Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Reverse (-)

21089565 .. 21092709

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGAAACTAAACCCTAAATTCATCTCTTTGATTCTTTTCGCTCTCGTGGTGATCGTCTCTGCTGAAGTTATCTTCGAGGAGAAATTCGAAGATGGATGGGAGAAGAGATGGGTAAAATCTGACTGGAAGAAAGATGATAATACTGCTGGGGAATGGAAACACACAGCTGGAAATTGGTCTGGTGATGCTAACGATAAAGGTATCCAAACTAGCGAGGACTACAGATTCTACGCTATATCAGCTGAATTCCCTGAGTTTAGCAACAAGGATAAGACCTTAGTCTTCCAATTCTCTGTCAAGCATGAGCAGAAGCTTGACTGTGGTGGTGGCTACATGAAGTTGCTAAGTGATGATGTTGACCAGACGAAATTCGGAGGAGACACTCCTTACAGCATTATGTTTGGGCCAGATATTTGTGGCTACAGCACTAAGAAAGTACATGCTATCCTTACTTACAATGGAACCAACCATTTGATCAAGAAGGAGGTCCCATGTGAGACTGATCAGCTTACTCACGTGTACACCTTCGTCCTCCGTCCAGATGCTACTTACAGTATTTTGATTGATAATGTTGAGAAGCAAACTGGTAGCCTTTACTCTGACTGGGATCTTCTCCCAGCAAAGAAGATTAAGGATCCAAGTGCTAAGAAGCCTGAGGACTGGGATGACAAAGAGTACATTCCAGATCCAGAAGACACTAAGCCAGCGGGATATGATGACATCCCAAAGGAGATTCCAGACACTGACGCAAAGAAGCCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACAACCCTGAATTCAAGGATGACCCAGAACTCTATGTCTTCCCCAAATTGAAGTATGTTGGAGTTGAGTTGTGGCAGGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGATGCGGAGAAAGCAGCATTTGACGAAGCTGAGAAGAAGAGAGAGGAAGAGGAATCAAAGGATGCTCCTGCTGAATCCGACGCTGAGGAAGAAGCAGAAGATGATGACAATGAAGGAGATGACTCAGACAATGAATCAAAGTCTGAGGAAACCAAGGAGGCCGAGGAAACCAAGGAAGCCGAGGAAACCGATGCCGCCCATGACGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

425

Amino Acids

48.53

Weight (kDa)

