Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Reverse (-)

4419396 .. 4422729

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCGTCTAGGGCTCGAAACTCTAGCTTGGCGTCCTTGATCGTTCTCTCTCTCCTCGCCGTCGCCTCCGCCAAGGTCTTCTTCGAGGAGAAATTCGAAGATGGATGGGAGAAACGTTGGATTAAATCTGACTGGAAGAAGGATGAGAACCTAGCTGGTGAATGGAACTACACCTCCGGTAAATGGAACGGCGATGCTAATGACAAAGGTATCCAAACCAGTGAGGACTACCGTTTCTATGCCATATCAGCTGAGTTCCCTGAATTCAGCAACAAGGATAACACACTAGTGTTCCAGTTTTCTGTGAAGCATGAACAGAAACTTGACTGCGGTGGTGGCTACATCAAATTGCTCAGTGGTGATGTAGATCAGAAGTCCTTTGGTGGTGATACCCCATACAGCATCATGTTTGGGCCAGATATCTGTGGATACAGCACCAAGAAAGTGCATGCAATTCTCCACTACAACGGAACAAACAACTTGATCAAGAAGGACGTACCTTGTGAGACTGACCAGCTCACTCATGTATACACCTTTATCATCCGCCCAGATGCTACCTACAGCATCCTTATTGACAATGTAGAGAAGCAAACTGGCAGCCTCTACAGTGATTGGGATCTTCTTCCTCCAAAGAAAATCAAGGATCCCGAAGCCAAGAAGCCTGAAGACTGGGACGACAAGGAATTCATCCCAGACCCTGAAGACAAGAAGCCAGAGGGATATGATGACATTCCCAAGGAAATCTCTGACCCAGAAGCCAAAAAGCCCGAAGATTGGGATGATGAGGAAGATGGTGAATGGACAGCCCCAACCATCCCCAACCCTGAATACAAGGGTGAATGGAAGCCAAAGAAAATTAAGAACCCCAACTACAAGGGAAAGTGGAAGGCACCAATGATTGACAACCCAAACTTCTCCGATGACCCTGATCTATATGTTTTCCCCAACTTGAAATACGTCGGTATTGAATTGTGGCAGGTGAAATCTGGAACTCTGTTTGACAATATCGTAATCACTGATGAGCCAGAGCATGCCAAACAGCTGGCTGAAGACACATGGGGAAAACAAAAAGATGCTGAGAAAGCAGCATTTGAAGAGGCAGAGAAGAAACAGGAGGAGGAATCAAAGGATGAACCAGCTGATTCTGATGTTGAGGATGAAGATGAAGATGCTGATTCCGGAGAGGATTCTGATGCTGAATCCAAACTGGAAGAGGCTGAAGAGGCTGTTGAAGAGGCACCAATTTTATTTCTCTTTTTTGCTTCTCATTTGTTAGTTGTAGGAAGAGAGAACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

433

Amino Acids

49.3

Weight (kDa)

