Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Reverse (-)

3026062 .. 3029549

Gene Structure 3488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTAAATCAGATATGTTGCCGTTCTTGGCGATGGTGTTGGTGCAAATCGGCTACGCAGGCATGAACATTACGTCGAAGATGGCTATGGAGGCCGGTATGAAGCCACTCATCCTGGTCGCTTATCGTCAGATATTTGCCACTATCGCCACTTTTCCGGTCGCATTTTTTCTCGAACGGAAGACAAGACCGAAGATCACACTTAGGATTCTTGTCCAAGTCTTCTTCTGCTCCATTACTGGTGCGACTGGAAACCAAGTGCTATATTTCGTAGGACTTCAGAATTCATCTCCGACCATTGCTTGTGCCTTAACTAATCTCTTACCAGCGGTCACTTTCCTCCTCGCCGCAATATTCAGACAAGAAACCGTGGGGATCAAGAAGGCATCAGGACAAGCCAAAGTGATAGGGACGCTAGTATGTGTGATCGGAGCCATGGTTCTCTCCTTCTACCATGGTCACACCATCGGCATTGGAGAATCCAAGATCCATTGGGCCTACGCTGAAAACATCACGAAACATGGTTCCAGTTCTGGCCATTCTAATTTCTTCTTGGGACCTTTTCTTATTATGGCTGCTGCCGTTTCTTGGGCCGCTTGGTTCATTATCCAGACGAAGATGAGTGAAACATTTGCAGCACCGTACACGAGCACACTACTAATGTGTTTGATGGGAAGTATCCAATGTGGAGCCATTGCTTTGATCTCCGATCATACAATCTCTGATTGGTCTCTCAGCTCTCCTCTCCGCTTCATATCCGCCCTTTATGCCGGAGTGGTGGCGTCTGCGTTAGCTTTCTGCCTAATGTCATGGGCTATGCAGAGGAAAGGTCCTCTGTACGTCTCTGTTTTCAGCCCTTTACTTCTCGTAGTTGTCGCCATTTTCAGCTGGGCTCTTCTTGAAGAGAAACTCTACACCGGCACGTTTATGGGATCAGCACTTGTGGTTATTGGTCTCTATGGCGTATTGTGGGGGAAAGACAGAGAGGTGAGTGAGAAGGAAGAAGAAAGGGAGAAGGTGAAACAACAAAACCATAAAGTCAAGAGTGAAAGTAATGAAGATATTGAATCGAGATTACCGGTAGCAAGTAGTGGAAATGGTTCCACAAGGTCTACATCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

374

Amino Acids

40.66

Weight (kDa)

