Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009813

Physical Location & Seq

Genomic Coordinates Forward (+)

28056662 .. 28060256

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G313900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGTTTAGGGTTCCAAACTCTAGCTTGCTGTCCCTGATCCTCCTCTCTCTCCTAGCTATCGCCTCCGCCAAGGTCTTCTTCGAAGAACGCTTCGAGGACGGATGGGATAAACGTTGGGTTACTTCCGAGTGGAAGAAAGAGGAGAACCTGGCTGGTGAATGGAACTACACCTCTGGAAAATGGAATGGAGACCCTAATGACAAAGGTATCCAAACAAGTGAGGACTACAGGTTCTATGCCATATCAGCTGAGTTCCCTGAATTCAGCAACAAGGATAAGACACTCGTGTTTCAATTTTCTGTGAAGCATGAGCAGAAACTTGACTGTGGTGGTGGCTACATCAAGCTACTCAGTGGTGATGTTGATCAGAAGAAATTTGGCGGTGATACCCCATACAGTATCATGTTTGGGCCAGATATCTGCGGATACAGCACCAAGAAAGTGCATGCAATTCTTAACTACAATAATACAAATAACTTGATCAAGAAGGATGTTCCTTGTGAGACTGACCAACTCACTCATGTCTATACTTTTATCATCCGTCCAGATGCTACCTACACCATCCTTATTGACAATGCTGAGAAACAAACTGGTAGCCTCTACAGCGATTGGGATCTTCTGCCTGCAAAGAAAATCAAGGATCCCGAGGCCAAGAAACCTGAAGATTGGGAAGACCAAGAATACATCCCTGACCCTGAAGATAAGAAGCCAGAGGGGTATGATGACATTCCCAAGGAAATAGCCGATTCCGATGCCAAGAAGCCTGAAGACTGGGATGATGAGGAAGATGGTGAATGGACTGCCCCAACCATTCCCAACCCTGAGTACAAGGGTGAATGGAAGCCAAAGAAAATCAAGAACCCCAACTTCAAGGGAAAGTGGAAGGCACCATTGATTGACAACCCAGAATTCAAGGATGACCCTGAGCTGTATGTTTACCCCAACTTGAAGTACGTCGGAATCGAATTGTGGCAGGTGAAATCTGGAACCCTGTTTGACAACATTTTGATCACTGATGAGCCGGAGTATGCAAAGCAGTTGGCTGAGGAAACATGGGGCAAACAGAAAGATGCCGAGAAGGCAGCATTCGAGGAGCTGGAGAAGAAGCTGCAGGAGGAGGAATCAAAAGAAGACCCAGTTGATTCTGATGCCGAGGACGATGATGCTGACGCCGAAGATGGAGAAGAATCTGATTCCGAATCGAAACCAGACTCAACTGAAGAGAGTGCCGAAACTGAGGCTGAGAAACATGATGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0030054 GO:0031090 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0070013 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04145 ko04612 ko05142 ko05166 map04141 map04145 map04612 map05142 map05166

Pfam Domains

Protein Families

Calreticulin

Protein Analysis

422

Amino Acids

48.3

Weight (kDa)

