Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Forward (+)

43259194 .. 43262666

Gene Structure 3473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCGTCTAGGGCTCGAAATCCTAGCTTGGCGTCCTTGATCCTCCTCTCTCTCCTCGCCGTCGCCTCCGCCAAGGTCTTCTTCGAAGAGAAATTCGAAGGGCTTGGCTTGAAAACTGAATTGGTTTTCAGCTTTGATGGATGGGAGAAACATTGGGTTAAATCCGACTGGAAGAAAGATGAGAACCTAGCTGGGGAATGGAACTACACCTCTGGCAAATGGAACGGCGACGCTAATGACAAAGGTATCCAAACCAGTGAGGACTACCGGTTCTATGCCATATCAGCTGAGTTCCCTGAATTCAGCAACAAGGATAAAACACTAGTGTTCCAGTTTTCTGTGAAGCATGAACAGAAACTTGACTGTGGTGGTGGCTACATCAAATTGCTCAGTGGTGATGTAGATCAGAAGAAGTTTGGTGGCGATACCCCATACAGCATCATGTTCGGGCCAGATATCTGTGGATACAGCACCAAGAAAGTGCATGCAATTCTCAACTACAACGGAACAAATAAATTGATCAAGAAGGATGTACCTTGTGAGACTGACCAGCTCACTCATGTCTATACCTTTATCATCCGCCCAGATGCTACCTACAGCATCCTTATTGACAATGTAGAAAAGCAAACTGGTAGCCTCTACAGTGATTGGGATCTTCTTCCTCCAAAGAAAATCAAGGATCCCGAAGCCAAGAAGCCTGAAGATTGGGAGGACAAGGAATTCATCCCAGACCCTGAAGACAAGAAGCCAGAGGGATATGATGACATTCCCAAGGAAATCTCAGATCCCGAAGCCAAGAAGCCCGAAGATTGGGATGATGAGGAAGATGGTGAATGGACAGCCCCAACCATCCCCAACCCTGAATACAAGGGTGAATGGAGCCCAAAGAAAATTAAGAACCCCAACTACAAGGGAAAGTGGAAGGCACCATTGATTGACAACCCAAAATTCACTGATGACCCTGACCTATATGTTTTCCCCAACTTGAAGTATGTCGGAATTGAATTGTGGCAGGTGAAATCTGGAACTCTGTTTGACAATATCGTGATCACTGATGAGCCGGAGTATGCCAAGCAGCTGGCTGAAGACACATGGGGAAAACAGAAAGATGCTGAGAAAGCAGCATTTGAAGAGGCGGAGAAGCTTCAACAGGAAGAGGAGTCCAAGGATGAGCCAGCTGATTCTGATGCTGAGGATGATGAAGATGATGCTGAAGAGGACTCTGATGCTGAATCCAAACTAGAAGAGGCTGAAGAGGCCGTGGAAGAGGCTGCAAAACATGATGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

430

Amino Acids

49.05

Weight (kDa)

4.45

Isoelectric Point (pI)