9.14

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 149	4e-16	EamA-like transporter family
EamA	PF00892	185 - 323	2.1e-20	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1112
AciI	CCGC	5 cut(s)	329, 348, 594, 748, 759
AclWI	GGATC	3 cut(s)	383, 481, 940
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	782
AfaI	GTAC	2 cut(s)	644, 839
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgeI	ACCGGT	1 cut(s)	1078
AgsI	TTSAA	2 cut(s)	902, 1067
AjnI	CCWGG	1 cut(s)	114
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	3 cut(s)	738, 794, 888
AluI	AGCT	3 cut(s)	738, 794, 888
Alw21I	GWGCWC	1 cut(s)	653
Alw26I	GTCTC	3 cut(s)	735, 847, 959
AlwI	GGATC	3 cut(s)	383, 481, 940
AoxI	GGCC	4 cut(s)	93, 495, 535, 591
ApeKI	GCWGC	3 cut(s)	575, 578, 635
ApoI	RAATTY	1 cut(s)	283
AsiGI	ACCGGT	1 cut(s)	1078
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspS9I	GGNCC	4 cut(s)	495, 557, 591, 830
AsuHPI	GGTGA	2 cut(s)	1000, 1030
AvaII	GGWCC	2 cut(s)	557, 830
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	895
BauI	CACGAG	1 cut(s)	646
BbsI	GAAGAC	2 cut(s)	188, 214
Bbv12I	GWGCWC	1 cut(s)	653
BbvI	GCAGC	3 cut(s)	562, 565, 647
BccI	CCATC	4 cut(s)	28, 76, 473, 664
BceAI	ACGGC	2 cut(s)	7, 566
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	689
BcoDI	GTCTC	3 cut(s)	735, 847, 959
BfaI	CTAG	1 cut(s)	416
BfuI	GTATCC	1 cut(s)	689
BisI	GCNGC	5 cut(s)	348, 576, 579, 594, 636
BlsI	GCNGC	5 cut(s)	349, 577, 580, 595, 637
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	557, 830
BmgT120I	GGNCC	4 cut(s)	495, 557, 591, 830
BmiI	GGNNCC	5 cut(s)	433, 526, 558, 691, 1102
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	1 cut(s)	395
BpiI	GAAGAC	2 cut(s)	188, 214
BsaHI	GRCGYC	1 cut(s)	782
BsaI	GGTCTC	2 cut(s)	735, 959
BsaJI	CCNNGG	3 cut(s)	369, 435, 454
BsaWI	WCCGGW	2 cut(s)	157, 1078
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse118I	RCCGGY	3 cut(s)	95, 917, 1078
Bse1I	ACTGG	3 cut(s)	244, 253, 528
Bse3DI	GCAATG	2 cut(s)	297, 693
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	369, 435, 454
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	2 cut(s)	297, 693
BseMII	CTCAG	1 cut(s)	748
BseNI	ACTGG	3 cut(s)	244, 253, 528
BseRI	GAGGAG	2 cut(s)	332, 732
BseXI	GCAGC	3 cut(s)	562, 565, 647
BseYI	CCCAGC	1 cut(s)	888
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	4 cut(s)	95, 497, 537, 593
BshTI	ACCGGT	1 cut(s)	1078
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	653
BsiSI	CCGG	5 cut(s)	96, 158, 771, 918, 1079
BslFI	GGGAC	2 cut(s)	424, 570
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	3 cut(s)	735, 847, 959
BsmBI	CGTCTC	1 cut(s)	847
BsmFI	GGGAC	2 cut(s)	424, 570
BsnI	GGCC	4 cut(s)	95, 497, 537, 593
Bso31I	GGTCTC	2 cut(s)	735, 959
Bsp1286I	GDGCHC	2 cut(s)	653, 895
Bsp143I	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
Bsp19I	CCATGG	2 cut(s)	435, 454
BspACI	CCGC	5 cut(s)	329, 348, 594, 748, 759
BspANI	GGCC	4 cut(s)	95, 497, 537, 593
BspCNI	CTCAG	1 cut(s)	747
BspLI	GGNNCC	5 cut(s)	433, 526, 558, 691, 1102
BspPI	GGATC	3 cut(s)	383, 481, 940
BspQI	GCTCTTC	1 cut(s)	900