4.4

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09210 AT1G56340 AT1G56340
fragaria_vesca	FvH4_6g07360
malus_domestica	MD04G1194200.v1.1 MD12G1206700.v1.1
prunus_persica	Prupe.6G313900_v2.0.a1
pyrus_communis	pycom04g17170 pycom12g19460
rosa_chinensis	RchiOBHm_Chr3g0456961
rosa_laevigata	RLG00000025259
rosa_multiflora	Rmu_sc0016008.1_g000004 Rmu_sc0032731.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422330
rosa_rugosa	Rorug03G0017700 Rorug03G0017800
rosa_samantha	Rh3AG077700 Rh3BG079600 Rh3CG079500 Rh3DG081300
rosa_wichuraiana	Rw3G006660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	967
Acc36I	ACCTGC	1 cut(s)	967
AccB1I	GGYRCC	1 cut(s)	889
AciI	CCGC	3 cut(s)	69, 384, 426
AclI	AACGTT	1 cut(s)	115
AclWI	GGATC	4 cut(s)	34, 624, 638, 651
AcsI	RAATTY	3 cut(s)	263, 377, 911
AcuI	CTGAAG	4 cut(s)	684, 720, 789, 1242
AcyI	GRCGYC	1 cut(s)	1173
AfaI	GTAC	2 cut(s)	830, 956
AgsI	TTSAA	4 cut(s)	296, 874, 916, 952
AjnI	CCWGG	1 cut(s)	150
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AloI	GAACNNNNNNTCC	2 cut(s)	218, 250
AluBI	AGCT	7 cut(s)	27, 59, 251, 349, 931, 1099, 1111
AluI	AGCT	7 cut(s)	27, 59, 251, 349, 931, 1099, 1111
Alw26I	GTCTC	2 cut(s)	186, 500
AlwI	GGATC	4 cut(s)	34, 624, 638, 651
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	413, 651
ApeKI	GCWGC	2 cut(s)	1085, 1111
ApoI	RAATTY	3 cut(s)	263, 377, 911
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	6 cut(s)	170, 371, 398, 806, 848, 991
AsuII	TTCGAA	1 cut(s)	84
AvaI	CYCGRG	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BamHI	GGATCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	287
BbsI	GAAGAC	4 cut(s)	70, 681, 777, 1140
BbvCI	CCTCAGC	1 cut(s)	1047
BbvI	GCAGC	2 cut(s)	1097, 1098
BccI	CCATC	4 cut(s)	99, 572, 785, 1175
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	1 cut(s)	152
BciVI	GTATCC	2 cut(s)	221, 422
BclI	TGATCA	3 cut(s)	367, 483, 1011
BcoDI	GTCTC	2 cut(s)	186, 500
BfaI	CTAG	2 cut(s)	24, 56
BfmI	CTRYAG	4 cut(s)	229, 604, 1112, 1262
BfuAI	ACCTGC	1 cut(s)	967
BfuI	GTATCC	2 cut(s)	221, 422
BglI	GCCNNNNNGGC	1 cut(s)	1082
BisI	GCNGC	2 cut(s)	1086, 1112
BlsI	GCNGC	2 cut(s)	1087, 1113
Bme1390I	CCNGG	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	4 cut(s)	15, 645, 891, 991
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	2 cut(s)	784, 1133
BmsI	GCATC	5 cut(s)	541, 745, 1063, 1141, 1156
BmuI	ACTGGG	2 cut(s)	784, 1133
BpiI	GAAGAC	4 cut(s)	70, 681, 777, 1140
BpmI	CTGGAG	1 cut(s)	1121
Bpu10I	CCTNAGC	2 cut(s)	927, 1047
Bpu14I	TTCGAA	1 cut(s)	84
BsaBI	GATNNNNATC	2 cut(s)	366, 615
BsaHI	GRCGYC	1 cut(s)	1173
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	4 cut(s)	72, 648, 735, 1155
Bse1I	ACTGG	3 cut(s)	598, 779, 1139
Bse8I	GATNNNNATC	2 cut(s)	366, 615
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	4 cut(s)	72, 648, 735, 1155
BseGI	GGATG	7 cut(s)	110, 499, 540, 564, 687, 784, 925
BseJI	GATNNNNATC	2 cut(s)	366, 615
BseMII	CTCAG	8 cut(s)	243, 367, 573, 816, 918, 1038, 1230, 1236
BseNI	ACTGG	3 cut(s)	598, 779, 1139
BseRI	GAGGAG	4 cut(s)	35, 158, 1109, 1133
BseXI	GCAGC	2 cut(s)	1097, 1098
BshFI	GGCC	2 cut(s)	415, 653
BshNI	GGYRCC	1 cut(s)	889
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	186, 500
