Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Reverse (-)

6185705 .. 6190077

Gene Structure 4373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG079600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGTCTAGGGCTCGACATCCTAGCTTGGCGTCCTTGATCCTTCTCTCTCTCCTCGCCGTCGCCTCCGCCAAGGTCTTCTTCGAAGAGAAATTCGAAGATGGATGGGAGAAACATTGGGTTAAATCTGACTGGAAGAAAGATGAGAACCTAGCTGGGGAATGGAACTACACCTCTGGCAAATGGAACGGCAACGCTAATGACAAAGGTATCCAAACCAGTGAGGACTACCGGTTCTATGCCATATCAGCTGAGTTCCCTGAATTCAGCAACAAGGATAAAACACTAGTGTTCCAGTTTTCTGTGAAGCATGAACAGAAACTTGACTGTGGCGGTGGCTATATCAAATTGCTCAGTGGTGATGTAGATCAGAAGAAGTTTGGTGGGGATACCCCATACAGCATCATGTTCGGGCCAGATATCTGTGGATACAGCACCAAGAAAGTGCATGCAATTCTCCACTACAACGATACAAATAAATTGATCAAGAAGGATGTACCTTGTGAGACTGACCAGCTCACTCATGTCTATACCTTTATCATCCGCCCAGATGCTACCTACAGCATCCTTATTGACAATGTAGAGAAGCAGACTGGTAGCCTCTACAGTGATTGGGATCTTCTTCCTCCAAAGAAAATCAAGGATCCCGAAGCCAAGAAGCCTGAAGATTGGGACGACAAGGAATTCATCCCAGACCCTGAAGACAAGAAGCCAGAGGTAGTCTCCCAGTATAATAAGTTTAGTACTTTTTTATGGCTTATATGTGGTGAATATAACAGCCATACTGATTCTTGTTGTCTATTTTGTAGGGATATGATGACATTCCCAAGGAAATCTCAGATCCCGAAGCCAAGAAGCCCGAAGATTGGGATGATGAGGAAGATGGTGAATGGACAGCCCCAACCATCCCCAACCCTGAATACAAGGGTGAATGGAGCCCAAAGAAAATTAAGAACCCCAACTACAAGGGAAAGTGGAAGGCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

329

Amino Acids

37.79

Weight (kDa)

