Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Reverse (-)

6615246 .. 6618354

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGCAATTGGTTATGGTAATAGCTATATGCCATTTGTGGCCATGGTGTTTGTGCAAGTGTGCTATGCAGGAATGAACATCACTTCAAAGCTTGCTCTGGAGGCGGAGCTGAACCCTCTTATTCTTGTAGCTTATCGACAAATTTTCGCCACCGTAGCCTTAGCTCCTTTCGCTTATTGGATGGAATGGAAAACAAGACCCGAGATCACAATGCCTATCCTTTTCCAGATTTTCCTATGTTCCTTAACTGGGGCTACTACAAACCAAGTTTTCTATTTTCTTGGATTGAACAAAACCACTCCAACCGTTGCTTGTGCATTGACAAATACGCTCCCAGCTATGACATTTATCCTTGCAGTCCTTTTCAGACAAGAATCAGCAAAAATGAAGAGCAAGGCAGGGTTGGCTAAGGTGATGGGAACAGCAGTGTGTGTATGTGGAGCCATGATACTCTCATTTTACCATGGAAAAAACATTGGTATAGGTGAATCCAAAATTCGCTGGAGTTATGCTCAGAGAATGGGACAGTCAAACTCAGGAAACAATGCCAACTCCTTTGTTGGCCCCCTTTTAGTCATCATCAGCACCTTAGGTTGGGCAATGTGGTTCATCATCCAAGCAACAGTAAGTGATATGTTTCCAGCTCCTTACACAAGCACTACATTGATGTGTTTCATGGCTAGTTTGGAGTGTGGGCTCGTTGCTGTAATTGTCGAGCATAATGGACGTGCATGGTCATTGACCAATCCCATGAAGCTTACTGCAAGCCTCTATGCAGGGATTATGGGTTCTGCAGTAGCATTTTTCCTCACTTCATGGAGCATTCAGAGGAAAGGAGCTCTTTATGCGTCAGTGTTCAGCCCTTTGCTGCTCATTGTTGTGGCTGTTTCGAGTTGGGCTCTGCTTGATGAGAAATTATACCTGGGAACTGCTTTAGGATCGATCTTGATTGTGGCCGGGCTCTATTCTGTTCTTTGGGGGAAGACCAAGGAGACCGCTAAGCATAAGGGCAAAGAAACAGACGCCCAAATACAAAGCCAAATGCTGCTGCCAAGGAAATTGAGAAAAACGACTTGGAGCTGCAGCTGCCCAAGTGAGAAGATTCACTGCCGTATTGAATGTTTCATGACATATATGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

380

Amino Acids

41.81

Weight (kDa)

