Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Forward (+)

19420829 .. 19424696

Gene Structure 3868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g16830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTGCCTTTAGCGCCTACATGCCATTCATGGCCATGGTGTTGGTCCAAGCGAGCTATGCAGGAATGAACATTATTTCAAAGCTTGCTATTGAATCTGACATGGACCCTCTTGTTCTTGTTGCTTATCGTCAAGTTTTCGCGGCCGTTGCCATTGCTCCCTTAGCTTATTTGTTGGAATGGAAAACAAGACCCAAGATCACATTGGCTATTCTTTTCCAGACTTTTCTGTGCTCATTAACTGGGGCCACTGCAAATCAGGTTTTTTATTTTCTCGGTTTGAAGTCTTCGACCGCAACGATTGCATGCGCATTGACAAACACACTTCCAGCCATGACATTTATCCTTGCAGTCATTTTCAGACAAGAATCTGCAAAGCTCAAGAGCAAACCAGGGCTATCTAAGGTGATGGGAACAATTGTGTGTGTATCTGGAGCTATGTTACTTTCATTTTACCATGGACACATCATTGGTCTAAGTGAGTCCAAAATTCACTGGACTTATGCTCAGAGAATGGGAGAGGCAAGTTCCAGCACCAAATCAAGCTCCTTTATAGGCCCCCTATTTGTCATCTTAAGCACCTTAGGTTGGGCATTCTGGTTCATAATCCAAGCTAGAGTTGGGGAAAGCTTTCCAGCTCCTTATACAAGCACCACATTGATGTGTTTGATGGCCAGCTTTGAGTGCGGGATCATTGCTGTAATTGCTGATCACAAAGTGGCTTCATGGTCGCTAAAAGATCCCACGAGACTTATTGCATCCCTCTATGCTGGAATTATGGGTTCTGCACTAGCATTCTTCCTCTCTTCATGGAGTATTCAGCAAAAAGGCCCTCTTTACGTGTCGGTGTTTAGTCCCTTGCTCCTCATTATTGTTGCCATTGCAAGCTGGGCTTTGCTTGAGGAGAAATTATACGTTGGAACGTATAATAAGGAGACGAAGGATGAGAAGCCAGCAAAAGCAACAGGCATGACAAATATGACAGATCAGGCCAAGGCTTATGAGAAAAACGACTTGGAGCTGCAGCTGCAAGGGCATTCGGAAAGCAACCGTGACGTTATGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

356

Amino Acids

38.82

Weight (kDa)