33.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	45 - 275	1.8e-58	Calreticulin family
Calreticulin	PF00262	277 - 350	9.1e-22	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1003
Acc36I	ACCTGC	1 cut(s)	1003
AccB1I	GGYRCC	1 cut(s)	925
AciI	CCGC	3 cut(s)	69, 580, 1136
AclWI	GGATC	5 cut(s)	34, 660, 674, 687, 779
AcsI	RAATTY	4 cut(s)	92, 299, 719, 947
AcuI	CTGAAG	5 cut(s)	720, 756, 1104, 1233, 1272
AcyI	GRCGYC	2 cut(s)	5, 32
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	193, 810
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	5 cut(s)	112, 988, 1004, 1130, 1148
AhlI	ACTAGT	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 104, 136
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	8 cut(s)	27, 132, 191, 287, 553, 1078, 1144, 1178
AluI	AGCT	8 cut(s)	27, 132, 191, 287, 553, 1078, 1144, 1178
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	5 cut(s)	34, 660, 674, 687, 779
AlwNI	CAGNNNCTG	1 cut(s)	734
AoxI	GGCC	2 cut(s)	449, 1257
ApeKI	GCWGC	3 cut(s)	1075, 1121, 1271
ApoI	RAATTY	4 cut(s)	92, 299, 719, 947
AsiGI	ACCGGT	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	4 cut(s)	407, 842, 884, 1027
AsuII	TTCGAA	2 cut(s)	84, 96
BaeI	ACNNNNGTAYC	2 cut(s)	229, 262
BamHI	GGATCC	1 cut(s)	679
BanI	GGYRCC	1 cut(s)	925
BanII	GRGCYC	2 cut(s)	16, 884
BbsI	GAAGAC	3 cut(s)	70, 744, 1092
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	3 cut(s)	1087, 1133, 1258
BccI	CCATC	4 cut(s)	131, 135, 821, 857
BceAI	ACGGC	3 cut(s)	44, 241, 1244
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciVI	GTATCC	2 cut(s)	257, 458
BclI	TGATCA	2 cut(s)	519, 1047
BcoDI	GTCTC	1 cut(s)	536
BcuI	ACTAGT	1 cut(s)	322
BfaI	CTAG	5 cut(s)	9, 24, 188, 323, 1241
BfmI	CTRYAG	3 cut(s)	595, 640, 1289
BfuAI	ACCTGC	1 cut(s)	1003
BfuI	GTATCC	2 cut(s)	257, 458
BisI	GCNGC	3 cut(s)	1076, 1122, 1272
BlsI	GCNGC	3 cut(s)	1077, 1123, 1273
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	3 cut(s)	681, 881, 927
BmsI	GCATC	7 cut(s)	447, 577, 609, 1099, 1177, 1198, 1216
BpiI	GAAGAC	3 cut(s)	70, 744, 1092
Bpu10I	CCTNAGC	1 cut(s)	1191
Bpu14I	TTCGAA	2 cut(s)	84, 96
BsaBI	GATNNNNATC	2 cut(s)	402, 651
BsaHI	GRCGYC	2 cut(s)	5, 32
BsaJI	CCNNGG	4 cut(s)	72, 771, 1164, 1260
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 810
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	4 cut(s)	173, 255, 331, 634
Bse8I	GATNNNNATC	2 cut(s)	402, 651
BseDI	CCNNGG	4 cut(s)	72, 771, 1164, 1260
BseGI	GGATG	9 cut(s)	146, 535, 576, 600, 723, 820, 849, 1174, 1201
BseJI	GATNNNNATC	2 cut(s)	402, 651
BseLI	CCNNNNNNNGG	2 cut(s)	193, 810
BseMII	CTCAG	5 cut(s)	279, 403, 795, 1104, 1182
BseNI	ACTGG	4 cut(s)	173, 255, 331, 634
BseRI	GAGGAG	3 cut(s)	35, 44, 1172
BseXI	GCAGC	3 cut(s)	1087, 1133, 1258
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	2 cut(s)	451, 1259
BshNI	GGYRCC	1 cut(s)	925
BshTI	ACCGGT	1 cut(s)	267
BsiSI	CCGG	2 cut(s)	268, 1061
BslI	CCNNNNNNNGG	2 cut(s)	193, 810
BsmAI	GTCTC	1 cut(s)	536
BsnI	GGCC	2 cut(s)	451, 1259
Bsp119I	TTCGAA	2 cut(s)	84, 96
Bsp1286I	GDGCHC	2 cut(s)	16, 884
Bsp143I	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