4.46

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	26 - 261	9.9e-58	Calreticulin family
Calreticulin	PF00262	263 - 336	4.2e-20	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	961
Acc36I	ACCTGC	1 cut(s)	961
AciI	CCGC	4 cut(s)	710, 861, 1070, 1260
AclWI	GGATC	4 cut(s)	618, 632, 645, 683
AcoI	YGGCCR	1 cut(s)	1038
AcsI	RAATTY	5 cut(s)	20, 86, 248, 371, 905
AcuI	CTGAAG	1 cut(s)	87
AcvI	CACGTG	1 cut(s)	520
AfaI	GTAC	5 cut(s)	441, 524, 680, 824, 1025
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	910, 946
AjnI	CCWGG	1 cut(s)	1049
AluBI	AGCT	6 cut(s)	170, 245, 316, 511, 1094, 1273
AluI	AGCT	6 cut(s)	170, 245, 316, 511, 1094, 1273
Alw21I	GWGCWC	1 cut(s)	1275
Alw26I	GTCTC	3 cut(s)	64, 375, 494
AlwI	GGATC	4 cut(s)	618, 632, 645, 683
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	818
AoxI	GGCC	3 cut(s)	407, 1038, 1224
ApeKI	GCWGC	1 cut(s)	1079
ApoI	RAATTY	5 cut(s)	20, 86, 248, 371, 905
AspS9I	GGNCC	2 cut(s)	407, 490
AsuHPI	GGTGA	5 cut(s)	64, 197, 800, 842, 985
AsuII	TTCGAA	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	818
AvaII	GGWCC	1 cut(s)	490
AxyI	CCTNAGG	2 cut(s)	657, 762
BamHI	GGATCC	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	1275
BauI	CACGAG	1 cut(s)	47
BbrPI	CACGTG	1 cut(s)	520
BbsI	GAAGAC	3 cut(s)	277, 702, 925
Bbv12I	GWGCWC	1 cut(s)	1275
BbvCI	CCTCAGC	1 cut(s)	1149
BbvI	GCAGC	1 cut(s)	1091
BccI	CCATC	4 cut(s)	89, 93, 105, 779
BciT130I	CCWGG	1 cut(s)	1051
BciVI	GTATCC	1 cut(s)	215
BclI	TGATCA	2 cut(s)	477, 505
BcoDI	GTCTC	3 cut(s)	64, 375, 494
BfaI	CTAG	1 cut(s)	213
BfmI	CTRYAG	2 cut(s)	223, 424
BfuAI	ACCTGC	1 cut(s)	961
BfuI	GTATCC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	1080, 1260
BlsI	GCNGC	2 cut(s)	1081, 1261
Bme1390I	CCNGG	1 cut(s)	1051
Bme18I	GGWCC	1 cut(s)	490
BmeT110I	CYCGRG	1 cut(s)	818
BmgT120I	GGNCC	2 cut(s)	407, 490
BmiI	GGNNCC	5 cut(s)	466, 492, 639, 885, 985
BmrFI	CCNGG	1 cut(s)	1051
BmrI	ACTGGG	3 cut(s)	616, 673, 778
BmsI	GCATC	5 cut(s)	178, 535, 1057, 1117, 1246
BmuI	ACTGGG	3 cut(s)	616, 673, 778
BoxI	GACNNNNGTC	1 cut(s)	281
BpiI	GAAGAC	3 cut(s)	277, 702, 925
Bpu10I	CCTNAGC	1 cut(s)	1149
Bpu14I	TTCGAA	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	520
BsaJI	CCNNGG	6 cut(s)	1041, 1050, 1218, 1227, 1236, 1245
Bse1I	ACTGG	5 cut(s)	131, 592, 611, 668, 773
Bse21I	CCTNAGG	2 cut(s)	657, 762
BseBI	CCWGG	1 cut(s)	1051
BseDI	CCNNGG	6 cut(s)	1041, 1050, 1218, 1227, 1236, 1245
BseGI	GGATG	7 cut(s)	104, 673, 723, 778, 919, 1072, 1132
BseMII	CTCAG	7 cut(s)	246, 648, 753, 1086, 1140, 1200, 1203
BseNI	ACTGG	5 cut(s)	131, 592, 611, 668, 773
BseRI	GAGGAG	2 cut(s)	95, 393
BseXI	GCAGC	1 cut(s)	1091
BseYI	CCCAGC	2 cut(s)	149, 619
BshFI	GGCC	3 cut(s)	409, 1040, 1226
BsiHKAI	GWGCWC	1 cut(s)	1275
BsiHKCI	CYCGRG	1 cut(s)	818
BslFI	GGGAC	1 cut(s)	476
BsmAI	GTCTC	3 cut(s)	64, 375, 494
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	3 cut(s)	409, 1040, 1226
BsoBI	CYCGRG	1 cut(s)	818
Bsp119I	TTCGAA	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	1275
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
BspACI	CCGC	4 cut(s)	710, 861, 1070, 1260
BspANI	GGCC	3 cut(s)	409, 1040, 1226
BspCNI	CTCAG	7 cut(s)	247, 649, 754, 1087, 1141, 1201, 1202
BspLI	GGNNCC	5 cut(s)	466, 492, 639, 885, 985
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	4 cut(s)	618, 632, 645, 683