8.66

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	310
AccII	CGCG	1 cut(s)	143
AciI	CCGC	3 cut(s)	143, 294, 687
AclWI	GGATC	2 cut(s)	698, 734
AcoI	YGGCCR	3 cut(s)	33, 144, 672
AcsI	RAATTY	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	588
AflII	CTTAAG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	840
AgsI	TTSAA	3 cut(s)	81, 95, 283
AjnI	CCWGG	1 cut(s)	391
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	2 cut(s)	742, 929
AlwI	GGATC	2 cut(s)	698, 734
AoxI	GGCC	7 cut(s)	33, 144, 246, 556, 672, 829, 990
ApeKI	GCWGC	4 cut(s)	5, 1021, 1024, 1027
ApoI	RAATTY	1 cut(s)	489
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	2 cut(s)	17, 311
AspS9I	GGNCC	5 cut(s)	46, 106, 246, 557, 830
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	46, 106
AxyI	CCTNAGG	1 cut(s)	583
BalI	TGGCCA	2 cut(s)	35, 674
BauI	CACGAG	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	1008, 1014, 1036
BccI	CCATC	2 cut(s)	403, 664
BceAI	ACGGC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	393
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	2 cut(s)	742, 929
BfaI	CTAG	2 cut(s)	615, 791
BfmI	CTRYAG	1 cut(s)	1022
BfoI	RGCGCY	1 cut(s)	18
BfrI	CTTAAG	1 cut(s)	574
BisI	GCNGC	5 cut(s)	6, 144, 1022, 1025, 1028
BlsI	GCNGC	5 cut(s)	7, 145, 1023, 1026, 1029
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	46, 106
BmgT120I	GGNCC	5 cut(s)	46, 106, 246, 557, 830
BmiI	GGNNCC	3 cut(s)	108, 247, 559
BmrFI	CCNGG	1 cut(s)	393
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	767
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	453
Bpu10I	CCTNAGC	1 cut(s)	163
BpuEI	CTTGAG	2 cut(s)	365, 920
BsaAI	YACGTR	1 cut(s)	841
BsaJI	CCNNGG	4 cut(s)	36, 392, 457, 993
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse1I	ACTGG	2 cut(s)	247, 500
Bse21I	CCTNAGG	1 cut(s)	583
Bse3DI	GCAATG	3 cut(s)	153, 693, 879
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	36, 392, 457, 993
BseGI	GGATG	2 cut(s)	758, 949
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	3 cut(s)	153, 693, 879
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	247, 500
BseRI	GAGGAG	2 cut(s)	854, 917
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	1008, 1014, 1036
BseYI	CCCAGC	1 cut(s)	888
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	2 cut(s)	147, 294
BshFI	GGCC	7 cut(s)	35, 146, 248, 558, 674, 831, 992
BsiEI	CGRYCG	2 cut(s)	147, 294
BsiHKAI	GWGCWC	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	840
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	2 cut(s)	742, 929
BsmBI	CGTCTC	1 cut(s)	929
BsmFI	GGGAC	1 cut(s)	840
BsmI	GAATGC	3 cut(s)	593, 794, 1036
BsnI	GGCC	7 cut(s)	35, 146, 248, 558, 674, 831, 992
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	198, 690, 709, 739, 985
Bsp19I	CCATGG	2 cut(s)	36, 457
BspACI	CCGC	3 cut(s)	143, 294, 687
BspANI	GGCC	7 cut(s)	35, 146, 248, 558, 674, 831, 992
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	108, 247, 559
BspMAI	CTGCAG	1 cut(s)	1026
BspPI	GGATC	2 cut(s)	698, 734
BspTI	CTTAAG	1 cut(s)	574
BsrDI	GCAATG	3 cut(s)	153, 693, 879
BsrI	ACTGG	2 cut(s)	247, 500
BssECI	CCNNGG	4 cut(s)	36, 392, 457, 993
BssMI	GATC	5 cut(s)	198, 690, 709, 739, 985
BssSI	CACGAG	1 cut(s)	745
BssT1I	CCWWGG	3 cut(s)	36, 457, 993
Bst2BI	CACGAG	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	1052
Bst6I	CTCTTC	1 cut(s)	811
BstAFI	CTTAAG	1 cut(s)	574
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	841
BstC8I	GCNNGC	6 cut(s)	55, 87, 307, 676, 886, 954
BstDEI	CTNAG	5 cut(s)	163, 402, 476, 507, 583
BstDSI	CCRYGG	2 cut(s)	36, 457
BstF5I	GGATG	2 cut(s)	758, 949
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 311
BstKTI	GATC	5 cut(s)	201, 693, 712, 742, 988
BstMAI	GTCTC	2 cut(s)	742, 929
BstMBI	GATC	5 cut(s)	198, 690, 709, 739, 985
BstMCI	CGRYCG	2 cut(s)	147, 294
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	2 cut(s)	25, 309
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	1 cut(s)	1022
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	1008, 1014, 1036
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	739
BstZI	CGGCCG	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	583
BsuRI	GGCC	7 cut(s)	35, 146, 248, 558, 674, 831, 992
BtgI	CCRYGG	2 cut(s)	36, 457
BtsCI	GGATG	2 cut(s)	758, 949
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 493
Cac8I	GCNNGC	6 cut(s)	55, 87, 307, 676, 886, 954
CfoI	GCGC	2 cut(s)	17, 311
Cfr13I	GGNCC	5 cut(s)	46, 106, 246, 557, 830
DdeI	CTNAG	5 cut(s)	163, 402, 476, 507, 583
DpnI	GATC	5 cut(s)	200, 692, 711, 741, 987
DpnII	GATC	5 cut(s)	198, 690, 709, 739, 985
DraIII	CACNNNGTG	1 cut(s)	718
EaeI	YGGCCR	3 cut(s)	33, 144, 672
