Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Forward (+)

27763776 .. 27766976

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTGGCTATGGTGATTACTTGCCATTCTTGGCCATGGTGCTTGTCCAAATGAGCTATGCAGGAATGAACATCATTTCAAAGCTTGCTATCGAATCTGACATGAACCCTCTTGTTCTTGTTGCTTATCGCCAAGTTTTCGCCACCCTTTCCATTGCCCCCTTTGCTTATTGGATGGAATGGAAAACAAGACCCAGGATCACAATGCCTATTCTTTTCCAGACTTTTCTATGCTCTTTAACTGGGGCAACTGCAAATCAGGTTTTCTATTTTGTTGGTTTGAAGACTTCGACCCCAACCATTGCATGCGCATTGACCAATACACTTCCAGCAATGACATTTATCCTTGCACTCATTTTCAGACAAGAATCTGCAAAAATAAAGAGCAAACCAGGATTGTCAAAGGTGATGGGAACAGTTGTGTGTGTGTCTGGAGCCATGCTGCTTTCATTTTACCATGGACACATCATTGGCTTAGGTGAGTCCAAAATTCACTGGGCATATGCTCAGAGAATGGGAGAGCAGGCAAATTCCAGCTCCAATGGAAGTTCCTTTGTGGGCCCCCTTTGTGTAATCATAAGCACCTTAGGTTGGGCATTCTGGTTCATAATCCAAGCGAAAGTTGGGGAGAATTTTCCAGCTCCTTATACAAGCACCACATTGATGTGTTTGATGGCCAGCTTTGAGTGTGGGATCATTGCTGTGATTGCTGATCACAAAGTTTCTGCTTGGTCATTGAAAAATCCCATGCGGCTTATTTCAGCCCTCTATTGTGGAATTTTGGGTTCTGCACTAGCTTTCTTCCTCTCTTCCTGGAGTATTCAGAGAAAAGGCCCTCTTTACGTGTCGGTGTTCAGCCCCTTGCTCCTCATTATTGTGGCCATTTCAAGTTGGGCTCTGCTTGAGGAGAAATTATACCTTGGAACTGCCATAGGGTCTATTTTGATCGTTTGCGGGCTCTATCTTGTTCTGTGGGGGAAGAACAAGGAGACGGAGGTTGAGAAGCCAACAAAAGAAACAGACACAACAAAGGCAGATCATGCCAAGGAGTATGAGAGAAACGACTTGGAACTGCAGCTGCAAGTGCACTCAAAAAGCGACAGTGACGTTATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

373

Amino Acids

40.91

Weight (kDa)

