Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032731.1

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1605

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032731.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcgtctagggctcgacatcctagcttggcgtccttgatccttctctctctcctcgccgtcgcctccgccaaggtcttcttcgaagagaaattcgaagatggatgggagaaacattgggttaaatctgactggaagaaagatgagaacctagctggggaatggaactacacctctggcaaatggaacggcgacgctaatgacaaaggtatccaaaccagtgaggactaccggttctatgccatatcagctgagttccctgaattcagcaacaaggacaaaacactagtgttccagttttctgtgaagcatgaacagaaacttgactgtggcggtggctatatcaaattgctcagtggtgatgtagatcagaagaagtttggtggggataccccatacagcatcatgttcgggccagatatctgtggatacagcaccaagaaagtgcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

150

Amino Acids

17.0

Weight (kDa)

6.08

Isoelectric Point (pI)

20.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 333
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	92, 263
AcyI	GRCGYC	2 cut(s)	5, 32
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgeI	ACCGGT	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	27, 155, 251
AluI	AGCT	3 cut(s)	27, 155, 251
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	413
ApoI	RAATTY	2 cut(s)	92, 263
AsiGI	ACCGGT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	371
AsuII	TTCGAA	2 cut(s)	84, 96
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	70
BccI	CCATC	2 cut(s)	95, 99
BceAI	ACGGC	2 cut(s)	44, 205
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciVI	GTATCC	3 cut(s)	221, 382, 422
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	4 cut(s)	9, 24, 152, 287
BfuI	GTATCC	3 cut(s)	221, 382, 422
BmgT120I	GGNCC	1 cut(s)	413
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	70
Bpu14I	TTCGAA	2 cut(s)	84, 96
BsaBI	GATNNNNATC	1 cut(s)	366
BsaHI	GRCGYC	2 cut(s)	5, 32
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	3 cut(s)	137, 219, 295
Bse8I	GATNNNNATC	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	19, 110
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	243, 367
BseNI	ACTGG	3 cut(s)	137, 219, 295
BseRI	GAGGAG	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	157
BsnI	GGCC	1 cut(s)	415
Bsp119I	TTCGAA	2 cut(s)	84, 96
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	39, 367
BspACI	CCGC	2 cut(s)	69, 333
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	244, 366
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	2 cut(s)	84, 96
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	3 cut(s)	137, 219, 295
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	39, 367
BssNI	GRCGYC	2 cut(s)	5, 32
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	5, 32
BstBI	TTCGAA	2 cut(s)	84, 96
BstDEI	CTNAG	2 cut(s)	252, 353
BstF5I	GGATG	2 cut(s)	19, 110
BstKTI	GATC	2 cut(s)	42, 370
BstMBI	GATC	2 cut(s)	39, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 248
BstV2I	GAAGAC	1 cut(s)	70
BsuI	GTATCC	3 cut(s)	221, 382, 422
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	2 cut(s)	19, 110
BtsIMutI	CAGTG	2 cut(s)	226, 361
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	2 cut(s)	21, 203
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	2 cut(s)	311, 406
CviJI	RGCY	6 cut(s)	14, 27, 155, 251, 339, 415
CviKI_1	RGCY	6 cut(s)	14, 27, 155, 251, 339, 415
DdeI	CTNAG	2 cut(s)	252, 353
DpnI	GATC	2 cut(s)	41, 369
DpnII	GATC	2 cut(s)	39, 367
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	16
Eco32I	GATATC	1 cut(s)	421
EcoRI	GAATTC	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	2 cut(s)	314, 409
FaiI	YATR	6 cut(s)	240, 245, 312, 342, 397, 407
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	2 cut(s)	310, 405
FokI	GGATG	2 cut(s)	6, 117
FriOI	GRGCYC	1 cut(s)	16
FspBI	CTAG	4 cut(s)	9, 24, 152, 287
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	2 cut(s)	21, 203
Hin1I	GRCGYC	2 cut(s)	5, 32
Hin1II	CATG	2 cut(s)	314, 409
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	130, 372
Hpy99I	CGWCG	2 cut(s)	65, 197
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 248
HpyF3I	CTNAG	2 cut(s)	252, 353
Hsp92I	GRCGYC	2 cut(s)	5, 32
Hsp92II	CATG	2 cut(s)	314, 409
Kzo9I	GATC	2 cut(s)	39, 367
LpnPI	CCDG	8 cut(s)	118, 141, 162, 232, 245, 273, 308, 429
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	4 cut(s)	9, 24, 152, 287
MalI	GATC	2 cut(s)	41, 369
MboI	GATC	2 cut(s)	39, 367
MboII	GAAGA	6 cut(s)	70, 73, 98, 110, 148, 385
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	92, 263, 347
MnlI	CCTC	4 cut(s)	65, 76, 184, 217
MseI	TTAA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	11, 248
NdeII	GATC	2 cut(s)	39, 367
NlaIII	CATG	2 cut(s)	314, 409
NspV	TTCGAA	2 cut(s)	84, 96
PinAI	ACCGGT	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	2 cut(s)	39, 367
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	7 cut(s)	29, 78, 153, 157, 176, 211, 253
SfaNI	GCATC	1 cut(s)	411
SfuI	TTCGAA	2 cut(s)	84, 96
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	3 cut(s)	92, 263, 347
SsiI	CCGC	2 cut(s)	69, 333
SspMI	CTAG	4 cut(s)	9, 24, 152, 287
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	16, 84, 96
TasI	AATT	3 cut(s)	92, 263, 347
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	2 cut(s)	226, 361
TspDTI	ATGAA	1 cut(s)	327
TspRI	CASTG	2 cut(s)	226, 361
XapI	RAATTY	2 cut(s)	92, 263
XspI	CTAG	4 cut(s)	9, 24, 152, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.