BspTNI	GGTCTC	2 cut(s)	735, 959
BsrDI	GCAATG	2 cut(s)	297, 693
BsrFI	RCCGGY	3 cut(s)	95, 917, 1078
BsrI	ACTGG	3 cut(s)	244, 253, 528
BssAI	RCCGGY	3 cut(s)	95, 917, 1078
BssECI	CCNNGG	3 cut(s)	369, 435, 454
BssMI	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
BssNI	GRCGYC	1 cut(s)	782
BssSI	CACGAG	1 cut(s)	646
BssT1I	CCWWGG	2 cut(s)	435, 454
Bst2BI	CACGAG	1 cut(s)	646
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	370, 642
Bst6I	CTCTTC	2 cut(s)	897, 900
BstACI	GRCGYC	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	203, 734
BstDSI	CCRYGG	3 cut(s)	369, 435, 454
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	7 cut(s)	198, 378, 429, 489, 705, 712, 935
BstMAI	GTCTC	3 cut(s)	735, 847, 959
BstMBI	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 92, 146, 767
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	562, 565, 647
BstV2I	GAAGAC	2 cut(s)	188, 214
BstX2I	RGATCY	1 cut(s)	486
BstYI	RGATCY	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	689
BsuRI	GGCC	4 cut(s)	95, 497, 537, 593
BtgI	CCRYGG	3 cut(s)	369, 435, 454
BtgZI	GCGATG	2 cut(s)	47, 1101
BtsCI	GGATG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	61
Cfr10I	RCCGGY	3 cut(s)	95, 917, 1078
Cfr13I	GGNCC	4 cut(s)	495, 557, 591, 830
CseI	GACGC	2 cut(s)	421, 771
Csp6I	GTAC	2 cut(s)	643, 838
CspAI	ACCGGT	1 cut(s)	1078
CviAII	CATG	5 cut(s)	64, 436, 455, 521, 810
CviQI	GTAC	2 cut(s)	643, 838
DdeI	CTNAG	2 cut(s)	203, 734
DpnI	GATC	7 cut(s)	197, 377, 428, 488, 704, 711, 934
DpnII	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
EaeI	YGGCCR	1 cut(s)	535
Eam1104I	CTCTTC	2 cut(s)	897, 900
EarI	CTCTTC	2 cut(s)	897, 900
EciI	GGCGGA	1 cut(s)	748
Eco130I	CCWWGG	2 cut(s)	435, 454
Eco24I	GRGCYC	1 cut(s)	895
Eco31I	GGTCTC	2 cut(s)	735, 959
Eco47I	GGWCC	2 cut(s)	557, 830
Eco57I	CTGAAG	1 cut(s)	263
EcoO109I	RGGNCCY	2 cut(s)	557, 830
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	435, 454
EcoT38I	GRGCYC	1 cut(s)	895
ErhI	CCWWGG	2 cut(s)	435, 454
Esp3I	CGTCTC	1 cut(s)	847
FaeI	CATG	5 cut(s)	67, 439, 458, 524, 813
FaqI	GGGAC	2 cut(s)	424, 570
FatI	CATG	5 cut(s)	63, 435, 454, 520, 809
FblI	GTMKAC	1 cut(s)	1112
Fnu4HI	GCNGC	5 cut(s)	348, 576, 579, 594, 636
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	5 cut(s)	348, 576, 579, 594, 636
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	5 cut(s)	348, 576, 579, 594, 636
GsaI	CCCAGC	1 cut(s)	892
HaeIII	GGCC	4 cut(s)	95, 497, 537, 593
HapII	CCGG	5 cut(s)	96, 158, 771, 918, 1079
HgaI	GACGC	2 cut(s)	421, 771
Hin1I	GRCGYC	1 cut(s)	782
Hin1II	CATG	5 cut(s)	67, 439, 458, 524, 813
HinfI	GANTC	3 cut(s)	208, 479, 1067
HpaII	CCGG	5 cut(s)	96, 158, 771, 918, 1079
HphI	GGTGA	2 cut(s)	1000, 1030
Hpy166II	GTNNAC	2 cut(s)	645, 1113
Hpy188I	TCNGA	8 cut(s)	13, 132, 282, 294, 359, 431, 709, 724
Hpy188III	TCNNGA	8 cut(s)	173, 379, 390, 514, 610, 899, 1042, 1071
Hpy8I	GTNNAC	2 cut(s)	645, 1113
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	4 cut(s)	376, 457, 991, 1009
HpyCH4III	ACNGT	2 cut(s)	370, 642
HpyCH4IV	ACGT	3 cut(s)	74, 840, 923