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	1088
BsnI	GGCC	2 cut(s)	415, 653
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	647
Bsp119I	TTCGAA	1 cut(s)	84
Bsp143I	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
BspACI	CCGC	3 cut(s)	69, 384, 426
BspANI	GGCC	2 cut(s)	415, 653
BspCNI	CTCAG	8 cut(s)	244, 366, 574, 817, 919, 1039, 1231, 1237
BspLI	GGNNCC	4 cut(s)	15, 645, 891, 991
BspMAI	CTGCAG	1 cut(s)	1116
BspMI	ACCTGC	1 cut(s)	967
BspPI	GGATC	4 cut(s)	34, 624, 638, 651
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	889
BspTNI	GGTCTC	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	598, 779, 1139
BssECI	CCNNGG	4 cut(s)	72, 648, 735, 1155
BssMI	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
BssNI	GRCGYC	1 cut(s)	1173
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	72, 735
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	329, 401, 1263
Bst6I	CTCTTC	1 cut(s)	1218
BstACI	GRCGYC	1 cut(s)	1173
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	29, 450, 627
BstDEI	CTNAG	8 cut(s)	252, 353, 582, 825, 927, 1047, 1239, 1245
BstF5I	GGATG	7 cut(s)	110, 499, 540, 564, 687, 784, 925
BstKTI	GATC	6 cut(s)	42, 370, 486, 619, 646, 1014
BstMAI	GTCTC	2 cut(s)	186, 500
BstMBI	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 432, 606, 1082
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	4 cut(s)	229, 604, 1112, 1262
BstV1I	GCAGC	2 cut(s)	1097, 1098
BstV2I	GAAGAC	4 cut(s)	70, 681, 777, 1140
BstX2I	RGATCY	2 cut(s)	616, 643
BstYI	RGATCY	2 cut(s)	616, 643
BsuI	GTATCC	2 cut(s)	221, 422
BsuRI	GGCC	2 cut(s)	415, 653
BtsCI	GGATG	7 cut(s)	110, 499, 540, 564, 687, 784, 925
BtsIMutI	CAGTG	2 cut(s)	361, 1014
BveI	ACCTGC	1 cut(s)	967
Cac8I	GCNNGC	3 cut(s)	29, 450, 627
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	1181
Csp6I	GTAC	2 cut(s)	829, 955
CviAII	CATG	6 cut(s)	311, 406, 449, 524, 1056, 1253
CviQI	GTAC	2 cut(s)	829, 955
DdeI	CTNAG	8 cut(s)	252, 353, 582, 825, 927, 1047, 1239, 1245
DpnI	GATC	6 cut(s)	41, 369, 485, 618, 645, 1013
DpnII	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
Eam1104I	CTCTTC	1 cut(s)	1218
EarI	CTCTTC	1 cut(s)	1218
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	72, 735
Eco31I	GGTCTC	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	421
Eco57I	CTGAAG	4 cut(s)	684, 720, 789, 1242
Eco88I	CYCGRG	1 cut(s)	647
EcoRI	GAATTC	2 cut(s)	263, 911
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	72, 735
ErhI	CCWWGG	2 cut(s)	72, 735
FaeI	CATG	6 cut(s)	314, 409, 452, 527, 1059, 1256
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	6 cut(s)	310, 405, 448, 523, 1055, 1252
FbaI	TGATCA	3 cut(s)	367, 483, 1011
Fnu4HI	GCNGC	2 cut(s)	1086, 1112
FokI	GGATG	7 cut(s)	117, 506, 527, 551, 674, 791, 932
Fsp4HI	GCNGC	2 cut(s)	1086, 1112
FspBI	CTAG	2 cut(s)	24, 56
GluI	GCNGC	2 cut(s)	1086, 1112
GsuI	CTGGAG	1 cut(s)	1121
HaeIII	GGCC	2 cut(s)	415, 653
HapII	CCGG	1 cut(s)	1025
HgaI	GACGC	1 cut(s)	1181
Hin1I	GRCGYC	1 cut(s)	1173
Hin1II	CATG	6 cut(s)	314, 409, 452, 527, 1059, 1256
HinfI	GANTC	8 cut(s)	749, 963, 1124, 1145, 1190, 1196, 1202, 1214
HpaII	CCGG	1 cut(s)	1025
HphI	GGTGA	6 cut(s)	170, 371, 398, 806, 848, 991