4.45

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	28 - 263	1.3e-59	Calreticulin family
Calreticulin	PF00262	265 - 338	1.4e-21	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	967
Acc36I	ACCTGC	1 cut(s)	967
AccB1I	GGYRCC	2 cut(s)	889, 1237
AccI	GTMKAC	1 cut(s)	528
AccIII	TCCGGA	1 cut(s)	1178
AciI	CCGC	3 cut(s)	69, 330, 544
AclI	AACGTT	1 cut(s)	115
AclWI	GGATC	3 cut(s)	624, 638, 651
AcsI	RAATTY	3 cut(s)	92, 263, 683
AcuI	CTGAAG	4 cut(s)	684, 720, 1068, 1239
AcyI	GRCGYC	2 cut(s)	5, 32
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	183, 774
AgsI	TTSAA	4 cut(s)	952, 968, 1094, 1232
AhlI	ACTAGT	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	287
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	6 cut(s)	27, 155, 251, 517, 1042, 1139
AluI	AGCT	6 cut(s)	27, 155, 251, 517, 1042, 1139
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	624, 638, 651
AlwNI	CAGNNNCTG	1 cut(s)	698
Aor13HI	TCCGGA	1 cut(s)	1178
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	597, 1085
ApoI	RAATTY	3 cut(s)	92, 263, 683
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	6 cut(s)	170, 371, 398, 806, 848, 991
AsuII	TTCGAA	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	2 cut(s)	889, 1237
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	4 cut(s)	70, 672, 708, 1056
BbvI	GCAGC	2 cut(s)	609, 1097
BccI	CCATC	4 cut(s)	95, 99, 785, 821
BceAI	ACGGC	2 cut(s)	44, 205
BciVI	GTATCC	2 cut(s)	221, 422
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	500
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	4 cut(s)	9, 24, 152, 287
BfmI	CTRYAG	2 cut(s)	559, 604
BfuAI	ACCTGC	1 cut(s)	967
BfuI	GTATCC	2 cut(s)	221, 422
BisI	GCNGC	2 cut(s)	598, 1086
BlsI	GCNGC	2 cut(s)	599, 1087
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	645, 891, 1239
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	7 cut(s)	184, 411, 541, 573, 1063, 1159, 1183
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	4 cut(s)	70, 672, 708, 1056
Bpu14I	TTCGAA	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	366, 615
BsaHI	GRCGYC	2 cut(s)	5, 32
BsaJI	CCNNGG	2 cut(s)	72, 735
BsaWI	WCCGGW	2 cut(s)	176, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 774
Bse1I	ACTGG	6 cut(s)	137, 219, 295, 598, 674, 1212
Bse8I	GATNNNNATC	2 cut(s)	366, 615
BseAI	TCCGGA	1 cut(s)	1178
BseDI	CCNNGG	2 cut(s)	72, 735
BseGI	GGATG	9 cut(s)	110, 148, 540, 564, 687, 784, 813, 1135, 1162
BseJI	GATNNNNATC	2 cut(s)	366, 615
BseLI	CCNNNNNNNGG	2 cut(s)	183, 774
BseMII	CTCAG	3 cut(s)	243, 367, 1068
BseNI	ACTGG	6 cut(s)	137, 219, 295, 598, 674, 1212
BseRI	GAGGAG	3 cut(s)	44, 101, 1130
BseXI	GCAGC	2 cut(s)	609, 1097
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	2 cut(s)	889, 1237
BsiSI	CCGG	2 cut(s)	177, 1179
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	183, 774
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	415
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	1178
Bsp143I	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
BspACI	CCGC	3 cut(s)	69, 330, 544
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	3 cut(s)	244, 366, 1069
BspEI	TCCGGA	1 cut(s)	1178
BspLI	GGNNCC	3 cut(s)	645, 891, 1239
BspMI	ACCTGC	1 cut(s)	967
BspPI	GGATC	3 cut(s)	624, 638, 651
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	2 cut(s)	889, 1237
BsrI	ACTGG	6 cut(s)	137, 219, 295, 598, 674, 1212
BssECI	CCNNGG	2 cut(s)	72, 735
BssMI	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
BssNAI	GTATAC	1 cut(s)	529
BssNI	GRCGYC	2 cut(s)	5, 32
BssT1I	CCWWGG	2 cut(s)	72, 735
Bst1107I	GTATAC	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	233, 608
Bst6I	CTCTTC	5 cut(s)	1089, 1206, 1215, 1227, 1279
BstACI	GRCGYC	2 cut(s)	5, 32
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	450, 1032, 1044
BstDEI	CTNAG	3 cut(s)	252, 353, 1077
BstF5I	GGATG	9 cut(s)	110, 148, 540, 564, 687, 784, 813, 1135, 1162
BstKTI	GATC	6 cut(s)	42, 370, 486, 619, 646, 931
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 248, 336, 1082, 1223
BstNSI	RCATGY	2 cut(s)	452, 1034
BstSFI	CTRYAG	2 cut(s)	559, 604
BstV1I	GCAGC	2 cut(s)	609, 1097
BstV2I	GAAGAC	4 cut(s)	70, 672, 708, 1056
BstX2I	RGATCY	2 cut(s)	616, 643
BstXI	CCANNNNNNTGG	1 cut(s)	1042
BstYI	RGATCY	2 cut(s)	616, 643
BstZ17I	GTATAC	1 cut(s)	529
BsuI	GTATCC	2 cut(s)	221, 422
BsuRI	GGCC	1 cut(s)	415
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	9 cut(s)	110, 148, 540, 564, 687, 784, 813, 1135, 1162
BtsIMutI	CAGTG	4 cut(s)	226, 361, 613, 1014
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	3 cut(s)	450, 1032, 1044