8.51

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
AciI	CCGC	2 cut(s)	751, 954
AclWI	GGATC	2 cut(s)	206, 701
AcoI	YGGCCR	3 cut(s)	33, 675, 879
AcsI	RAATTY	4 cut(s)	489, 529, 631, 777
AfiI	CCNNNNNNNGG	1 cut(s)	591
AflIII	ACRYGT	1 cut(s)	843
AgsI	TTSAA	4 cut(s)	81, 283, 739, 888
AjnI	CCWGG	3 cut(s)	194, 391, 812
AluBI	AGCT	7 cut(s)	57, 85, 537, 641, 681, 797, 1078
AluI	AGCT	7 cut(s)	57, 85, 537, 641, 681, 797, 1078
Alw21I	GWGCWC	1 cut(s)	1089
Alw26I	GTCTC	1 cut(s)	983
Alw44I	GTGCAC	1 cut(s)	1085
AlwI	GGATC	2 cut(s)	206, 701
AoxI	GGCC	5 cut(s)	33, 559, 675, 832, 879
ApaI	GGGCCC	1 cut(s)	563
ApaLI	GTGCAC	1 cut(s)	1085
ApeKI	GCWGC	3 cut(s)	442, 1075, 1078
ApoI	RAATTY	4 cut(s)	489, 529, 631, 777
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	3 cut(s)	559, 560, 833
AsuHPI	GGTGA	3 cut(s)	26, 418, 491
AxyI	CCTNAGG	1 cut(s)	586
BaeGI	GKGCMC	2 cut(s)	563, 1089
BalI	TGGCCA	3 cut(s)	35, 677, 881
BanII	GRGCYC	3 cut(s)	563, 898, 960
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	1089
BbvI	GCAGC	3 cut(s)	429, 1065, 1087
BccI	CCATC	3 cut(s)	169, 403, 667
BciT130I	CCWGG	3 cut(s)	196, 393, 814
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	983
BfaI	CTAG	1 cut(s)	794
BfmI	CTRYAG	1 cut(s)	1073
BisI	GCNGC	4 cut(s)	443, 752, 1076, 1079
BlsI	GCNGC	4 cut(s)	444, 753, 1077, 1080
Bme1390I	CCNGG	3 cut(s)	196, 393, 814
BmgT120I	GGNCC	3 cut(s)	559, 560, 833
BmiI	GGNNCC	3 cut(s)	436, 561, 562
BmrFI	CCNGG	3 cut(s)	196, 393, 814
BmrI	ACTGGG	2 cut(s)	252, 505
BmuI	ACTGGG	2 cut(s)	252, 505
BpiI	GAAGAC	1 cut(s)	290
BpmI	CTGGAG	2 cut(s)	453, 835
Bpu10I	CCTNAGC	1 cut(s)	475
BpuEI	CTTGAG	1 cut(s)	923
BsaAI	YACGTR	1 cut(s)	844
BsaJI	CCNNGG	5 cut(s)	36, 194, 457, 919, 1044
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse1I	ACTGG	2 cut(s)	247, 500
Bse21I	CCTNAGG	1 cut(s)	586
Bse3DI	GCAATG	4 cut(s)	153, 300, 339, 696
BseBI	CCWGG	3 cut(s)	196, 393, 814
BseDI	CCNNGG	5 cut(s)	36, 194, 457, 919, 1044
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	4 cut(s)	153, 300, 339, 696
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	247, 500
BseRI	GAGGAG	2 cut(s)	857, 920
BseSI	GKGCMC	2 cut(s)	563, 1089
BseXI	GCAGC	3 cut(s)	429, 1065, 1087
BsgI	GTGCAG	1 cut(s)	774
BshFI	GGCC	5 cut(s)	35, 561, 677, 834, 881
BsiHKAI	GWGCWC	1 cut(s)	1089
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	1 cut(s)	983
BsmBI	CGTCTC	1 cut(s)	983
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	5 cut(s)	35, 561, 677, 834, 881
Bsp120I	GGGCCC	1 cut(s)	559
Bsp1286I	GDGCHC	4 cut(s)	563, 898, 960, 1089
Bsp143I	GATC	5 cut(s)	198, 693, 712, 945, 1036
Bsp19I	CCATGG	2 cut(s)	36, 457
BspACI	CCGC	2 cut(s)	751, 954
BspANI	GGCC	5 cut(s)	35, 561, 677, 834, 881
BspCNI	CTCAG	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	436, 561, 562
BspMAI	CTGCAG	1 cut(s)	1077
BspPI	GGATC	2 cut(s)	206, 701
BsrDI	GCAATG	4 cut(s)	153, 300, 339, 696
BsrI	ACTGG	2 cut(s)	247, 500
BssECI	CCNNGG	5 cut(s)	36, 194, 457, 919, 1044
BssMI	GATC	5 cut(s)	198, 693, 712, 945, 1036