9.3

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	14 - 151	3.8e-16	EamA-like transporter family
EamA	PF00892	188 - 325	1.9e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	104, 996
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	2 cut(s)	39, 954
AcsI	RAATTY	2 cut(s)	141, 495
AcyI	GRCGYC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	2 cut(s)	249, 594
AgsI	TTSAA	3 cut(s)	87, 289, 1118
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	921
AjuI	GAANNNNNNNTTGG	2 cut(s)	1057, 1089
AloI	GAACNNNNNNTCC	2 cut(s)	772, 804
Alw21I	GWGCWC	1 cut(s)	841
Alw26I	GTCTC	1 cut(s)	986
AlwI	GGATC	1 cut(s)	946
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	39, 562, 954
ApeKI	GCWGC	6 cut(s)	868, 1045, 1048, 1080, 1083, 1086
ApoI	RAATTY	2 cut(s)	141, 495
AspS9I	GGNCC	1 cut(s)	563
AsuC2I	CCSGG	1 cut(s)	958
AsuHPI	GGTGA	2 cut(s)	424, 497
AvaI	CYCGRG	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	41
BanII	GRGCYC	4 cut(s)	699, 841, 901, 963
BbsI	GAAGAC	1 cut(s)	989
Bbv12I	GWGCWC	1 cut(s)	841
BbvI	GCAGC	6 cut(s)	855, 1032, 1035, 1067, 1073, 1095
BccI	CCATC	2 cut(s)	175, 409
BceAI	ACGGC	1 cut(s)	1095
BciT130I	CCWGG	1 cut(s)	923
BcnI	CCSGG	1 cut(s)	958
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	2 cut(s)	792, 1081
BisI	GCNGC	6 cut(s)	869, 1046, 1049, 1081, 1084, 1087
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	6 cut(s)	870, 1047, 1050, 1082, 1085, 1088
Bme1390I	CCNGG	2 cut(s)	923, 958
BmeT110I	CYCGRG	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	442, 565
BmrFI	CCNGG	2 cut(s)	923, 958
BmrI	ACTGGG	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	4 cut(s)	496, 528, 883, 915
BpmI	CTGGAG	2 cut(s)	119, 523
Bpu10I	CCTNAGC	2 cut(s)	160, 408
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	958
Bsa29I	ATCGAT	1 cut(s)	941
BsaHI	GRCGYC	1 cut(s)	1023
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1052
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 594
Bse1I	ACTGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	923
BseCI	ATCGAT	1 cut(s)	941
BseDI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1052
BseGI	GGATG	2 cut(s)	186, 612
BseLI	CCNNNNNNNGG	2 cut(s)	249, 594
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	527, 549
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	6 cut(s)	855, 1032, 1035, 1067, 1073, 1095
BseYI	CCCAGC	1 cut(s)	334
BshFI	GGCC	3 cut(s)	41, 564, 956
BshVI	ATCGAT	1 cut(s)	941
BsiHKAI	GWGCWC	1 cut(s)	841
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	957
BslFI	GGGAC	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	249, 594
BsmAI	GTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	537
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	3 cut(s)	41, 564, 956
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	4 cut(s)	699, 841, 901, 963
Bsp143I	GATC	3 cut(s)	204, 938, 942
Bsp1720I	GCTNAGC	1 cut(s)	999
Bsp19I	CCATGG	2 cut(s)	42, 463
BspACI	CCGC	2 cut(s)	104, 996
BspANI	GGCC	3 cut(s)	41, 564, 956
BspCNI	CTCAG	2 cut(s)	526, 548
BspDI	ATCGAT	1 cut(s)	941
BspHI	TCATGA	1 cut(s)	1125
BspLI	GGNNCC	2 cut(s)	442, 565
BspMAI	CTGCAG	2 cut(s)	796, 1085
BspPI	GGATC	1 cut(s)	946
BspQI	GCTCTTC	1 cut(s)	383
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	253
BssECI	CCNNGG	5 cut(s)	42, 463, 922, 987, 1052
BssMI	GATC	3 cut(s)	204, 938, 942
BssNI	GRCGYC	1 cut(s)	1023
BssT1I	CCWWGG	4 cut(s)	42, 463, 987, 1052
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	4 cut(s)	154, 307, 528, 625
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	1023
BstC8I	GCNNGC	2 cut(s)	93, 766
BstDEI	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
BstDSI	CCRYGG	2 cut(s)	42, 463
BstF5I	GGATG	2 cut(s)	186, 612
BstKTI	GATC	3 cut(s)	207, 941, 945
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	3 cut(s)	204, 938, 942
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1086
BstNI	CCWGG	1 cut(s)	923
BstSCI	CCNGG	2 cut(s)	921, 956
BstSFI	CTRYAG	2 cut(s)	792, 1081
BstV1I	GCAGC	6 cut(s)	855, 1032, 1035, 1067, 1073, 1095
BstV2I	GAAGAC	1 cut(s)	989
Bsu15I	ATCGAT	1 cut(s)	941
Bsu36I	CCTNAGG	1 cut(s)	589
BsuRI	GGCC	3 cut(s)	41, 564, 956
BsuTUI	ATCGAT	1 cut(s)	941
BtgI	CCRYGG	2 cut(s)	42, 463
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	2 cut(s)	186, 612
BtsI	GCAGTG	2 cut(s)	432, 1105
BtsIMutI	CAGTG	3 cut(s)	432, 858, 1105
Cac8I	GCNNGC	2 cut(s)	93, 766
CciI	TCATGA	1 cut(s)	1125
Cfr13I	GGNCC	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	941
CseI	GACGC	2 cut(s)	837, 1031
CviAII	CATG	8 cut(s)	43, 445, 464, 676, 732, 751, 816, 1126
DdeI	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