CaiI	CAGNNNCTG	1 cut(s)	698
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	6 cut(s)	311, 406, 449, 524, 1031, 1056
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	252, 353, 1077
DpnI	GATC	6 cut(s)	41, 369, 485, 618, 645, 930
DpnII	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
Eam1104I	CTCTTC	5 cut(s)	1089, 1206, 1215, 1227, 1279
EarI	CTCTTC	5 cut(s)	1089, 1206, 1215, 1227, 1279
EciI	GGCGGA	2 cut(s)	58, 533
Eco130I	CCWWGG	2 cut(s)	72, 735
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	421
Eco57I	CTGAAG	4 cut(s)	684, 720, 1068, 1239
EcoRI	GAATTC	2 cut(s)	263, 683
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	72, 735
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	72, 735
FaeI	CATG	6 cut(s)	314, 409, 452, 527, 1034, 1059
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	6 cut(s)	310, 405, 448, 523, 1030, 1055
FbaI	TGATCA	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	598, 1086
FokI	GGATG	9 cut(s)	117, 155, 527, 551, 674, 791, 800, 1142, 1169
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	598, 1086
FspBI	CTAG	4 cut(s)	9, 24, 152, 287
GluI	GCNGC	2 cut(s)	598, 1086
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	2 cut(s)	177, 1179
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	2 cut(s)	5, 32
Hin1II	CATG	6 cut(s)	314, 409, 452, 527, 1034, 1059
HinfI	GANTC	5 cut(s)	1121, 1142, 1175, 1187, 1199
HpaII	CCGG	2 cut(s)	177, 1179
HphI	GGTGA	6 cut(s)	170, 371, 398, 806, 848, 991
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	6 cut(s)	130, 372, 748, 919, 1147, 1192
Hpy188III	TCNNGA	4 cut(s)	487, 647, 987, 1179
Hpy8I	GTNNAC	1 cut(s)	529
Hpy99I	CGWCG	2 cut(s)	65, 962
HpyAV	CCTTC	3 cut(s)	133, 484, 880
HpyCH4III	ACNGT	2 cut(s)	233, 608
HpyCH4IV	ACGT	3 cut(s)	115, 495, 957
HpyCH4V	TGCA	2 cut(s)	448, 452
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 248, 336, 1082, 1223
HpyF3I	CTNAG	3 cut(s)	252, 353, 1077
HpySE526I	ACGT	3 cut(s)	115, 495, 957
Hsp92I	GRCGYC	2 cut(s)	5, 32
Hsp92II	CATG	6 cut(s)	314, 409, 452, 527, 1034, 1059
Kpn2I	TCCGGA	1 cut(s)	1178
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
Lsp1109I	GCAGC	2 cut(s)	609, 1097
LweI	GCATC	7 cut(s)	184, 411, 541, 573, 1063, 1159, 1183
MaeI	CTAG	4 cut(s)	9, 24, 152, 287
MaeII	ACGT	3 cut(s)	115, 495, 957
MalI	GATC	6 cut(s)	41, 369, 485, 618, 645, 930
MboI	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
MflI	RGATCY	2 cut(s)	616, 643
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	8 cut(s)	92, 263, 347, 453, 683, 855, 968, 1242
MmeI	TCCRAC	1 cut(s)	98
MroI	TCCGGA	1 cut(s)	1178
MseI	TTAA	2 cut(s)	123, 858
MslI	CAYNNNNRTG	1 cut(s)	287
MspA1I	CMGCKG	3 cut(s)	251, 1042, 1139
MspI	CCGG	2 cut(s)	177, 1179
MwoI	GCNNNNNNNGC	5 cut(s)	11, 248, 336, 1082, 1223
NdeII	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
NlaIII	CATG	6 cut(s)	314, 409, 452, 527, 1034, 1059
NlaIV	GGNNCC	3 cut(s)	645, 891, 1239
NspI	RCATGY	2 cut(s)	452, 1034
NspV	TTCGAA	1 cut(s)	96
OliI	CACNNNNGTG	1 cut(s)	287
PaeI	GCATGC	2 cut(s)	452, 1034
PaqCI	CACCTGC	1 cut(s)	967
PfeI	GAWTC	5 cut(s)	1121, 1142, 1175, 1187, 1199
PkrI	GCNGC	2 cut(s)	599, 1087
Psp1406I	AACGTT	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	645, 891, 1239
PspPI	GGNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	854, 886
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	2 cut(s)	616, 643
PvuII	CAGCTG	3 cut(s)	251, 1042, 1139
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	123, 858
SatI	GCNGC	2 cut(s)	598, 1086
Sau3AI	GATC	6 cut(s)	39, 367, 483, 616, 643, 928
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	7 cut(s)	184, 411, 541, 573, 1063, 1159, 1183
SfcI	CTRYAG	2 cut(s)	559, 604
SfuI	TTCGAA	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	286
SphI	GCATGC	2 cut(s)	452, 1034
Sse9I	AATT	8 cut(s)	92, 263, 347, 453, 683, 855, 968, 1242
SsiI	CCGC	3 cut(s)	69, 330, 544
SspMI	CTAG	4 cut(s)	9, 24, 152, 287
StyI	CCWWGG	2 cut(s)	72, 735
TaaI	ACNGT	2 cut(s)	233, 608
TaiI	ACGT	3 cut(s)	118, 498, 960
TaqI	TCGA	3 cut(s)	16, 84, 96
TasI	AATT	8 cut(s)	92, 263, 347, 453, 683, 855, 968, 1242
TfiI	GAWTC	5 cut(s)	1121, 1142, 1175, 1187, 1199
Tru1I	TTAA	2 cut(s)	123, 858
Tru9I	TTAA	2 cut(s)	123, 858
TscAI	CASTG	4 cut(s)	226, 361, 613, 1021
TseI	GCWGC	2 cut(s)	597, 1085
TspDTI	ATGAA	5 cut(s)	327, 676, 1146, 1173, 1179
TspGWI	ACGGA	1 cut(s)	483
TspRI	CASTG	4 cut(s)	226, 361, 613, 1021
XapI	RAATTY	3 cut(s)	92, 263, 683
XceI	RCATGY	2 cut(s)	452, 1034
XmiI	GTMKAC	1 cut(s)	528
XspI	CTAG	4 cut(s)	9, 24, 152, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.