BssT1I	CCWWGG	4 cut(s)	36, 457, 919, 1044
Bst2UI	CCWGG	3 cut(s)	196, 393, 814
Bst4CI	ACNGT	2 cut(s)	418, 1103
Bst6I	CTCTTC	1 cut(s)	814
BstAPI	GCANNNNNTGC	1 cut(s)	1040
BstBAI	YACGTR	1 cut(s)	844
BstC8I	GCNNGC	6 cut(s)	7, 87, 307, 525, 679, 956
BstDEI	CTNAG	3 cut(s)	475, 507, 586
BstDSI	CCRYGG	2 cut(s)	36, 457
BstF5I	GGATG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	5 cut(s)	201, 696, 715, 948, 1039
BstMAI	GTCTC	1 cut(s)	983
BstMBI	GATC	5 cut(s)	198, 693, 712, 945, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 707, 1040, 1084
BstNI	CCWGG	3 cut(s)	196, 393, 814
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	3 cut(s)	194, 391, 812
BstSFI	CTRYAG	1 cut(s)	1073
BstSLI	GKGCMC	2 cut(s)	563, 1089
BstV1I	GCAGC	3 cut(s)	429, 1065, 1087
BstV2I	GAAGAC	1 cut(s)	290
Bsu36I	CCTNAGG	1 cut(s)	586
BsuRI	GGCC	5 cut(s)	35, 561, 677, 834, 881
BtgI	CCRYGG	2 cut(s)	36, 457
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	493, 1108
Cac8I	GCNNGC	6 cut(s)	7, 87, 307, 525, 679, 956
CfoI	GCGC	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	559, 560, 833
CviAII	CATG	7 cut(s)	37, 103, 306, 439, 458, 748, 1040
DdeI	CTNAG	3 cut(s)	475, 507, 586
DpnI	GATC	5 cut(s)	200, 695, 714, 947, 1038
DpnII	GATC	5 cut(s)	198, 693, 712, 945, 1036
EaeI	YGGCCR	3 cut(s)	33, 675, 879
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
Eco130I	CCWWGG	4 cut(s)	36, 457, 919, 1044
Eco24I	GRGCYC	3 cut(s)	563, 898, 960
Eco81I	CCTNAGG	1 cut(s)	586
EcoO109I	RGGNCCY	2 cut(s)	560, 833
EcoRII	CCWGG	3 cut(s)	194, 391, 812
EcoT14I	CCWWGG	4 cut(s)	36, 457, 919, 1044
EcoT38I	GRGCYC	3 cut(s)	563, 898, 960
ErhI	CCWWGG	4 cut(s)	36, 457, 919, 1044
Esp3I	CGTCTC	1 cut(s)	983
FaeI	CATG	7 cut(s)	40, 106, 309, 442, 461, 751, 1043
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FatI	CATG	7 cut(s)	36, 102, 305, 438, 457, 747, 1039
FauI	CCCGC	1 cut(s)	947
FauNDI	CATATG	1 cut(s)	502
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	443, 752, 1076, 1079
FokI	GGATG	1 cut(s)	187
FriOI	GRGCYC	3 cut(s)	563, 898, 960
Fsp4HI	GCNGC	4 cut(s)	443, 752, 1076, 1079
FspAI	RTGCGCAY	1 cut(s)	310
FspBI	CTAG	1 cut(s)	794
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	4 cut(s)	443, 752, 1076, 1079
GsuI	CTGGAG	2 cut(s)	453, 835
HaeIII	GGCC	5 cut(s)	35, 561, 677, 834, 881
HhaI	GCGC	1 cut(s)	311
Hin1II	CATG	7 cut(s)	40, 106, 309, 442, 461, 751, 1043
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	95, 368, 482
HphI	GGTGA	3 cut(s)	26, 418, 491
Hpy166II	GTNNAC	1 cut(s)	1087
Hpy188I	TCNGA	4 cut(s)	100, 362, 510, 825
Hpy188III	TCNNGA	2 cut(s)	220, 432
Hpy8I	GTNNAC	1 cut(s)	1087
HpyCH4III	ACNGT	2 cut(s)	418, 1103
HpyCH4IV	ACGT	2 cut(s)	843, 1107
HpyCH4V	TGCA	9 cut(s)	62, 254, 305, 350, 374, 791, 1075, 1081, 1087
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 707, 1040, 1084
HpyF3I	CTNAG	3 cut(s)	475, 507, 586
HpySE526I	ACGT	2 cut(s)	843, 1107
Hsp92II	CATG	7 cut(s)	40, 106, 309, 442, 461, 751, 1043