BspACI	CCGC	3 cut(s)	69, 580, 1136
BspANI	GGCC	2 cut(s)	451, 1259
BspCNI	CTCAG	5 cut(s)	280, 402, 794, 1105, 1183
BspLI	GGNNCC	3 cut(s)	681, 881, 927
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	5 cut(s)	34, 660, 674, 687, 779
BspT104I	TTCGAA	2 cut(s)	84, 96
BspT107I	GGYRCC	1 cut(s)	925
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	4 cut(s)	173, 255, 331, 634
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	4 cut(s)	72, 771, 1164, 1260
BssMI	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
BssNI	GRCGYC	2 cut(s)	5, 32
BssT1I	CCWWGG	3 cut(s)	72, 771, 1164
Bst4CI	ACNGT	3 cut(s)	365, 644, 1290
Bst6I	CTCTTC	7 cut(s)	81, 1125, 1149, 1209, 1239, 1248, 1260
BstACI	GRCGYC	2 cut(s)	5, 32
BstBI	TTCGAA	2 cut(s)	84, 96
BstC8I	GCNNGC	3 cut(s)	486, 1080, 1176
BstDEI	CTNAG	5 cut(s)	288, 389, 781, 1113, 1191
BstDSI	CCRYGG	1 cut(s)	1260
BstF5I	GGATG	9 cut(s)	146, 535, 576, 600, 723, 820, 849, 1174, 1201
BstKTI	GATC	7 cut(s)	42, 406, 522, 655, 682, 787, 1050
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 284, 1118, 1256
BstNSI	RCATGY	1 cut(s)	488
BstSFI	CTRYAG	3 cut(s)	595, 640, 1289
BstV1I	GCAGC	3 cut(s)	1087, 1133, 1258
BstV2I	GAAGAC	3 cut(s)	70, 744, 1092
BstX2I	RGATCY	3 cut(s)	652, 679, 784
BstXI	CCANNNNNNTGG	1 cut(s)	1078
BstYI	RGATCY	3 cut(s)	652, 679, 784
BsuI	GTATCC	2 cut(s)	257, 458
BsuRI	GGCC	2 cut(s)	451, 1259
BtgI	CCRYGG	1 cut(s)	1260
BtsCI	GGATG	9 cut(s)	146, 535, 576, 600, 723, 820, 849, 1174, 1201
BtsIMutI	CAGTG	5 cut(s)	262, 397, 649, 951, 1050
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	3 cut(s)	486, 1080, 1176
CaiI	CAGNNNCTG	1 cut(s)	734
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	2 cut(s)	21, 239
Csp6I	GTAC	1 cut(s)	533
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	6 cut(s)	347, 442, 485, 560, 1092, 1280
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	5 cut(s)	288, 389, 781, 1113, 1191
DpnI	GATC	7 cut(s)	41, 405, 521, 654, 681, 786, 1049
DpnII	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
Eam1104I	CTCTTC	7 cut(s)	81, 1125, 1149, 1209, 1239, 1248, 1260
EarI	CTCTTC	7 cut(s)	81, 1125, 1149, 1209, 1239, 1248, 1260
EciI	GGCGGA	3 cut(s)	58, 569, 1151
Eco130I	CCWWGG	3 cut(s)	72, 771, 1164
Eco24I	GRGCYC	2 cut(s)	16, 884
Eco32I	GATATC	1 cut(s)	457
Eco57I	CTGAAG	5 cut(s)	720, 756, 1104, 1233, 1272
EcoRI	GAATTC	2 cut(s)	299, 719
EcoRV	GATATC	1 cut(s)	457
EcoT14I	CCWWGG	3 cut(s)	72, 771, 1164
EcoT38I	GRGCYC	2 cut(s)	16, 884
ErhI	CCWWGG	3 cut(s)	72, 771, 1164
FaeI	CATG	6 cut(s)	350, 445, 488, 563, 1095, 1283
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	6 cut(s)	346, 441, 484, 559, 1091, 1279
FbaI	TGATCA	2 cut(s)	519, 1047
Fnu4HI	GCNGC	3 cut(s)	1076, 1122, 1272
FokI	GGATG	9 cut(s)	153, 542, 563, 587, 710, 827, 836, 1181, 1208
FriOI	GRGCYC	2 cut(s)	16, 884
Fsp4HI	GCNGC	3 cut(s)	1076, 1122, 1272
FspBI	CTAG	5 cut(s)	9, 24, 188, 323, 1241
GluI	GCNGC	3 cut(s)	1076, 1122, 1272
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	2 cut(s)	451, 1259
HapII	CCGG	2 cut(s)	268, 1061
HgaI	GACGC	2 cut(s)	21, 239
