Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Forward (+)

20945689 .. 20949341

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18920.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCTGGCTATAGCGAATACATGCCATTCATGGCCATGGTTTTGGTCCAAGCGAGCTATGCAGGAATGAACATTATTTCAAAGCTTGCTATTGAATCTGACATGGACCCTCTTGTTCTTGTTGCTTATCGTCAAGTTTTCGCCACCGCTGTCATTGCTCCCTTTGCTTATTTGATGGAATGGGCCACTGCAAATCAGGTTTTTTATTTTCTCGGTTTAAAGACTTCGACCGCAACGATTGCATGCGCATTGCAAAACACACTTCCGGCCATGACATTTATCCTTGCAGTCATTTTCAGACAAGAATCTGCAAAGCTCAAGAGCAAAGCAGGGCTATCTAAGGCGATGGGAACAATTGTGTGTGTATCTGGAGCTATGTTACTTTCATTTTACCATGGACACATCATTGGTCTAGGTGACTCCAAAATTCACTGGACTTATGCTCAGAGAATGGGAGAAGCAAGTTCCAGCACCAAATCAAGCTCCTTTATTGGCCCCCTTTTTGTCATCTTAAGCACCTTAGGTTGGGCATTCTGGTTCATAATCCAAGGAAGTAACCGATCATCATCACCCTTTCATTTTTCAGTAGGGGAAAGCTTTCCAGCTCCTTATACAAGCACCACACTGATGTGTTTGATGGCCAGCTTTGAGTGTGGGATCATTGCTGTAATTGCTGATCACAAAGCGGCTTCATGGTCTCTAAAAGATCCCATTAGGCTTGTTGCATCCCTCTTTGCTGGAATTATGGGTTCTGCACTAGCATTCTTCCTCTCTTCATGGAGTATTCAGCTAAAAGGCCCTCTTTACGTGTCCGTGTTTAGTCCCTTGCTCCTCATCATTGTTGCCATTGCAAGCTGGGCTTTGCTCGATGAGAAATTATACGTTGGAACTGCTGTAGGGTCAGTTTTGATTGTTGCCGGGCTCTATCTTGTTCTTTGGGGAAAGAATAAGGAGACGAAGGATGAGAAGCCAACAAAAGCAACAGGCATGACAAAGACGACAGATGAGGCCAAGGCGTATGAGAAAAGCGACTTGGAGCTGCAGCAAGTGCATCCGAAAAGCATCCGTGACGTTATGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

361

Amino Acids

39.09

Weight (kDa)

