC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 87, 647
AspS9I GGNCC 2 cut(s) 407, 637
AsuHPI GGTGA 6 cut(s) 197, 365, 505, 800, 842, 985
AvaII GGWCC 2 cut(s) 407, 637
AxyI CCTNAGG 3 cut(s) 657, 729, 762
BanII GRGCYC 1 cut(s) 927
BauI CACGAG 1 cut(s) 305
BbsI GAAGAC 5 cut(s) 225, 277, 702, 925, 1158
Bbv12I GWGCWC 1 cut(s) 927
BbvI GCAGC 1 cut(s) 1091
BccI CCATC 3 cut(s) 89, 105, 779
BcgI CGANNNNNNTGC 2 cut(s) 547, 581
BciVI GTATCC 1 cut(s) 215
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 3 cut(s) 31, 375, 1205
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 3 cut(s) 223, 424, 1271
BfoI RGCGCY 2 cut(s) 88, 648
BfuAI ACCTGC 2 cut(s) 961, 1141
BfuI GTATCC 1 cut(s) 215
BisI GCNGC 2 cut(s) 66, 1080
BlsI GCNGC 2 cut(s) 67, 1081
Bme18I GGWCC 2 cut(s) 407, 637
BmgT120I GGNCC 2 cut(s) 407, 637
BmiI GGNNCC 2 cut(s) 639, 885
BmrI ACTGGG 3 cut(s) 616, 673, 778
BmsI GCATC 3 cut(s) 535, 1057, 1135
BmuI ACTGGG 3 cut(s) 616, 673, 778
BoxI GACNNNNGTC 1 cut(s) 281
BpiI GAAGAC 5 cut(s) 225, 277, 702, 925, 1158
BplI GAGNNNNNCTC 2 cut(s) 1223, 1255
Bpu10I CCTNAGC 1 cut(s) 843
BpuEI CTTGAG 1 cut(s) 1046
BsaHI GRCGYC 1 cut(s) 1251
BsaI GGTCTC 1 cut(s) 1205
BsaJI CCNNGG 2 cut(s) 1122, 1206
Bse1I ACTGG 5 cut(s) 213, 592, 611, 668, 773
Bse21I CCTNAGG 3 cut(s) 657, 729, 762
BseDI CCNNGG 2 cut(s) 1122, 1206
BseGI GGATG 5 cut(s) 142, 778, 919, 1072, 1171
BseMII CTCAG 8 cut(s) 114, 237, 309, 648, 753, 810, 1086, 1233
BseNI ACTGG 5 cut(s) 213, 592, 611, 668, 773
BseRI GAGGAG 3 cut(s) 95, 1191, 1223
BseXI GCAGC 1 cut(s) 1091
BseYI CCCAGC 3 cut(s) 99, 149, 641
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 1 cut(s) 1205
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 927
BslFI GGGAC 1 cut(s) 680
BsmAI GTCTC 3 cut(s) 31, 375, 1205
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 1 cut(s) 558
BsnI GGCC 1 cut(s) 1205
Bso31I GGTCTC 1 cut(s) 1205
Bsp1286I GDGCHC 1 cut(s) 927
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
BspACI CCGC 8 cut(s) 63, 66, 170, 324, 538, 1070, 1136, 1257
BspANI GGCC 1 cut(s) 1205
BspCNI CTCAG 8 cut(s) 115, 238, 308, 649, 754, 811, 1087, 1234
BspHI TCATGA 1 cut(s) 1261
BspLI GGNNCC 2 cut(s) 639, 885
BspMI ACCTGC 2 cut(s) 961, 1141
BspPI GGATC 3 cut(s) 618, 730, 991
BspTNI GGTCTC 1 cut(s) 1205
BsrBI CCGCTC 1 cut(s) 1259
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 5 cut(s) 213, 592, 611, 668, 773
BssECI CCNNGG 2 cut(s) 1122, 1206
BssMI GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
BssNI GRCGYC 1 cut(s) 1251
BssSI CACGAG 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 1122
Bst2BI CACGAG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 395, 713
Bst6I CTCTTC 1 cut(s) 1107
BstACI GRCGYC 1 cut(s) 1251
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 444
BstF5I GGATG 5 cut(s) 142, 778, 919, 1072, 1171
BstH2I RGCGCY 2 cut(s) 88, 648
BstHHI GCGC 2 cut(s) 87, 647
BstKTI GATC 7 cut(s) 57, 480, 613, 633, 738, 986, 1008
BstMAI GTCTC 3 cut(s) 31, 375, 1205
BstMBI GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 65, 242, 330, 1076
