Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Reverse (-)

6745869 .. 6749881

Gene Structure 4013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG087100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCAATTGGTTATGGTAATAGCTATATGCCATTTGTGGCCATGGTGTTTGTGCAAGTGTGCTATGCAGGAATGAACATCACTTCAAAGCTTGCTCTGGAGGCGGAGCTGAACCCTCTTATTCTTGTAGCTTATCGACAAATTTTCGCCACCGTAGCCTTAGCTCCTTTCGCTTATTGGATGGAATGGAAAACAAGACCCGAGATCACAATGCCTATCCTTTTCCAGATTTTCCTATGTTCCTTAACTGGGGCAACTACAAACCAAGTTTTCTATTTTCTTGGATTGAACAAAACCACTCCAACCGTTGCTTGTGCATTGACAAATACGCTCCCAGCTATGACATTTATCCTTGCAGTCCTTTTCAGACAAGAATCAGCAAAAATGAAGAGCAAGGCAGGGTTGGCTAAGGTGATGGGAACAGCAGTGTGTGTATGTGGAGCCATGATACTCTCATTTTACCATGGAAAAAACATTGGTATAGGTGAATCCAAAATTCGCTGGAGTTATGCTCAGAGAATGGGACAGTCAAACTCAGGAAACAATGCCAACTCCTTTGTTGGCCCCCTTTTAGTCATCATCAGCACCTTAGGTTGGGCAATGTGGTTCATCATCCAAGCAACAGTAAGTGATATGTTTCCAGCTCCTTACACAAGCACTACATTGATGTGTTTCATGGCTAGTTTGGAGTGTGGGCTCGTTGCTGTAATTGTCGAGCATAATGGACGTGCATGGTCATTGACCAATCCCATGAAGCTTACTGCAAGCCTCTATGCAGGGATTATGGGTTCTGCAGTAGCATTTTTCCTCACTTCATGGAGCATTCAGAGGAAAGGAGCTCTTTATGCGTCAGTGTTCAGCCCTTTGCTGCTCATTGTTGTGGCTGTTTCGAGTTGGGCTCTGCTTGATGAGAAATTATACCTGGGAACTGCTTTAGGATCGATCTTGATTGTGGCCGGGCTCTATTCTGTTCTTTGGGGGAAGACCAAGGAGACCGCTAAGCATAAGGGCAAAGAAACAGTAGACCCAAATACAAAGCCAAATGCTGCTGCCAAGGAAATTGAGAAAAACGACTTGGAGCTGCAGCTGCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

365

Amino Acids

39.78

Weight (kDa)

