Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016008.1

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Reverse (-)

17304 .. 19025

Gene Structure 1722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016008.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggcgtctagggctcgacatcctagcttggcgtccttgatccttctctctctcctcgccgtcgcctccgccaaggtcttcttcgaagagaaattcgaagatggatgggagaaacattgggttaaatctgactggaagaaagatgagaacctagctggggaatggaactacacctctggcaaatggaacggcgacgctaatgacaaaggtatccaaaccagtgaggactaccggttctatgccatatcagctgagttccctgaattcagcaacaaggataaaacactagtgttccagttttctgtgaagcatgaacagaaacttgactgtggcggtggctatatcaaattgctcagtggtgatgtagatcagaagaagtttggtggggataccccatacaggtttgtgatctcaccttttggtttgagtgtctgctcattttgttttggaagagagaactgtgagagggaagatactgctgcatgttgctatgccgaactgcttattagctctgatgtcttaaaatcttcatttagctgctgtttgagccatgagaacaatcatgagctattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

191

Amino Acids

21.6

Weight (kDa)

5.27

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 333
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	92, 263
AcyI	GRCGYC	2 cut(s)	5, 32
AfiI	CCNNNNNNNGG	2 cut(s)	157, 399
AgeI	ACCGGT	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	6 cut(s)	27, 155, 251, 510, 537, 568
AluI	AGCT	6 cut(s)	27, 155, 251, 510, 537, 568
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	479, 537
ApoI	RAATTY	2 cut(s)	92, 263
AsiGI	ACCGGT	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	371, 405
AsuII	TTCGAA	2 cut(s)	84, 96
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	466, 524
BccI	CCATC	2 cut(s)	95, 99
BceAI	ACGGC	2 cut(s)	44, 205
BciVI	GTATCC	2 cut(s)	221, 382
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	4 cut(s)	9, 24, 152, 287
BfuI	GTATCC	2 cut(s)	221, 382
BisI	GCNGC	2 cut(s)	480, 538
BlsI	GCNGC	2 cut(s)	481, 539
BpiI	GAAGAC	1 cut(s)	70
Bpu14I	TTCGAA	2 cut(s)	84, 96
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	2 cut(s)	5, 32
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 399
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	137, 219, 295
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	19, 110
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	157, 399
BseMII	CTCAG	2 cut(s)	243, 367
BseNI	ACTGG	3 cut(s)	137, 219, 295
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	466, 524
BseYI	CCCAGC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	157, 399
Bsp119I	TTCGAA	2 cut(s)	84, 96
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	39, 367, 408
BspACI	CCGC	2 cut(s)	69, 333
BspCNI	CTCAG	2 cut(s)	244, 366
BspHI	TCATGA	1 cut(s)	562
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	2 cut(s)	84, 96
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	137, 219, 295
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	3 cut(s)	39, 367, 408
BssNI	GRCGYC	2 cut(s)	5, 32
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	329, 461
Bst6I	CTCTTC	2 cut(s)	81, 445
BstACI	GRCGYC	2 cut(s)	5, 32
BstBI	TTCGAA	2 cut(s)	84, 96
BstDEI	CTNAG	2 cut(s)	252, 353
BstF5I	GGATG	2 cut(s)	19, 110
BstKTI	GATC	3 cut(s)	42, 370, 411
BstMBI	GATC	3 cut(s)	39, 367, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 248, 546
BstNSI	RCATGY	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	466, 524
BstV2I	GAAGAC	1 cut(s)	70
BsuI	GTATCC	2 cut(s)	221, 382
BtsCI	GGATG	2 cut(s)	19, 110
BtsIMutI	CAGTG	2 cut(s)	226, 361
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	231
CseI	GACGC	2 cut(s)	21, 203
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	4 cut(s)	311, 483, 551, 563
CviJI	RGCY	9 cut(s)	14, 27, 155, 251, 339, 510, 537, 549, 568
CviKI_1	RGCY	9 cut(s)	14, 27, 155, 251, 339, 510, 537, 549, 568
DdeI	CTNAG	2 cut(s)	252, 353
DpnI	GATC	3 cut(s)	41, 369, 410
DpnII	GATC	3 cut(s)	39, 367, 408
Eam1104I	CTCTTC	2 cut(s)	81, 445
EarI	CTCTTC	2 cut(s)	81, 445
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	16
EcoRI	GAATTC	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	314, 486, 554, 566
FaiI	YATR	9 cut(s)	240, 245, 312, 342, 397, 484, 492, 552, 564
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	4 cut(s)	310, 482, 550, 562
Fnu4HI	GCNGC	2 cut(s)	480, 538
FokI	GGATG	2 cut(s)	6, 117
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	480, 538
FspBI	CTAG	4 cut(s)	9, 24, 152, 287
GluI	GCNGC	2 cut(s)	480, 538
GsaI	CCCAGC	1 cut(s)	159
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	2 cut(s)	21, 203
Hin1I	GRCGYC	2 cut(s)	5, 32
Hin1II	CATG	4 cut(s)	314, 486, 554, 566
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	2 cut(s)	371, 405
Hpy188I	TCNGA	3 cut(s)	130, 372, 514
Hpy188III	TCNNGA	1 cut(s)	563
Hpy99I	CGWCG	2 cut(s)	65, 197
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	329, 461
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 248, 546
HpyF3I	CTNAG	2 cut(s)	252, 353
Hsp92I	GRCGYC	2 cut(s)	5, 32
Hsp92II	CATG	4 cut(s)	314, 486, 554, 566
Kzo9I	GATC	3 cut(s)	39, 367, 408
LpnPI	CCDG	8 cut(s)	118, 141, 162, 232, 245, 273, 308, 385
Lsp1109I	GCAGC	2 cut(s)	466, 524
MaeI	CTAG	4 cut(s)	9, 24, 152, 287
MalI	GATC	3 cut(s)	41, 369, 410
MboI	GATC	3 cut(s)	39, 367, 408
MboII	GAAGA	9 cut(s)	70, 73, 98, 110, 148, 385, 462, 482, 519
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	92, 263, 347
MnlI	CCTC	5 cut(s)	65, 76, 184, 217, 459
MseI	TTAA	2 cut(s)	123, 521
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	11, 248, 546
NdeII	GATC	3 cut(s)	39, 367, 408
NlaIII	CATG	4 cut(s)	314, 486, 554, 566
NspI	RCATGY	1 cut(s)	486
NspV	TTCGAA	2 cut(s)	84, 96
PagI	TCATGA	1 cut(s)	562
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	481, 539
PspFI	CCCAGC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	123, 521
SatI	GCNGC	2 cut(s)	480, 538
Sau3AI	GATC	3 cut(s)	39, 367, 408
SduI	GDGCHC	1 cut(s)	16
SfuI	TTCGAA	2 cut(s)	84, 96
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	3 cut(s)	92, 263, 347
SsiI	CCGC	2 cut(s)	69, 333
SspMI	CTAG	4 cut(s)	9, 24, 152, 287
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	329, 461
TaqI	TCGA	3 cut(s)	16, 84, 96
TasI	AATT	3 cut(s)	92, 263, 347
Tru1I	TTAA	2 cut(s)	123, 521
Tru9I	TTAA	2 cut(s)	123, 521
TscAI	CASTG	2 cut(s)	226, 361
TseI	GCWGC	2 cut(s)	479, 537
TspDTI	ATGAA	2 cut(s)	327, 519
TspRI	CASTG	2 cut(s)	226, 361
XapI	RAATTY	2 cut(s)	92, 263
XceI	RCATGY	1 cut(s)	486
XspI	CTAG	4 cut(s)	9, 24, 152, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.