BstNSI RCATGY 1 cut(s) 446
BstPAI GACNNNNGTC 1 cut(s) 281
BstSFI CTRYAG 3 cut(s) 223, 424, 1271
BstV1I GCAGC 1 cut(s) 1091
BstV2I GAAGAC 5 cut(s) 225, 277, 702, 925, 1158
BstX2I RGATCY 2 cut(s) 610, 735
BstXI CCANNNNNNTGG 1 cut(s) 1036
BstYI RGATCY 2 cut(s) 610, 735
Bsu36I CCTNAGG 3 cut(s) 657, 729, 762
BsuI GTATCC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 1205
BtgZI GCGATG 1 cut(s) 1026
BtsCI GGATG 5 cut(s) 142, 778, 919, 1072, 1171
BtsI GCAGTG 2 cut(s) 144, 165
BtsIMutI CAGTG 3 cut(s) 144, 165, 220
BveI ACCTGC 2 cut(s) 961, 1141
Cac8I GCNNGC 1 cut(s) 444
CciI TCATGA 1 cut(s) 1261
CfoI GCGC 2 cut(s) 87, 647
Cfr13I GGNCC 2 cut(s) 407, 637
CseI GACGC 3 cut(s) 197, 1136, 1259
Csp6I GTAC 2 cut(s) 523, 823
CviAII CATG 8 cut(s) 337, 400, 443, 495, 518, 826, 1050, 1262
CviQI GTAC 2 cut(s) 523, 823
DpnI GATC 7 cut(s) 56, 479, 612, 632, 737, 985, 1007
DpnII GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
EciI GGCGGA 2 cut(s) 52, 527
Ecl136II GAGCTC 1 cut(s) 925
Eco130I CCWWGG 1 cut(s) 1122
Eco24I GRGCYC 1 cut(s) 927
Eco31I GGTCTC 1 cut(s) 1205
Eco32I GATATC 2 cut(s) 415, 724
Eco47I GGWCC 2 cut(s) 407, 637
Eco47III AGCGCT 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 2 cut(s) 714, 1170
Eco81I CCTNAGG 3 cut(s) 657, 729, 762
EcoICRI GAGCTC 1 cut(s) 925
EcoO109I RGGNCCY 1 cut(s) 637
EcoRI GAATTC 1 cut(s) 257
EcoRV GATATC 2 cut(s) 415, 724
EcoT14I CCWWGG 1 cut(s) 1122
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 1122
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 8 cut(s) 340, 403, 446, 498, 521, 829, 1053, 1265
FaqI GGGAC 1 cut(s) 680
FatI CATG 8 cut(s) 336, 399, 442, 494, 517, 825, 1049, 1261
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 66, 1080
FokI GGATG 5 cut(s) 149, 785, 926, 1079, 1178
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 2 cut(s) 66, 1080
FspBI CTAG 1 cut(s) 18
GlaI GCGC 2 cut(s) 86, 646
GluI GCNGC 2 cut(s) 66, 1080
GsaI CCCAGC 3 cut(s) 103, 153, 645
HaeII RGCGCY 2 cut(s) 88, 648
HaeIII GGCC 1 cut(s) 1205
HgaI GACGC 3 cut(s) 197, 1136, 1259
HhaI GCGC 2 cut(s) 87, 647
Hin1I GRCGYC 1 cut(s) 1251
Hin1II CATG 8 cut(s) 340, 403, 446, 498, 521, 829, 1053, 1265
Hin6I GCGC 2 cut(s) 85, 645
HinP1I GCGC 2 cut(s) 85, 645
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 9 cut(s) 13, 228, 749, 957, 1118, 1139, 1184, 1190, 1196
HphI GGTGA 6 cut(s) 197, 365, 505, 800, 842, 985
Hpy166II GTNNAC 4 cut(s) 361, 523, 525, 795
Hpy188I TCNGA 7 cut(s) 124, 604, 688, 1144, 1189, 1195, 1243
Hpy188III TCNNGA 7 cut(s) 208, 410, 481, 853, 981, 1003, 1262
Hpy8I GTNNAC 4 cut(s) 361, 523, 525, 795
HpyAV CCTTC 2 cut(s) 127, 1166
HpyCH4III ACNGT 2 cut(s) 395, 713
HpyCH4IV ACGT 1 cut(s) 930
HpyCH4V TGCA 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 242, 330, 1076
HpySE526I ACGT 1 cut(s) 930
Hsp92I GRCGYC 1 cut(s) 1251
Hsp92II CATG 8 cut(s) 340, 403, 446, 498, 521, 829, 1053, 1265
HspAI GCGC 2 cut(s) 85, 645
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
LmnI GCTCC 2 cut(s) 82, 889
Lsp1109I GCAGC 1 cut(s) 1091
LweI GCATC 3 cut(s) 535, 1057, 1135