Hin1I	GRCGYC	2 cut(s)	5, 32
Hin1II	CATG	6 cut(s)	350, 445, 488, 563, 1095, 1283
HindIII	AAGCTT	1 cut(s)	1142
HinfI	GANTC	4 cut(s)	1160, 1181, 1220, 1232
HpaII	CCGG	2 cut(s)	268, 1061
HphI	GGTGA	4 cut(s)	407, 842, 884, 1027
Hpy188I	TCNGA	6 cut(s)	166, 408, 784, 998, 1186, 1225
Hpy188III	TCNNGA	5 cut(s)	523, 683, 788, 1023, 1045
Hpy99I	CGWCG	2 cut(s)	65, 233
HpyAV	CCTTC	3 cut(s)	92, 520, 916
HpyCH4III	ACNGT	3 cut(s)	365, 644, 1290
HpyCH4V	TGCA	3 cut(s)	484, 488, 1274
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 284, 1118, 1256
HpyF3I	CTNAG	5 cut(s)	288, 389, 781, 1113, 1191
Hsp92I	GRCGYC	2 cut(s)	5, 32
Hsp92II	CATG	6 cut(s)	350, 445, 488, 563, 1095, 1283
Ksp22I	TGATCA	2 cut(s)	519, 1047
Kzo9I	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
LmnI	GCTCC	1 cut(s)	879
Lsp1109I	GCAGC	3 cut(s)	1087, 1133, 1258
LweI	GCATC	7 cut(s)	447, 577, 609, 1099, 1177, 1198, 1216
MaeI	CTAG	5 cut(s)	9, 24, 188, 323, 1241
MalI	GATC	7 cut(s)	41, 405, 521, 654, 681, 786, 1049
MboI	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
MflI	RGATCY	3 cut(s)	652, 679, 784
MhlI	GDGCHC	2 cut(s)	16, 884
MlyI	GAGTC	2 cut(s)	1169, 1214
MmeI	TCCRAC	2 cut(s)	189, 976
MseI	TTAA	2 cut(s)	159, 894
MspA1I	CMGCKG	3 cut(s)	287, 1078, 1178
MspI	CCGG	2 cut(s)	268, 1061
MwoI	GCNNNNNNNGC	4 cut(s)	11, 284, 1118, 1256
NdeII	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
NlaIII	CATG	6 cut(s)	350, 445, 488, 563, 1095, 1283
NlaIV	GGNNCC	3 cut(s)	681, 881, 927
NspI	RCATGY	1 cut(s)	488
NspV	TTCGAA	2 cut(s)	84, 96
PaeI	GCATGC	1 cut(s)	488
PaqCI	CACCTGC	1 cut(s)	1003
PfeI	GAWTC	2 cut(s)	1181, 1232
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	1077, 1123, 1273
PleI	GAGTC	2 cut(s)	1168, 1214
PpsI	GAGTC	2 cut(s)	1168, 1214
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	3 cut(s)	681, 881, 927
PspPI	GGNCC	1 cut(s)	449
PsrI	GAACNNNNNNTAC	2 cut(s)	890, 922
PstNI	CAGNNNCTG	1 cut(s)	734
PsuI	RGATCY	3 cut(s)	652, 679, 784
PvuII	CAGCTG	3 cut(s)	287, 1078, 1178
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	159, 894
SatI	GCNGC	3 cut(s)	1076, 1122, 1272
Sau3AI	GATC	7 cut(s)	39, 403, 519, 652, 679, 784, 1047
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	2 cut(s)	1169, 1214
SduI	GDGCHC	2 cut(s)	16, 884
SfaNI	GCATC	7 cut(s)	447, 577, 609, 1099, 1177, 1198, 1216
SfcI	CTRYAG	3 cut(s)	595, 640, 1289
SfuI	TTCGAA	2 cut(s)	84, 96
SpeI	ACTAGT	1 cut(s)	322
SphI	GCATGC	1 cut(s)	488
SsiI	CCGC	3 cut(s)	69, 580, 1136
SspMI	CTAG	5 cut(s)	9, 24, 188, 323, 1241
StyI	CCWWGG	3 cut(s)	72, 771, 1164
TaaI	ACNGT	3 cut(s)	365, 644, 1290
TaqI	TCGA	3 cut(s)	16, 84, 96
TfiI	GAWTC	2 cut(s)	1181, 1232
Tru1I	TTAA	2 cut(s)	159, 894
Tru9I	TTAA	2 cut(s)	159, 894
TscAI	CASTG	5 cut(s)	262, 397, 649, 958, 1057
TseI	GCWGC	3 cut(s)	1075, 1121, 1271
TspDTI	ATGAA	3 cut(s)	363, 712, 1215
TspGWI	ACGGA	1 cut(s)	519
TspRI	CASTG	5 cut(s)	262, 397, 649, 958, 1057
XapI	RAATTY	4 cut(s)	92, 299, 719, 947
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	5 cut(s)	9, 24, 188, 323, 1241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.