HpyCH4V	TGCA	3 cut(s)	46, 635, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 92, 146, 767
HpyF3I	CTNAG	2 cut(s)	203, 734
HpySE526I	ACGT	3 cut(s)	74, 840, 923
Hsp92I	GRCGYC	1 cut(s)	782
Hsp92II	CATG	5 cut(s)	67, 439, 458, 524, 813
Kzo9I	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
LguI	GCTCTTC	1 cut(s)	900
LmnI	GCTCC	3 cut(s)	236, 431, 689
Lsp1109I	GCAGC	3 cut(s)	562, 565, 647
LweI	GCATC	1 cut(s)	395
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	3 cut(s)	74, 840, 923
MaeIII	GTNAC	2 cut(s)	331, 458
MalI	GATC	7 cut(s)	197, 377, 428, 488, 704, 711, 934
MboI	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	2 cut(s)	653, 895
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	2 cut(s)	283, 544
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	85, 350, 353, 753, 816, 843, 979
Mox20I	TGGCCA	1 cut(s)	537
MroXI	GAANNNNTTC	1 cut(s)	1099
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	2 cut(s)	311, 1123
MslI	CAYNNNNRTG	1 cut(s)	926
Msp20I	TGGCCA	1 cut(s)	537
MspA1I	CMGCKG	2 cut(s)	329, 888
MspI	CCGG	5 cut(s)	96, 158, 771, 918, 1079
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	60, 92, 146, 767
NcoI	CCATGG	2 cut(s)	435, 454
NdeII	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
NlaIII	CATG	5 cut(s)	67, 439, 458, 524, 813
NlaIV	GGNNCC	5 cut(s)	433, 526, 558, 691, 1102
NmuCI	GTSAC	2 cut(s)	331, 458
PciSI	GCTCTTC	1 cut(s)	900
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	3 cut(s)	208, 479, 1067
PinAI	ACCGGT	1 cut(s)	1078
PkrI	GCNGC	5 cut(s)	349, 577, 580, 595, 637
PpuMI	RGGWCCY	2 cut(s)	557, 830
Psp5II	RGGWCCY	2 cut(s)	557, 830
Psp6I	CCWGG	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	5 cut(s)	433, 526, 558, 691, 1102
PspPI	GGNCC	4 cut(s)	495, 557, 591, 830
PspPPI	RGGWCCY	2 cut(s)	557, 830
PsuI	RGATCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	888
RsaI	GTAC	2 cut(s)	644, 839
RsaNI	GTAC	2 cut(s)	643, 838
RseI	CAYNNNNRTG	1 cut(s)	926
SapI	GCTCTTC	1 cut(s)	900
SaqAI	TTAA	2 cut(s)	311, 1123
SatI	GCNGC	5 cut(s)	348, 576, 579, 594, 636
Sau3AI	GATC	7 cut(s)	195, 375, 426, 486, 702, 709, 932
Sau96I	GGNCC	4 cut(s)	495, 557, 591, 830
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	653, 895
SfaNI	GCATC	1 cut(s)	395
SinI	GGWCC	2 cut(s)	557, 830
SmiMI	CAYNNNNRTG	1 cut(s)	926
Sse9I	AATT	2 cut(s)	283, 544
SsiI	CCGC	5 cut(s)	329, 348, 594, 748, 759
SspI	AATATT	1 cut(s)	354
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	435, 454
TaaI	ACNGT	2 cut(s)	370, 642
TaiI	ACGT	3 cut(s)	77, 843, 926
TaqI	TCGA	3 cut(s)	77, 174, 1070
TaqII	GACCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	283, 544
TauI	GCSGC	2 cut(s)	350, 596
TfiI	GAWTC	3 cut(s)	208, 479, 1067
Tru1I	TTAA	2 cut(s)	311, 1123
Tru9I	TTAA	2 cut(s)	311, 1123
TseFI	GTSAC	2 cut(s)	331, 458
TseI	GCWGC	3 cut(s)	575, 578, 635
Tsp45I	GTSAC	2 cut(s)	331, 458
TspDTI	ATGAA	6 cut(s)	80, 116, 276, 592, 742, 1071
TspGWI	ACGGA	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	557, 830
XapI	RAATTY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	1112
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.