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188I	TCNGA	7 cut(s)	130, 372, 754, 962, 1150, 1195, 1201
Hpy188III	TCNNGA	6 cut(s)	177, 487, 548, 647, 859, 987
Hpy8I	GTNNAC	1 cut(s)	940
Hpy99I	CGWCG	1 cut(s)	962
HpyAV	CCTTC	3 cut(s)	484, 880, 1075
HpyCH4III	ACNGT	3 cut(s)	329, 401, 1263
HpyCH4IV	ACGT	2 cut(s)	115, 957
HpyCH4V	TGCA	5 cut(s)	448, 452, 629, 1034, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 432, 606, 1082
HpyF3I	CTNAG	8 cut(s)	252, 353, 582, 825, 927, 1047, 1239, 1245
HpySE526I	ACGT	2 cut(s)	115, 957
Hsp92I	GRCGYC	1 cut(s)	1173
Hsp92II	CATG	6 cut(s)	314, 409, 452, 527, 1059, 1256
Ksp22I	TGATCA	3 cut(s)	367, 483, 1011
Kzo9I	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
LmnI	GCTCC	1 cut(s)	1096
Lsp1109I	GCAGC	2 cut(s)	1097, 1098
LweI	GCATC	5 cut(s)	541, 745, 1063, 1141, 1156
MaeI	CTAG	2 cut(s)	24, 56
MaeII	ACGT	2 cut(s)	115, 957
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	6 cut(s)	41, 369, 485, 618, 645, 1013
MboI	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
MflI	RGATCY	2 cut(s)	616, 643
MluCI	AATT	6 cut(s)	263, 296, 377, 453, 911, 968
MlyI	GAGTC	1 cut(s)	1208
MmeI	TCCRAC	1 cut(s)	940
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	1025
MspR9I	CCNGG	1 cut(s)	152
Mva1269I	GAATGC	1 cut(s)	1088
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	4 cut(s)	248, 432, 606, 1082
NdeII	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
NlaIII	CATG	6 cut(s)	314, 409, 452, 527, 1059, 1256
NlaIV	GGNNCC	4 cut(s)	15, 645, 891, 991
NmeAIII	GCCGAG	2 cut(s)	1102, 1180
NspI	RCATGY	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	84
PaeI	GCATGC	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	967
PcsI	WCGNNNNNNNCGW	1 cut(s)	963
PctI	GAATGC	1 cut(s)	1088
PfeI	GAWTC	7 cut(s)	749, 963, 1124, 1145, 1190, 1196, 1202
PkrI	GCNGC	2 cut(s)	1087, 1113
PleI	GAGTC	1 cut(s)	1208
PpsI	GAGTC	1 cut(s)	1208
Psp1406I	AACGTT	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	15, 645, 891, 991
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	1116
PsuI	RGATCY	2 cut(s)	616, 643
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	830, 956
RsaNI	GTAC	2 cut(s)	829, 955
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	1086, 1112
Sau3AI	GATC	6 cut(s)	39, 367, 483, 616, 643, 1011
Sau96I	GGNCC	1 cut(s)	413
SchI	GAGTC	1 cut(s)	1208
ScrFI	CCNGG	1 cut(s)	152
SfaNI	GCATC	5 cut(s)	541, 745, 1063, 1141, 1156
SfcI	CTRYAG	4 cut(s)	229, 604, 1112, 1262
SfuI	TTCGAA	1 cut(s)	84
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	6 cut(s)	263, 296, 377, 453, 911, 968
SsiI	CCGC	3 cut(s)	69, 384, 426
SspMI	CTAG	2 cut(s)	24, 56
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	72, 735
TaaI	ACNGT	3 cut(s)	329, 401, 1263
TaiI	ACGT	2 cut(s)	118, 960
TaqI	TCGA	5 cut(s)	84, 96, 966, 1092, 1205
TasI	AATT	6 cut(s)	263, 296, 377, 453, 911, 968
TatI	WGTACW	1 cut(s)	828
TfiI	GAWTC	7 cut(s)	749, 963, 1124, 1145, 1190, 1196, 1202
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	2 cut(s)	361, 1021
TseI	GCWGC	2 cut(s)	1085, 1111
TspGWI	ACGGA	2 cut(s)	117, 533
TspRI	CASTG	2 cut(s)	361, 1021
XapI	RAATTY	3 cut(s)	263, 377, 911
XceI	RCATGY	1 cut(s)	452
XspI	CTAG	2 cut(s)	24, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.