DpnI	GATC	3 cut(s)	206, 940, 944
DpnII	GATC	3 cut(s)	204, 938, 942
EaeI	YGGCCR	2 cut(s)	39, 954
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
EciI	GGCGGA	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	839
Eco130I	CCWWGG	4 cut(s)	42, 463, 987, 1052
Eco24I	GRGCYC	4 cut(s)	699, 841, 901, 963
Eco31I	GGTCTC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	839
Eco81I	CCTNAGG	1 cut(s)	589
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	839
EcoRII	CCWGG	1 cut(s)	921
EcoT14I	CCWWGG	4 cut(s)	42, 463, 987, 1052
EcoT22I	ATGCAT	1 cut(s)	1140
EcoT38I	GRGCYC	4 cut(s)	699, 841, 901, 963
ErhI	CCWWGG	4 cut(s)	42, 463, 987, 1052
FaeI	CATG	8 cut(s)	46, 448, 467, 679, 735, 754, 819, 1129
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	1 cut(s)	537
FatI	CATG	8 cut(s)	42, 444, 463, 675, 731, 750, 815, 1125
Fnu4HI	GCNGC	6 cut(s)	869, 1046, 1049, 1081, 1084, 1087
FokI	GGATG	2 cut(s)	193, 599
FriOI	GRGCYC	4 cut(s)	699, 841, 901, 963
Fsp4HI	GCNGC	6 cut(s)	869, 1046, 1049, 1081, 1084, 1087
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	6 cut(s)	869, 1046, 1049, 1081, 1084, 1087
GsaI	CCCAGC	1 cut(s)	338
GsuI	CTGGAG	2 cut(s)	119, 523
HaeIII	GGCC	3 cut(s)	41, 564, 956
HapII	CCGG	1 cut(s)	957
HgaI	GACGC	2 cut(s)	837, 1031
Hin1I	GRCGYC	1 cut(s)	1023
Hin1II	CATG	8 cut(s)	46, 448, 467, 679, 735, 754, 819, 1129
HindIII	AAGCTT	2 cut(s)	89, 755
HinfI	GANTC	3 cut(s)	374, 488, 1102
HpaII	CCGG	1 cut(s)	957
HphI	GGTGA	2 cut(s)	424, 497
Hpy188I	TCNGA	3 cut(s)	368, 516, 828
Hpy188III	TCNNGA	5 cut(s)	98, 226, 537, 946, 1126
HpyCH4III	ACNGT	4 cut(s)	154, 307, 528, 625
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1086
HpyF3I	CTNAG	6 cut(s)	160, 408, 513, 535, 589, 999
HpySE526I	ACGT	1 cut(s)	727
Hsp92I	GRCGYC	1 cut(s)	1023
Hsp92II	CATG	8 cut(s)	46, 448, 467, 679, 735, 754, 819, 1129
Kzo9I	GATC	3 cut(s)	204, 938, 942
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	8 cut(s)	106, 169, 336, 440, 649, 819, 836, 1077
Lsp1109I	GCAGC	6 cut(s)	855, 1032, 1035, 1067, 1073, 1095
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	1 cut(s)	727
MalI	GATC	3 cut(s)	206, 940, 944
MboI	GATC	3 cut(s)	204, 938, 942
MboII	GAAGA	3 cut(s)	400, 994, 1111
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	4 cut(s)	699, 841, 901, 963
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	6 cut(s)	6, 141, 495, 708, 914, 1058
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	5 cut(s)	94, 126, 779, 818, 822
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	1 cut(s)	1140
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	667, 878
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	1086
MspI	CCGG	1 cut(s)	957
MspR9I	CCNGG	2 cut(s)	923, 958
MunI	CAATTG	1 cut(s)	6
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	6 cut(s)	101, 155, 170, 404, 845, 1086
NciI	CCSGG	1 cut(s)	958
NcoI	CCATGG	2 cut(s)	42, 463
NdeII	GATC	3 cut(s)	204, 938, 942
NlaIII	CATG	8 cut(s)	46, 448, 467, 679, 735, 754, 819, 1129
NlaIV	GGNNCC	2 cut(s)	442, 565
NsiI	ATGCAT	1 cut(s)	1140
PagI	TCATGA	1 cut(s)	1125
PciSI	GCTCTTC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	3 cut(s)	374, 488, 1102
PkrI	GCNGC	6 cut(s)	870, 1047, 1050, 1082, 1085, 1088
Psp124BI	GAGCTC	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	921
PspFI	CCCAGC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	2 cut(s)	442, 565
PspPI	GGNCC	1 cut(s)	563
PstI	CTGCAG	2 cut(s)	796, 1085
PvuII	CAGCTG	1 cut(s)	1086
RseI	CAYNNNNRTG	2 cut(s)	667, 878
SacI	GAGCTC	1 cut(s)	841
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	6 cut(s)	869, 1046, 1049, 1081, 1084, 1087
Sau3AI	GATC	3 cut(s)	204, 938, 942
Sau96I	GGNCC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	923, 958
SduI	GDGCHC	4 cut(s)	699, 841, 901, 963
SfcI	CTRYAG	2 cut(s)	792, 1081
SmiMI	CAYNNNNRTG	2 cut(s)	667, 878
Sse9I	AATT	6 cut(s)	6, 141, 495, 708, 914, 1058
SsiI	CCGC	2 cut(s)	104, 996
SspMI	CTAG	1 cut(s)	681
SstI	GAGCTC	1 cut(s)	841
StyD4I	CCNGG	2 cut(s)	921, 956
StyI	CCWWGG	4 cut(s)	42, 463, 987, 1052
TaaI	ACNGT	4 cut(s)	154, 307, 528, 625
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	4 cut(s)	136, 714, 890, 941
TasI	AATT	6 cut(s)	6, 141, 495, 708, 914, 1058
TfiI	GAWTC	3 cut(s)	374, 488, 1102
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	3 cut(s)	432, 858, 1112
TseI	GCWGC	6 cut(s)	868, 1045, 1048, 1080, 1083, 1086
TspDTI	ATGAA	7 cut(s)	89, 401, 598, 664, 767, 804, 1114
TspRI	CASTG	3 cut(s)	432, 858, 1112
XapI	RAATTY	2 cut(s)	141, 495
XspI	CTAG	1 cut(s)	681
Zsp2I	ATGCAT	1 cut(s)	1140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.