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 930
MaeIII GTNAC 3 cut(s) 185, 263, 713
MalI GATC 7 cut(s) 56, 479, 612, 632, 737, 985, 1007
MbiI CCGCTC 1 cut(s) 1259
MboI GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
MflI RGATCY 2 cut(s) 610, 735
MhlI GDGCHC 1 cut(s) 927
MluCI AATT 6 cut(s) 33, 175, 257, 290, 371, 962
MlyI GAGTC 2 cut(s) 743, 951
MmeI TCCRAC 1 cut(s) 934
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 518
MspA1I CMGCKG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 558
MwoI GCNNNNNNNGC 4 cut(s) 65, 242, 330, 1076
NdeII GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
NlaIII CATG 8 cut(s) 340, 403, 446, 498, 521, 829, 1053, 1265
NlaIV GGNNCC 2 cut(s) 639, 885
NmeAIII GCCGAG 1 cut(s) 1231
NmuCI GTSAC 1 cut(s) 185
NspI RCATGY 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 518
PaeI GCATGC 1 cut(s) 446
PagI TCATGA 1 cut(s) 1261
PaqCI CACCTGC 2 cut(s) 961, 1141
PctI GAATGC 1 cut(s) 558
PfeI GAWTC 7 cut(s) 13, 228, 1118, 1139, 1184, 1190, 1196
PflFI GACNNNGTC 1 cut(s) 998
PkrI GCNGC 2 cut(s) 67, 1081
Ple19I CGATCG 1 cut(s) 57
PleI GAGTC 2 cut(s) 743, 951
PpsI GAGTC 2 cut(s) 743, 951
PpuMI RGGWCCY 1 cut(s) 637
PshAI GACNNNNGTC 1 cut(s) 281
Psp124BI GAGCTC 1 cut(s) 927
Psp5II RGGWCCY 1 cut(s) 637
PspFI CCCAGC 3 cut(s) 99, 149, 641
PspN4I GGNNCC 2 cut(s) 639, 885
PspPI GGNCC 2 cut(s) 407, 637
PspPPI RGGWCCY 1 cut(s) 637
PsrI GAACNNNNNNTAC 2 cut(s) 848, 880
PsuI RGATCY 2 cut(s) 610, 735
PsyI GACNNNGTC 1 cut(s) 998
PvuI CGATCG 1 cut(s) 57
PvuII CAGCTG 1 cut(s) 245
RgaI GCGATCGC 1 cut(s) 57
RsaI GTAC 2 cut(s) 524, 824
RsaNI GTAC 2 cut(s) 523, 823
RseI CAYNNNNRTG 1 cut(s) 518
SacI GAGCTC 1 cut(s) 927
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 66, 1080
Sau3AI GATC 7 cut(s) 54, 477, 610, 630, 735, 983, 1005
Sau96I GGNCC 2 cut(s) 407, 637
SchI GAGTC 2 cut(s) 743, 951
SduI GDGCHC 1 cut(s) 927
SfaAI GCGATCGC 1 cut(s) 57
SfaNI GCATC 3 cut(s) 535, 1057, 1135
SfcI CTRYAG 3 cut(s) 223, 424, 1271
SgfI GCGATCGC 1 cut(s) 57
SinI GGWCC 2 cut(s) 407, 637
SmiMI CAYNNNNRTG 1 cut(s) 518
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
SphI GCATGC 1 cut(s) 446
Sse9I AATT 6 cut(s) 33, 175, 257, 290, 371, 962
SsiI CCGC 8 cut(s) 63, 66, 170, 324, 538, 1070, 1136, 1257
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 927
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 2 cut(s) 395, 713
TaiI ACGT 1 cut(s) 933
TaqI TCGA 5 cut(s) 78, 567, 960, 993, 1086
TaqII GACCGA 1 cut(s) 32
TasI AATT 6 cut(s) 33, 175, 257, 290, 371, 962
TatI WGTACW 2 cut(s) 522, 822
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 7 cut(s) 13, 228, 1118, 1139, 1184, 1190, 1196
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 3 cut(s) 151, 172, 220
TseFI GTSAC 1 cut(s) 185
TseI GCWGC 1 cut(s) 1079
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 5 cut(s) 353, 477, 792, 1059, 1185
TspRI CASTG 3 cut(s) 151, 172, 220
Tth111I GACNNNGTC 1 cut(s) 998
VpaK11BI GGWCC 2 cut(s) 407, 637
XapI RAATTY 2 cut(s) 257, 371
XceI RCATGY 1 cut(s) 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.