8.3

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Calreticulin	PF00262	28 - 239	1.9e-52	Calreticulin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	981
AciI	CCGC	3 cut(s)	69, 333, 544
AclWI	GGATC	5 cut(s)	34, 624, 638, 651, 835
AcsI	RAATTY	3 cut(s)	92, 263, 683
AcuI	CTGAAG	2 cut(s)	684, 720
AcyI	GRCGYC	2 cut(s)	5, 32
AfaI	GTAC	2 cut(s)	498, 745
AfiI	CCNNNNNNNGG	2 cut(s)	157, 866
AgeI	ACCGGT	1 cut(s)	231
AhlI	ACTAGT	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	27, 155, 251, 517
AluI	AGCT	4 cut(s)	27, 155, 251, 517
Alw26I	GTCTC	2 cut(s)	500, 727
AlwI	GGATC	5 cut(s)	34, 624, 638, 651, 835
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	413
ApoI	RAATTY	3 cut(s)	92, 263, 683
AsiGI	ACCGGT	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	4 cut(s)	371, 779, 898, 940
AsuII	TTCGAA	2 cut(s)	84, 96
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	981
BanII	GRGCYC	2 cut(s)	16, 940
BbsI	GAAGAC	2 cut(s)	70, 708
BccI	CCATC	4 cut(s)	95, 99, 877, 913
BceAI	ACGGC	2 cut(s)	44, 205
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciVI	GTATCC	3 cut(s)	221, 382, 422
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	2 cut(s)	500, 727
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	4 cut(s)	9, 24, 152, 287
BfmI	CTRYAG	2 cut(s)	559, 604
BfuI	GTATCC	3 cut(s)	221, 382, 422
BmcAI	AGTACT	1 cut(s)	745
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	645, 937, 983
BmrI	ACTGGG	1 cut(s)	721
BmsI	GCATC	3 cut(s)	411, 541, 573
BmuI	ACTGGG	1 cut(s)	721
BpiI	GAAGAC	2 cut(s)	70, 708
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
Bpu14I	TTCGAA	2 cut(s)	84, 96
BsaBI	GATNNNNATC	2 cut(s)	366, 615
BsaHI	GRCGYC	2 cut(s)	5, 32
BsaJI	CCNNGG	2 cut(s)	72, 827
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 866
Bse118I	RCCGGY	1 cut(s)	231
Bse1I	ACTGG	5 cut(s)	137, 219, 295, 598, 727
Bse8I	GATNNNNATC	2 cut(s)	366, 615
BseDI	CCNNGG	2 cut(s)	72, 827
BseGI	GGATG	8 cut(s)	19, 110, 499, 540, 564, 687, 876, 905
BseJI	GATNNNNATC	2 cut(s)	366, 615
BseLI	CCNNNNNNNGG	2 cut(s)	157, 866
BseMII	CTCAG	3 cut(s)	243, 367, 851
BseNI	ACTGG	5 cut(s)	137, 219, 295, 598, 727
BseRI	GAGGAG	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	981
BshTI	ACCGGT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	686
BslI	CCNNNNNNNGG	2 cut(s)	157, 866
BsmAI	GTCTC	2 cut(s)	500, 727
BsmFI	GGGAC	1 cut(s)	686
BsnI	GGCC	1 cut(s)	415
Bsp119I	TTCGAA	2 cut(s)	84, 96
Bsp1286I	GDGCHC	2 cut(s)	16, 940
Bsp143I	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
BspACI	CCGC	3 cut(s)	69, 333, 544
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	3 cut(s)	244, 366, 850
BspLI	GGNNCC	3 cut(s)	645, 937, 983
BspPI	GGATC	5 cut(s)	34, 624, 638, 651, 835
BspT104I	TTCGAA	2 cut(s)	84, 96
BspT107I	GGYRCC	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	231
BsrI	ACTGG	5 cut(s)	137, 219, 295, 598, 727
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	72, 827
BssMI	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
BssNI	GRCGYC	2 cut(s)	5, 32
BssT1I	CCWWGG	2 cut(s)	72, 827
Bst4CI	ACNGT	2 cut(s)	329, 608
Bst6I	CTCTTC	1 cut(s)	81
BstACI	GRCGYC	2 cut(s)	5, 32
BstBI	TTCGAA	2 cut(s)	84, 96
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	3 cut(s)	252, 353, 837
BstF5I	GGATG	8 cut(s)	19, 110, 499, 540, 564, 687, 876, 905
BstKTI	GATC	6 cut(s)	42, 370, 486, 619, 646, 843
BstMAI	GTCTC	2 cut(s)	500, 727
BstMBI	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 248
BstNSI	RCATGY	1 cut(s)	452
BstSFI	CTRYAG	2 cut(s)	559, 604
BstV2I	GAAGAC	2 cut(s)	70, 708
BstX2I	RGATCY	3 cut(s)	616, 643, 840
BstYI	RGATCY	3 cut(s)	616, 643, 840
BsuI	GTATCC	3 cut(s)	221, 382, 422
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	8 cut(s)	19, 110, 499, 540, 564, 687, 876, 905