8.71

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	247
AciI	CCGC	3 cut(s)	147, 231, 686
AclWI	GGATC	2 cut(s)	665, 701
AcoI	YGGCCR	3 cut(s)	33, 267, 639
AcsI	RAATTY	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	525
AflII	CTTAAG	1 cut(s)	511
AflIII	ACRYGT	1 cut(s)	807
AgsI	TTSAA	2 cut(s)	81, 95
AjuI	GAANNNNNNNTTGG	2 cut(s)	1016, 1048
AleI	CACNNNNGTG	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	702, 947
AlwI	GGATC	2 cut(s)	665, 701
AoxI	GGCC	7 cut(s)	33, 183, 267, 493, 639, 796, 1008
ApeKI	GCWGC	2 cut(s)	1039, 1042
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	5 cut(s)	46, 106, 183, 494, 797
AsuC2I	CCSGG	1 cut(s)	919
AsuHPI	GGTGA	2 cut(s)	428, 561
AvaII	GGWCC	2 cut(s)	46, 106
AxyI	CCTNAGG	1 cut(s)	520
BalI	TGGCCA	2 cut(s)	35, 641
BanII	GRGCYC	1 cut(s)	924
BbvI	GCAGC	2 cut(s)	1026, 1054
BccI	CCATC	3 cut(s)	169, 340, 631
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	1 cut(s)	919
BcoDI	GTCTC	2 cut(s)	702, 947
BfaI	CTAG	2 cut(s)	413, 758
BfmI	CTRYAG	3 cut(s)	10, 894, 1040
BfrI	CTTAAG	1 cut(s)	511
BisI	GCNGC	3 cut(s)	687, 1040, 1043
BlsI	GCNGC	3 cut(s)	688, 1041, 1044
Bme1390I	CCNGG	1 cut(s)	919
Bme18I	GGWCC	2 cut(s)	46, 106
BmgT120I	GGNCC	5 cut(s)	46, 106, 183, 494, 797
BmiI	GGNNCC	2 cut(s)	108, 496
BmrFI	CCNGG	1 cut(s)	919
BmsI	GCATC	3 cut(s)	734, 1060, 1071
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	919
BsaAI	YACGTR	1 cut(s)	808
BsaBI	GATNNNNATC	1 cut(s)	565
BsaI	GGTCTC	1 cut(s)	702
BsaJI	CCNNGG	4 cut(s)	36, 394, 547, 1011
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	437
Bse21I	CCTNAGG	1 cut(s)	520
Bse3DI	GCAATG	4 cut(s)	153, 248, 660, 846
Bse8I	GATNNNNATC	1 cut(s)	565
BseDI	CCNNGG	4 cut(s)	36, 394, 547, 1011
BseGI	GGATG	4 cut(s)	725, 967, 1051, 1062
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMI	GCAATG	4 cut(s)	153, 248, 660, 846
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	2 cut(s)	1026, 1054
BseYI	CCCAGC	1 cut(s)	855
BsgI	GTGCAG	1 cut(s)	738
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	7 cut(s)	35, 185, 269, 495, 641, 798, 1010
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	266, 918
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmAI	GTCTC	2 cut(s)	702, 947
BsmBI	CGTCTC	1 cut(s)	947
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	2 cut(s)	530, 761
BsnI	GGCC	7 cut(s)	35, 185, 269, 495, 641, 798, 1010
Bso31I	GGTCTC	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	924
Bsp143I	GATC	4 cut(s)	560, 657, 676, 706
Bsp19I	CCATGG	2 cut(s)	36, 394
BspACI	CCGC	3 cut(s)	147, 231, 686
BspANI	GGCC	7 cut(s)	35, 185, 269, 495, 641, 798, 1010
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	108, 496
BspMAI	CTGCAG	1 cut(s)	1044
BspPI	GGATC	2 cut(s)	665, 701
BspTI	CTTAAG	1 cut(s)	511
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	4 cut(s)	153, 248, 660, 846
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	4 cut(s)	36, 394, 547, 1011
BssMI	GATC	4 cut(s)	560, 657, 676, 706
BssT1I	CCWWGG	4 cut(s)	36, 394, 547, 1011