9.2

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	14 - 151	3.5e-16	EamA-like transporter family
EamA	PF00892	188 - 325	1.7e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1023
AciI	CCGC	2 cut(s)	104, 996
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	2 cut(s)	39, 954
AcsI	RAATTY	2 cut(s)	141, 495
AfiI	CCNNNNNNNGG	2 cut(s)	249, 594
AgsI	TTSAA	2 cut(s)	87, 289
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	921
AjuI	GAANNNNNNNTTGG	2 cut(s)	1058, 1090
AloI	GAACNNNNNNTCC	2 cut(s)	772, 804
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	986
AlwI	GGATC	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	39, 562, 954
ApeKI	GCWGC	6 cut(s)	868, 1046, 1049, 1081, 1084, 1087
ApoI	RAATTY	2 cut(s)	141, 495
AspS9I	GGNCC	1 cut(s)	563
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	2 cut(s)	424, 497
AvaI	CYCGRG	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	4 cut(s)	699, 841, 901, 963
BbsI	GAAGAC	1 cut(s)	989
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	5 cut(s)	855, 1033, 1036, 1068, 1074
BccI	CCATC	2 cut(s)	175, 409
BciT130I	CCWGG	1 cut(s)	923
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	2 cut(s)	792, 1082
BisI	GCNGC	6 cut(s)	869, 1047, 1050, 1082, 1085, 1088
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	6 cut(s)	870, 1048, 1051, 1083, 1086, 1089
Bme1390I	CCNGG	2 cut(s)	923, 958
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	442, 565
BmrFI	CCNGG	2 cut(s)	923, 958
BmrI	ACTGGG	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	4 cut(s)	496, 528, 883, 915
BpmI	CTGGAG	2 cut(s)	119, 523
Bpu10I	CCTNAGC	2 cut(s)	160, 408
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	958
Bsa29I	ATCGAT	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1053
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 594
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	923
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1053
BseGI	GGATG	2 cut(s)	186, 612
BseLI	CCNNNNNNNGG	2 cut(s)	249, 594
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	527, 549
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	5 cut(s)	855, 1033, 1036, 1068, 1074
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	41, 564, 956
BshVI	ATCGAT	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	957
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	249, 594
BsmAI	GTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	41, 564, 956
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	699, 841, 901, 963
Bsp143I	GATC	3 cut(s)	204, 938, 942
Bsp1720I	GCTNAGC	1 cut(s)	999
Bsp19I	CCATGG	2 cut(s)	42, 463
BspACI	CCGC	2 cut(s)	104, 996
BspANI	GGCC	3 cut(s)	41, 564, 956
BspCNI	CTCAG	2 cut(s)	526, 548
BspDI	ATCGAT	1 cut(s)	941
BspLI	GGNNCC	2 cut(s)	442, 565
BspMAI	CTGCAG	2 cut(s)	796, 1086
BspPI	GGATC	1 cut(s)	946
BspQI	GCTCTTC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1053
BssMI	GATC	3 cut(s)	204, 938, 942
BssT1I	CCWWGG	4 cut(s)	42, 463, 987, 1053
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	5 cut(s)	154, 307, 528, 625, 1021
Bst6I	CTCTTC	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	93, 766
BstDEI	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
BstDSI	CCRYGG	2 cut(s)	42, 463
BstF5I	GGATG	2 cut(s)	186, 612
BstKTI	GATC	3 cut(s)	207, 941, 945
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	3 cut(s)	204, 938, 942
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1087
BstNI	CCWGG	1 cut(s)	923
BstSCI	CCNGG	2 cut(s)	921, 956
BstSFI	CTRYAG	2 cut(s)	792, 1082
BstV1I	GCAGC	5 cut(s)	855, 1033, 1036, 1068, 1074
BstV2I	GAAGAC	1 cut(s)	989
Bsu15I	ATCGAT	1 cut(s)	941
Bsu36I	CCTNAGG	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	41, 564, 956
BsuTUI	ATCGAT	1 cut(s)	941
BtgI	CCRYGG	2 cut(s)	42, 463
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	2 cut(s)	186, 612
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	432, 858
Cac8I	GCNNGC	2 cut(s)	93, 766
Cfr13I	GGNCC	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	941
CseI	GACGC	1 cut(s)	837
CviAII	CATG	7 cut(s)	43, 445, 464, 676, 732, 751, 816
DdeI	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