BspT104I	TTCGAA	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	5 cut(s)	131, 592, 611, 668, 773
BssECI	CCNNGG	6 cut(s)	1041, 1050, 1218, 1227, 1236, 1245
BssMI	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	1218, 1236
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	1051
Bst4CI	ACNGT	2 cut(s)	323, 557
Bst6I	CTCTTC	3 cut(s)	101, 1097, 1107
BstAUI	TGTACA	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	520
BstBI	TTCGAA	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	708
BstF5I	GGATG	7 cut(s)	104, 673, 723, 778, 919, 1072, 1132
BstKTI	GATC	7 cut(s)	57, 480, 508, 613, 640, 691, 894
BstMAI	GTCTC	3 cut(s)	64, 375, 494
BstMBI	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 1076
BstNI	CCWGG	1 cut(s)	1051
BstNSI	RCATGY	1 cut(s)	446
BstPAI	GACNNNNGTC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	1049
BstSFI	CTRYAG	2 cut(s)	223, 424
BstV1I	GCAGC	1 cut(s)	1091
BstV2I	GAAGAC	3 cut(s)	277, 702, 925
BstX2I	RGATCY	3 cut(s)	610, 637, 688
BstYI	RGATCY	3 cut(s)	610, 637, 688
Bsu36I	CCTNAGG	2 cut(s)	657, 762
BsuI	GTATCC	1 cut(s)	215
BsuRI	GGCC	3 cut(s)	409, 1040, 1226
BtgZI	GCGATG	1 cut(s)	1026
BtsCI	GGATG	7 cut(s)	104, 673, 723, 778, 919, 1072, 1132
BtsIMutI	CAGTG	1 cut(s)	744
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	1 cut(s)	708
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	2 cut(s)	407, 490
CseI	GACGC	2 cut(s)	758, 1154
Csp6I	GTAC	5 cut(s)	440, 523, 679, 823, 1024
CviAII	CATG	5 cut(s)	305, 337, 443, 495, 1265
CviQI	GTAC	5 cut(s)	440, 523, 679, 823, 1024
DpnI	GATC	7 cut(s)	56, 479, 507, 612, 639, 690, 893
DpnII	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
EaeI	YGGCCR	1 cut(s)	1038
Eam1104I	CTCTTC	3 cut(s)	101, 1097, 1107
EarI	CTCTTC	3 cut(s)	101, 1097, 1107
Ecl136II	GAGCTC	1 cut(s)	1273
Eco130I	CCWWGG	2 cut(s)	1218, 1236
Eco24I	GRGCYC	1 cut(s)	1275
Eco47I	GGWCC	1 cut(s)	490
Eco53kI	GAGCTC	1 cut(s)	1273
Eco57I	CTGAAG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	520
Eco81I	CCTNAGG	2 cut(s)	657, 762
Eco88I	CYCGRG	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	1273
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRI	GAATTC	2 cut(s)	248, 905
EcoRII	CCWGG	1 cut(s)	1049
EcoT14I	CCWWGG	2 cut(s)	1218, 1236
EcoT38I	GRGCYC	1 cut(s)	1275
ErhI	CCWWGG	2 cut(s)	1218, 1236
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	5 cut(s)	308, 340, 446, 498, 1268
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	5 cut(s)	304, 336, 442, 494, 1264
FauI	CCCGC	2 cut(s)	703, 868
FbaI	TGATCA	2 cut(s)	477, 505
Fnu4HI	GCNGC	2 cut(s)	1080, 1260
FokI	GGATG	7 cut(s)	111, 680, 710, 785, 926, 1079, 1139
FriOI	GRGCYC	1 cut(s)	1275
Fsp4HI	GCNGC	2 cut(s)	1080, 1260
FspBI	CTAG	1 cut(s)	213
GluI	GCNGC	2 cut(s)	1080, 1260
GsaI	CCCAGC	2 cut(s)	153, 623
HaeIII	GGCC	3 cut(s)	409, 1040, 1226
HgaI	GACGC	2 cut(s)	758, 1154
Hin1II	CATG	5 cut(s)	308, 340, 446, 498, 1268
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	7 cut(s)	34, 228, 736, 1118, 1139, 1187, 1199
HphI	GGTGA	5 cut(s)	64, 197, 800, 842, 985
Hpy166II	GTNNAC	4 cut(s)	361, 523, 525, 795
Hpy188I	TCNGA	6 cut(s)	124, 377, 604, 1144, 1192, 1210
Hpy188III	TCNNGA	5 cut(s)	481, 542, 686, 692, 740
Hpy8I	GTNNAC	4 cut(s)	361, 523, 525, 795
Hpy99I	CGWCG	1 cut(s)	1148
HpyAV	CCTTC	4 cut(s)	478, 538, 874, 1172