Bst6I	CTCTTC	1 cut(s)	778
BstAFI	CTTAAG	1 cut(s)	511
BstAPI	GCANNNNNTGC	2 cut(s)	239, 1048
BstBAI	YACGTR	1 cut(s)	808
BstC8I	GCNNGC	6 cut(s)	7, 55, 87, 244, 643, 853
BstDEI	CTNAG	3 cut(s)	339, 444, 520
BstDSI	CCRYGG	2 cut(s)	36, 394
BstF5I	GGATG	4 cut(s)	725, 967, 1051, 1062
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	4 cut(s)	563, 660, 679, 709
BstMAI	GTCTC	2 cut(s)	702, 947
BstMBI	GATC	4 cut(s)	560, 657, 676, 706
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 155, 164, 239, 671, 857, 1048
BstNSI	RCATGY	2 cut(s)	25, 246
BstSCI	CCNGG	1 cut(s)	917
BstSFI	CTRYAG	3 cut(s)	10, 894, 1040
BstV1I	GCAGC	2 cut(s)	1026, 1054
BstX2I	RGATCY	1 cut(s)	706
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	706
Bsu36I	CCTNAGG	1 cut(s)	520
BsuRI	GGCC	7 cut(s)	35, 185, 269, 495, 641, 798, 1010
BtgI	CCRYGG	2 cut(s)	36, 394
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	4 cut(s)	725, 967, 1051, 1062
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	3 cut(s)	186, 430, 623
Cac8I	GCNNGC	6 cut(s)	7, 55, 87, 244, 643, 853
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	5 cut(s)	46, 106, 183, 494, 797
DdeI	CTNAG	3 cut(s)	339, 444, 520
DpnI	GATC	4 cut(s)	562, 659, 678, 708
DpnII	GATC	4 cut(s)	560, 657, 676, 706
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	3 cut(s)	33, 267, 639
Eam1104I	CTCTTC	1 cut(s)	778
EarI	CTCTTC	1 cut(s)	778
Eco130I	CCWWGG	4 cut(s)	36, 394, 547, 1011
Eco24I	GRGCYC	1 cut(s)	924
Eco31I	GGTCTC	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	46, 106
Eco81I	CCTNAGG	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	797
EcoT14I	CCWWGG	4 cut(s)	36, 394, 547, 1011
EcoT38I	GRGCYC	1 cut(s)	924
ErhI	CCWWGG	4 cut(s)	36, 394, 547, 1011
Esp3I	CGTCTC	1 cut(s)	947
FalI	AAGNNNNNCTT	4 cut(s)	786, 818, 844, 876
FaqI	GGGAC	1 cut(s)	807
FbaI	TGATCA	1 cut(s)	676
Fnu4HI	GCNGC	3 cut(s)	687, 1040, 1043
FokI	GGATG	4 cut(s)	712, 974, 1038, 1049
FriOI	GRGCYC	1 cut(s)	924
Fsp4HI	GCNGC	3 cut(s)	687, 1040, 1043
FspAI	RTGCGCAY	1 cut(s)	247
FspBI	CTAG	2 cut(s)	413, 758
FspI	TGCGCA	1 cut(s)	247
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	3 cut(s)	687, 1040, 1043
GsaI	CCCAGC	1 cut(s)	859
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	7 cut(s)	35, 185, 269, 495, 641, 798, 1010
HapII	CCGG	2 cut(s)	266, 918
HhaI	GCGC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HindIII	AAGCTT	2 cut(s)	83, 595
HinfI	GANTC	3 cut(s)	95, 305, 419
HpaII	CCGG	2 cut(s)	266, 918
HphI	GGTGA	2 cut(s)	428, 561
Hpy188I	TCNGA	4 cut(s)	100, 299, 447, 1056
Hpy188III	TCNNGA	2 cut(s)	319, 369
HpyAV	CCTTC	1 cut(s)	952
HpyCH4IV	ACGT	3 cut(s)	807, 882, 1071
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 155, 164, 239, 671, 857, 1048
HpyF3I	CTNAG	3 cut(s)	339, 444, 520
HpySE526I	ACGT	3 cut(s)	807, 882, 1071
HspAI	GCGC	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	4 cut(s)	560, 657, 676, 706
LmnI	GCTCC	6 cut(s)	163, 371, 488, 610, 834, 1036
Lsp1109I	GCAGC	2 cut(s)	1026, 1054
LweI	GCATC	3 cut(s)	734, 1060, 1071
MaeI	CTAG	2 cut(s)	413, 758