DpnI	GATC	3 cut(s)	206, 940, 944
DpnII	GATC	3 cut(s)	204, 938, 942
EaeI	YGGCCR	2 cut(s)	39, 954
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	4 cut(s)	42, 463, 987, 1053
Eco24I	GRGCYC	4 cut(s)	699, 841, 901, 963
Eco31I	GGTCTC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	839
Eco81I	CCTNAGG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	4 cut(s)	42, 463, 987, 1053
EcoT38I	GRGCYC	4 cut(s)	699, 841, 901, 963
ErhI	CCWWGG	4 cut(s)	42, 463, 987, 1053
FaeI	CATG	7 cut(s)	46, 448, 467, 679, 735, 754, 819
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	7 cut(s)	42, 444, 463, 675, 731, 750, 815
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	6 cut(s)	869, 1047, 1050, 1082, 1085, 1088
FokI	GGATG	2 cut(s)	193, 599
FriOI	GRGCYC	4 cut(s)	699, 841, 901, 963
Fsp4HI	GCNGC	6 cut(s)	869, 1047, 1050, 1082, 1085, 1088
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	6 cut(s)	869, 1047, 1050, 1082, 1085, 1088
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	2 cut(s)	119, 523
HaeIII	GGCC	3 cut(s)	41, 564, 956
HapII	CCGG	1 cut(s)	957
HgaI	GACGC	1 cut(s)	837
Hin1II	CATG	7 cut(s)	46, 448, 467, 679, 735, 754, 819
HindIII	AAGCTT	2 cut(s)	89, 755
HinfI	GANTC	2 cut(s)	374, 488
HpaII	CCGG	1 cut(s)	957
HphI	GGTGA	2 cut(s)	424, 497
Hpy166II	GTNNAC	1 cut(s)	1024
Hpy188I	TCNGA	3 cut(s)	368, 516, 828
Hpy188III	TCNNGA	4 cut(s)	98, 226, 537, 946
Hpy8I	GTNNAC	1 cut(s)	1024
HpyCH4III	ACNGT	5 cut(s)	154, 307, 528, 625, 1021
HpyCH4IV	ACGT	1 cut(s)	727
HpyCH4V	TGCA	9 cut(s)	55, 68, 317, 356, 731, 764, 776, 794, 1084
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1087
HpyF3I	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
HpySE526I	ACGT	1 cut(s)	727
Hsp92II	CATG	7 cut(s)	46, 448, 467, 679, 735, 754, 819
Kzo9I	GATC	3 cut(s)	204, 938, 942
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	8 cut(s)	106, 169, 336, 440, 649, 819, 836, 1078
Lsp1109I	GCAGC	5 cut(s)	855, 1033, 1036, 1068, 1074
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	727
MalI	GATC	3 cut(s)	206, 940, 944
MboI	GATC	3 cut(s)	204, 938, 942
MboII	GAAGA	2 cut(s)	400, 994
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	4 cut(s)	699, 841, 901, 963
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	6, 141, 495, 708, 914, 1059
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	5 cut(s)	94, 126, 779, 818, 822
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	667, 878
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	1087
MspI	CCGG	1 cut(s)	957
MspR9I	CCNGG	2 cut(s)	923, 958
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1087
NciI	CCSGG	1 cut(s)	958
NcoI	CCATGG	2 cut(s)	42, 463
NdeII	GATC	3 cut(s)	204, 938, 942
NlaIII	CATG	7 cut(s)	46, 448, 467, 679, 735, 754, 819
NlaIV	GGNNCC	2 cut(s)	442, 565
PciSI	GCTCTTC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	2 cut(s)	374, 488
PkrI	GCNGC	6 cut(s)	870, 1048, 1051, 1083, 1086, 1089
Psp124BI	GAGCTC	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	2 cut(s)	442, 565
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	796, 1086
PvuII	CAGCTG	1 cut(s)	1087
RseI	CAYNNNNRTG	2 cut(s)	667, 878
SacI	GAGCTC	1 cut(s)	841
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	6 cut(s)	869, 1047, 1050, 1082, 1085, 1088
Sau3AI	GATC	3 cut(s)	204, 938, 942
Sau96I	GGNCC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	923, 958
SduI	GDGCHC	4 cut(s)	699, 841, 901, 963
SfcI	CTRYAG	2 cut(s)	792, 1082
SmiMI	CAYNNNNRTG	2 cut(s)	667, 878
Sse9I	AATT	6 cut(s)	6, 141, 495, 708, 914, 1059
SsiI	CCGC	2 cut(s)	104, 996
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	2 cut(s)	921, 956
StyI	CCWWGG	4 cut(s)	42, 463, 987, 1053
TaaI	ACNGT	5 cut(s)	154, 307, 528, 625, 1021
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	4 cut(s)	136, 714, 890, 941
TasI	AATT	6 cut(s)	6, 141, 495, 708, 914, 1059
TfiI	GAWTC	2 cut(s)	374, 488
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	432, 858
TseI	GCWGC	6 cut(s)	868, 1046, 1049, 1081, 1084, 1087
TspDTI	ATGAA	6 cut(s)	89, 401, 598, 664, 767, 804
TspRI	CASTG	2 cut(s)	432, 858
XapI	RAATTY	2 cut(s)	141, 495
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.