BtsIMutI	CAGTG	3 cut(s)	226, 361, 613
Cac8I	GCNNGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	698
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	497, 744
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	4 cut(s)	311, 406, 449, 524
CviQI	GTAC	2 cut(s)	497, 744
DdeI	CTNAG	3 cut(s)	252, 353, 837
DpnI	GATC	6 cut(s)	41, 369, 485, 618, 645, 842
DpnII	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
EciI	GGCGGA	2 cut(s)	58, 533
Eco130I	CCWWGG	2 cut(s)	72, 827
Eco24I	GRGCYC	2 cut(s)	16, 940
Eco32I	GATATC	1 cut(s)	421
Eco57I	CTGAAG	2 cut(s)	684, 720
EcoRI	GAATTC	2 cut(s)	263, 683
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	72, 827
EcoT38I	GRGCYC	2 cut(s)	16, 940
ErhI	CCWWGG	2 cut(s)	72, 827
FaeI	CATG	4 cut(s)	314, 409, 452, 527
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	686
FatI	CATG	4 cut(s)	310, 405, 448, 523
FbaI	TGATCA	1 cut(s)	483
FokI	GGATG	8 cut(s)	6, 117, 506, 527, 551, 674, 883, 892
FriOI	GRGCYC	2 cut(s)	16, 940
FspBI	CTAG	4 cut(s)	9, 24, 152, 287
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	21
Hin1I	GRCGYC	2 cut(s)	5, 32
Hin1II	CATG	4 cut(s)	314, 409, 452, 527
HinfI	GANTC	1 cut(s)	788
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	4 cut(s)	371, 779, 898, 940
Hpy188I	TCNGA	3 cut(s)	130, 372, 840
Hpy188III	TCNNGA	3 cut(s)	487, 647, 844
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	3 cut(s)	53, 484, 972
HpyCH4III	ACNGT	2 cut(s)	329, 608
HpyCH4V	TGCA	2 cut(s)	448, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 248
HpyF3I	CTNAG	3 cut(s)	252, 353, 837
Hsp92I	GRCGYC	2 cut(s)	5, 32
Hsp92II	CATG	4 cut(s)	314, 409, 452, 527
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
LmnI	GCTCC	1 cut(s)	935
LweI	GCATC	3 cut(s)	411, 541, 573
MaeI	CTAG	4 cut(s)	9, 24, 152, 287
MalI	GATC	6 cut(s)	41, 369, 485, 618, 645, 842
MboI	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
MflI	RGATCY	3 cut(s)	616, 643, 840
MhlI	GDGCHC	2 cut(s)	16, 940
MluCI	AATT	7 cut(s)	92, 263, 347, 453, 479, 683, 947
MnlI	CCTC	8 cut(s)	65, 76, 184, 217, 611, 636, 709, 870
MseI	TTAA	2 cut(s)	123, 950
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	11, 248
NdeII	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
NlaIII	CATG	4 cut(s)	314, 409, 452, 527
NlaIV	GGNNCC	3 cut(s)	645, 937, 983
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	2 cut(s)	84, 96
PaeI	GCATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	788
PinAI	ACCGGT	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	155
PspN4I	GGNNCC	3 cut(s)	645, 937, 983
PspPI	GGNCC	1 cut(s)	413
PsrI	GAACNNNNNNTAC	2 cut(s)	946, 978
PstNI	CAGNNNCTG	1 cut(s)	698
PsuI	RGATCY	3 cut(s)	616, 643, 840
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	498, 745
RsaNI	GTAC	2 cut(s)	497, 744
SaqAI	TTAA	2 cut(s)	123, 950
Sau3AI	GATC	6 cut(s)	39, 367, 483, 616, 643, 840
Sau96I	GGNCC	1 cut(s)	413
ScaI	AGTACT	1 cut(s)	745
SduI	GDGCHC	2 cut(s)	16, 940
SfaNI	GCATC	3 cut(s)	411, 541, 573
SfcI	CTRYAG	2 cut(s)	559, 604
SfuI	TTCGAA	2 cut(s)	84, 96
SpeI	ACTAGT	1 cut(s)	286
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	7 cut(s)	92, 263, 347, 453, 479, 683, 947
SsiI	CCGC	3 cut(s)	69, 333, 544
SspMI	CTAG	4 cut(s)	9, 24, 152, 287
StyI	CCWWGG	2 cut(s)	72, 827
TaaI	ACNGT	2 cut(s)	329, 608
TaqI	TCGA	3 cut(s)	16, 84, 96
TasI	AATT	7 cut(s)	92, 263, 347, 453, 479, 683, 947
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	1 cut(s)	788
Tru1I	TTAA	2 cut(s)	123, 950
Tru9I	TTAA	2 cut(s)	123, 950
TscAI	CASTG	3 cut(s)	226, 361, 613
TspDTI	ATGAA	2 cut(s)	327, 676
TspRI	CASTG	3 cut(s)	226, 361, 613
XapI	RAATTY	3 cut(s)	92, 263, 683
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	4 cut(s)	9, 24, 152, 287
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.