HspAI	GCGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	198, 693, 712, 945, 1036
LmnI	GCTCC	4 cut(s)	434, 542, 646, 870
Lsp1109I	GCAGC	3 cut(s)	429, 1065, 1087
MaeI	CTAG	1 cut(s)	794
MaeII	ACGT	2 cut(s)	843, 1107
MaeIII	GTNAC	1 cut(s)	1103
MalI	GATC	5 cut(s)	200, 695, 714, 947, 1038
MboI	GATC	5 cut(s)	198, 693, 712, 945, 1036
MboII	GAAGA	4 cut(s)	295, 793, 801, 991
MhlI	GDGCHC	4 cut(s)	563, 898, 960, 1089
MlsI	TGGCCA	3 cut(s)	35, 677, 881
MluCI	AATT	5 cut(s)	489, 529, 631, 777, 911
MluNI	TGGCCA	3 cut(s)	35, 677, 881
MlyI	GAGTC	1 cut(s)	491
MnlI	CCTC	7 cut(s)	120, 776, 815, 846, 878, 898, 988
Mox20I	TGGCCA	3 cut(s)	35, 677, 881
MscI	TGGCCA	3 cut(s)	35, 677, 881
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	4 cut(s)	662, 664, 701, 875
Msp20I	TGGCCA	3 cut(s)	35, 677, 881
MspA1I	CMGCKG	1 cut(s)	1078
MspR9I	CCNGG	3 cut(s)	196, 393, 814
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	3 cut(s)	196, 393, 814
MwoI	GCNNNNNNNGC	4 cut(s)	164, 707, 1040, 1084
NcoI	CCATGG	2 cut(s)	36, 457
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	5 cut(s)	198, 693, 712, 945, 1036
NlaIII	CATG	7 cut(s)	40, 106, 309, 442, 461, 751, 1043
NlaIV	GGNNCC	3 cut(s)	436, 561, 562
NmuCI	GTSAC	1 cut(s)	1103
NsbI	TGCGCA	1 cut(s)	310
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PctI	GAATGC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	95, 368
PfoI	TCCNGGA	1 cut(s)	812
PkrI	GCNGC	4 cut(s)	444, 753, 1077, 1080
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	844
Psp6I	CCWGG	3 cut(s)	194, 391, 812
PspGI	CCWGG	3 cut(s)	194, 391, 812
PspN4I	GGNNCC	3 cut(s)	436, 561, 562
PspOMI	GGGCCC	1 cut(s)	559
PspPI	GGNCC	3 cut(s)	559, 560, 833
PstI	CTGCAG	1 cut(s)	1077
PvuII	CAGCTG	1 cut(s)	1078
RseI	CAYNNNNRTG	4 cut(s)	662, 664, 701, 875
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	4 cut(s)	443, 752, 1076, 1079
Sau3AI	GATC	5 cut(s)	198, 693, 712, 945, 1036
Sau96I	GGNCC	3 cut(s)	559, 560, 833
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	3 cut(s)	196, 393, 814
SduI	GDGCHC	4 cut(s)	563, 898, 960, 1089
SfcI	CTRYAG	1 cut(s)	1073
SmiMI	CAYNNNNRTG	4 cut(s)	662, 664, 701, 875
SmlI	CTYRAG	1 cut(s)	902
SmoI	CTYRAG	1 cut(s)	902
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	5 cut(s)	489, 529, 631, 777, 911
SsiI	CCGC	2 cut(s)	751, 954
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	3 cut(s)	194, 391, 812
StyI	CCWWGG	4 cut(s)	36, 457, 919, 1044
TaaI	ACNGT	2 cut(s)	418, 1103
TaiI	ACGT	2 cut(s)	846, 1110
TaqI	TCGA	2 cut(s)	93, 290
TasI	AATT	5 cut(s)	489, 529, 631, 777, 911
TauI	GCSGC	1 cut(s)	754
TfiI	GAWTC	2 cut(s)	95, 368
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	500, 1108
TseFI	GTSAC	1 cut(s)	1103
TseI	GCWGC	3 cut(s)	442, 1075, 1078
Tsp45I	GTSAC	1 cut(s)	1103
TspDTI	ATGAA	4 cut(s)	83, 119, 438, 595
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	2 cut(s)	500, 1108
VneI	GTGCAC	1 cut(s)	1085
XapI	RAATTY	4 cut(s)	489, 529, 631, 777
XceI	RCATGY	1 cut(s)	309
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.