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	811
EclXI	CGGCCG	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	36, 457, 993
Eco47I	GGWCC	2 cut(s)	46, 106
Eco52I	CGGCCG	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	583
EcoO109I	RGGNCCY	2 cut(s)	557, 830
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	3 cut(s)	36, 457, 993
ErhI	CCWWGG	3 cut(s)	36, 457, 993
Esp3I	CGTCTC	1 cut(s)	929
FalI	AAGNNNNNCTT	4 cut(s)	819, 851, 877, 909
FaqI	GGGAC	1 cut(s)	840
FauI	CCCGC	1 cut(s)	680
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	5 cut(s)	6, 144, 1022, 1025, 1028
FokI	GGATG	2 cut(s)	745, 956
Fsp4HI	GCNGC	5 cut(s)	6, 144, 1022, 1025, 1028
FspAI	RTGCGCAY	1 cut(s)	310
FspBI	CTAG	2 cut(s)	615, 791
FspI	TGCGCA	1 cut(s)	310
GlaI	GCGC	2 cut(s)	16, 310
GluI	GCNGC	5 cut(s)	6, 144, 1022, 1025, 1028
GsaI	CCCAGC	1 cut(s)	892
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	7 cut(s)	35, 146, 248, 558, 674, 831, 992
HhaI	GCGC	2 cut(s)	17, 311
Hin6I	GCGC	2 cut(s)	15, 309
HinP1I	GCGC	2 cut(s)	15, 309
HindIII	AAGCTT	2 cut(s)	83, 628
HinfI	GANTC	3 cut(s)	95, 368, 482
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	100, 362, 510, 1042
Hpy188III	TCNNGA	3 cut(s)	220, 382, 432
HpyAV	CCTTC	1 cut(s)	934
HpyCH4III	ACNGT	1 cut(s)	1052
HpyCH4IV	ACGT	4 cut(s)	840, 915, 923, 1056
HpyF3I	CTNAG	5 cut(s)	163, 402, 476, 507, 583
HpySE526I	ACGT	4 cut(s)	840, 915, 923, 1056
HspAI	GCGC	2 cut(s)	15, 309
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	198, 690, 709, 739, 985
LmnI	GCTCC	6 cut(s)	163, 434, 551, 643, 867, 1018
Lsp1109I	GCAGC	3 cut(s)	1008, 1014, 1036
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	2 cut(s)	615, 791
MaeII	ACGT	4 cut(s)	840, 915, 923, 1056
MaeIII	GTNAC	2 cut(s)	441, 1052
MalI	GATC	5 cut(s)	200, 692, 711, 741, 987
MboI	GATC	5 cut(s)	198, 690, 709, 739, 985
MboII	GAAGA	3 cut(s)	279, 790, 798
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	2 cut(s)	35, 674
MluCI	AATT	5 cut(s)	417, 489, 702, 774, 908
MluNI	TGGCCA	2 cut(s)	35, 674
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	156, 898
MnlI	CCTC	7 cut(s)	120, 514, 773, 812, 843, 875, 895
Mox20I	TGGCCA	2 cut(s)	35, 674
MroXI	GAANNNNTTC	1 cut(s)	630
MscI	TGGCCA	2 cut(s)	35, 674
MseI	TTAA	2 cut(s)	239, 575
MslI	CAYNNNNRTG	3 cut(s)	35, 659, 661
Msp20I	TGGCCA	2 cut(s)	35, 674
MspA1I	CMGCKG	1 cut(s)	1027
MspCI	CTTAAG	1 cut(s)	574
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	417
Mva1269I	GAATGC	3 cut(s)	593, 794, 1036
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	143
NcoI	CCATGG	2 cut(s)	36, 457
NdeII	GATC	5 cut(s)	198, 690, 709, 739, 985
NlaIV	GGNNCC	3 cut(s)	108, 247, 559
NmuCI	GTSAC	1 cut(s)	1052
NsbI	TGCGCA	1 cut(s)	310
NspI	RCATGY	2 cut(s)	25, 309
PaeI	GCATGC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PctI	GAATGC	3 cut(s)	593, 794, 1036
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	95, 368
PkrI	GCNGC	5 cut(s)	7, 145, 1023, 1026, 1029
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	841
Psp6I	CCWGG	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	888
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	108, 247, 559
PspPI	GGNCC	5 cut(s)	46, 106, 246, 557, 830
PstI	CTGCAG	1 cut(s)	1026
PsuI	RGATCY	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	1027
RseI	CAYNNNNRTG	3 cut(s)	35, 659, 661
SaqAI	TTAA	2 cut(s)	239, 575
SatI	GCNGC	5 cut(s)	6, 144, 1022, 1025, 1028
Sau3AI	GATC	5 cut(s)	198, 690, 709, 739, 985
Sau96I	GGNCC	5 cut(s)	46, 106, 246, 557, 830
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	1022
SinI	GGWCC	2 cut(s)	46, 106
SmiMI	CAYNNNNRTG	3 cut(s)	35, 659, 661
SmlI	CTYRAG	3 cut(s)	380, 574, 899
SmoI	CTYRAG	3 cut(s)	380, 574, 899
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	5 cut(s)	417, 489, 702, 774, 908
SsiI	CCGC	3 cut(s)	143, 294, 687
SspMI	CTAG	2 cut(s)	615, 791
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	3 cut(s)	36, 457, 993
TaaI	ACNGT	1 cut(s)	1052
TaiI	ACGT	4 cut(s)	843, 918, 926, 1059
TaqI	TCGA	1 cut(s)	290
TasI	AATT	5 cut(s)	417, 489, 702, 774, 908
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	95, 368
Tru1I	TTAA	2 cut(s)	239, 575
Tru9I	TTAA	2 cut(s)	239, 575
TscAI	CASTG	2 cut(s)	256, 500
TseFI	GTSAC	1 cut(s)	1052
TseI	GCWGC	4 cut(s)	5, 1021, 1024, 1027
Tsp45I	GTSAC	1 cut(s)	1052
TspDTI	ATGAA	6 cut(s)	19, 83, 438, 592, 714, 798
TspRI	CASTG	2 cut(s)	256, 500
Vha464I	CTTAAG	1 cut(s)	574
VpaK11BI	GGWCC	2 cut(s)	46, 106
XapI	RAATTY	1 cut(s)	489
XceI	RCATGY	2 cut(s)	25, 309
XcmI	CCANNNNNNNNNTGG	2 cut(s)	202, 617
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	615, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.