HpyCH4III	ACNGT	2 cut(s)	323, 557
HpyCH4IV	ACGT	1 cut(s)	519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 1076
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	308, 340, 446, 498, 1268
Ksp22I	TGATCA	2 cut(s)	477, 505
Kzo9I	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
LmnI	GCTCC	2 cut(s)	889, 1135
Lsp1109I	GCAGC	1 cut(s)	1091
LweI	GCATC	5 cut(s)	178, 535, 1057, 1117, 1246
MaeI	CTAG	1 cut(s)	213
MaeII	ACGT	1 cut(s)	519
MalI	GATC	7 cut(s)	56, 479, 507, 612, 639, 690, 893
MboI	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
MflI	RGATCY	3 cut(s)	610, 637, 688
MhlI	GDGCHC	1 cut(s)	1275
MluCI	AATT	9 cut(s)	20, 86, 175, 248, 290, 371, 849, 905, 941
MlyI	GAGTC	1 cut(s)	1181
MmeI	TCCRAC	2 cut(s)	934, 1167
MseI	TTAA	2 cut(s)	633, 852
MslI	CAYNNNNRTG	1 cut(s)	1065
MspA1I	CMGCKG	3 cut(s)	170, 245, 710
MspR9I	CCNGG	1 cut(s)	1051
MvaI	CCWGG	1 cut(s)	1051
MwoI	GCNNNNNNNGC	2 cut(s)	242, 1076
NdeII	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
NlaIII	CATG	5 cut(s)	308, 340, 446, 498, 1268
NlaIV	GGNNCC	5 cut(s)	466, 492, 639, 885, 985
NmeAIII	GCCGAG	3 cut(s)	1066, 1252, 1270
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	6 cut(s)	34, 228, 736, 1118, 1139, 1199
PflFI	GACNNNGTC	1 cut(s)	998
PkrI	GCNGC	2 cut(s)	1081, 1261
PleI	GAGTC	1 cut(s)	1181
PmaCI	CACGTG	1 cut(s)	520
PmlI	CACGTG	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	1181
Ppu21I	YACGTR	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	281
Psp124BI	GAGCTC	1 cut(s)	1275
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	1049
PspCI	CACGTG	1 cut(s)	520
PspFI	CCCAGC	2 cut(s)	149, 619
PspGI	CCWGG	1 cut(s)	1049
PspN4I	GGNNCC	5 cut(s)	466, 492, 639, 885, 985
PspPI	GGNCC	2 cut(s)	407, 490
PspPPI	RGGWCCY	1 cut(s)	490
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	3 cut(s)	610, 637, 688
PsyI	GACNNNGTC	1 cut(s)	998
PvuII	CAGCTG	2 cut(s)	170, 245
RsaI	GTAC	5 cut(s)	441, 524, 680, 824, 1025
RsaNI	GTAC	5 cut(s)	440, 523, 679, 823, 1024
RseI	CAYNNNNRTG	1 cut(s)	1065
SacI	GAGCTC	1 cut(s)	1275
SaqAI	TTAA	2 cut(s)	633, 852
SatI	GCNGC	2 cut(s)	1080, 1260
Sau3AI	GATC	7 cut(s)	54, 477, 505, 610, 637, 688, 891
Sau96I	GGNCC	2 cut(s)	407, 490
SchI	GAGTC	1 cut(s)	1181
ScrFI	CCNGG	1 cut(s)	1051
SduI	GDGCHC	1 cut(s)	1275
SfaNI	GCATC	5 cut(s)	178, 535, 1057, 1117, 1246
SfcI	CTRYAG	2 cut(s)	223, 424
SfuI	TTCGAA	1 cut(s)	90
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	1065
Sse9I	AATT	9 cut(s)	20, 86, 175, 248, 290, 371, 849, 905, 941
SsiI	CCGC	4 cut(s)	710, 861, 1070, 1260
SspMI	CTAG	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	1275
StyD4I	CCNGG	1 cut(s)	1049
StyI	CCWWGG	2 cut(s)	1218, 1236
TaaI	ACNGT	2 cut(s)	323, 557
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	4 cut(s)	78, 90, 894, 993
TasI	AATT	9 cut(s)	20, 86, 175, 248, 290, 371, 849, 905, 941
TatI	WGTACW	4 cut(s)	439, 522, 678, 822
TauI	GCSGC	1 cut(s)	1262
TfiI	GAWTC	6 cut(s)	34, 228, 736, 1118, 1139, 1199
Tru1I	TTAA	2 cut(s)	633, 852
Tru9I	TTAA	2 cut(s)	633, 852
TscAI	CASTG	1 cut(s)	751
TseI	GCWGC	1 cut(s)	1079
TspDTI	ATGAA	5 cut(s)	13, 353, 792, 1191, 1212
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	751
Tth111I	GACNNNGTC	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	5 cut(s)	20, 86, 248, 371, 905
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.