MaeII	ACGT	3 cut(s)	807, 882, 1071
MaeIII	GTNAC	4 cut(s)	378, 416, 554, 1067
MalI	GATC	4 cut(s)	562, 659, 678, 708
MboI	GATC	4 cut(s)	560, 657, 676, 706
MboII	GAAGA	2 cut(s)	757, 765
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	706
MhlI	GDGCHC	1 cut(s)	924
MlsI	TGGCCA	2 cut(s)	35, 641
MluCI	AATT	5 cut(s)	354, 426, 669, 741, 875
MluNI	TGGCCA	2 cut(s)	35, 641
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	865
MnlI	CCTC	6 cut(s)	120, 740, 779, 810, 842, 1000
Mox20I	TGGCCA	2 cut(s)	35, 641
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	2 cut(s)	35, 641
MseI	TTAA	2 cut(s)	218, 512
MslI	CAYNNNNRTG	3 cut(s)	35, 626, 628
Msp20I	TGGCCA	2 cut(s)	35, 641
MspA1I	CMGCKG	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	2 cut(s)	266, 918
MspR9I	CCNGG	1 cut(s)	919
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	530, 761
MwoI	GCNNNNNNNGC	7 cut(s)	59, 155, 164, 239, 671, 857, 1048
NciI	CCSGG	1 cut(s)	919
NcoI	CCATGG	2 cut(s)	36, 394
NdeII	GATC	4 cut(s)	560, 657, 676, 706
NlaIV	GGNNCC	2 cut(s)	108, 496
NmuCI	GTSAC	2 cut(s)	416, 1067
NsbI	TGCGCA	1 cut(s)	247
NspI	RCATGY	2 cut(s)	25, 246
OliI	CACNNNNGTG	1 cut(s)	628
PaeI	GCATGC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PctI	GAATGC	2 cut(s)	530, 761
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	95, 305
PkrI	GCNGC	3 cut(s)	688, 1041, 1044
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Ppu21I	YACGTR	1 cut(s)	808
PspFI	CCCAGC	1 cut(s)	855
PspN4I	GGNNCC	2 cut(s)	108, 496
PspPI	GGNCC	5 cut(s)	46, 106, 183, 494, 797
PstI	CTGCAG	1 cut(s)	1044
PsuI	RGATCY	1 cut(s)	706
RseI	CAYNNNNRTG	3 cut(s)	35, 626, 628
SaqAI	TTAA	2 cut(s)	218, 512
SatI	GCNGC	3 cut(s)	687, 1040, 1043
Sau3AI	GATC	4 cut(s)	560, 657, 676, 706
Sau96I	GGNCC	5 cut(s)	46, 106, 183, 494, 797
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	919
SduI	GDGCHC	1 cut(s)	924
SfaNI	GCATC	3 cut(s)	734, 1060, 1071
SfcI	CTRYAG	3 cut(s)	10, 894, 1040
SinI	GGWCC	2 cut(s)	46, 106
SmiMI	CAYNNNNRTG	3 cut(s)	35, 626, 628
SmlI	CTYRAG	2 cut(s)	317, 511
SmoI	CTYRAG	2 cut(s)	317, 511
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	5 cut(s)	354, 426, 669, 741, 875
SsiI	CCGC	3 cut(s)	147, 231, 686
SspMI	CTAG	2 cut(s)	413, 758
StyD4I	CCNGG	1 cut(s)	917
StyI	CCWWGG	4 cut(s)	36, 394, 547, 1011
TaiI	ACGT	3 cut(s)	810, 885, 1074
TaqI	TCGA	2 cut(s)	227, 867
TasI	AATT	5 cut(s)	354, 426, 669, 741, 875
TauI	GCSGC	1 cut(s)	689
TfiI	GAWTC	2 cut(s)	95, 305
Tru1I	TTAA	2 cut(s)	218, 512
Tru9I	TTAA	2 cut(s)	218, 512
TscAI	CASTG	3 cut(s)	193, 437, 630
TseFI	GTSAC	2 cut(s)	416, 1067
TseI	GCWGC	2 cut(s)	1039, 1042
Tsp45I	GTSAC	2 cut(s)	416, 1067
TspDTI	ATGAA	7 cut(s)	19, 83, 375, 529, 566, 681, 765
TspGWI	ACGGA	2 cut(s)	802, 1055
TspRI	CASTG	3 cut(s)	193, 437, 630
Vha464I	CTTAAG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	46, 106
XapI	RAATTY	1 cut(s)	426
XceI	RCATGY	2 cut(s)	25, 246
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	2 cut(s)	413, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.