Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Reverse (-)

1835883 .. 1840180

Gene Structure 4298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0023100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCGGTTCAAGATGTGCAATTTGTTCAATTGGGTAGTGATTGTGGCTGCGTTTTTGGTTCTGGGTTCGATCAATGTCTACGCATTTGGTTCTCCTTCTTCTTCTTCTTCGGAGACCACCATGCACACTAACAATTGGGCCGTTCTGGTCTGCACCTCTCGCTTCTGGTTTAATTATCGACACATGGCCAATACTTTATCCCTGTACAGGACGGTTAAGCGACTTGGAATACCTGATGAGAGGATAATACTTATGCTGGCAGATGACATGGCCTGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCACAGACTCAACTTGTATGGAGATAATGTTGAGGTAGATTATCGAGGTTATGAAGTGACGGTTGAAAATTTTTTACGTGTATTAACTGGGCGCCATGAGACTGCTGTTCCAAGATCTAAGCGTCTTTTAAGTGATGAAGGAAGCCACATTCTTTTGTATATGACTGGACATGGAGGAGATGAGTTTTTAAAATTTCAAGACTCAGAAGAGCTCCAGAGTCATGATTTAGCTGATGCTGTAAAACAAATGAAAGAAAAGCGTAGGTTCAAGGAGCTGCTGATAATGGTGGACACGTGCCAGGCTGCCACCCTCTTCTCTCAGCTTCAATCACCGGGTGTTTTGGCCATTGGAAGTAGCATGAAAGGAGAAAATTCATACTCGCATCACTTGGACTCTGATGTTGGTGTCTCTGTTGTGGATCGTTTTACATTTTACACTCTTGCATTCTTTGAGAGGCTAAATATGTATGACAATGCTTCCGTGAGCAGTCTATTTAATTCGTATCACCCAAGCTTGTTGATGTCAACTGCATATTACCGAACAGATCTATACCAGCGTCGCCTTGAAGAGGTACCTGTGACAAACTTCTTTGGATCAGTCATGGAAACAATACATACTGATTCAGCTTATAAAGCCCTTTCAAGGAAAAGTAACAGCAAAGCTGAAATCAATACGCCCTTTGATCAGTCAGCCAATGCCGATAAAAGAACTTTGGCAGATTCAAATGGTCAGGATCAATTCAGTGACCTGAAAAAAGAGGATCAACAAGGTGCTTTCAGACATTTGTGGAACACGTTGAATGACAAGGTCGGAAAAATTGAAGATGTGGATTCATTTGTGCAGTACGGTTTGCTAGCCATGGTTCCACTATTGCTACTTCCCACATGGTTATCGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

406

Amino Acids

46.37

Weight (kDa)

6.19

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C13	PF01650	45 - 259	4.4e-45	Peptidase C13 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
Acc65I	GGTACC	1 cut(s)	892
AccB1I	GGYRCC	2 cut(s)	411, 892
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	1216
AciI	CCGC	2 cut(s)	4, 1216
AclWI	GGATC	4 cut(s)	747, 922, 1062, 1089
AcoI	YGGCCR	2 cut(s)	186, 663
AcsI	RAATTY	3 cut(s)	388, 512, 691
AcvI	CACGTG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	412
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	4 cut(s)	206, 293, 894, 1166
AfiI	CCNNNNNNNGG	3 cut(s)	207, 889, 963
AflIII	ACRYGT	3 cut(s)	397, 612, 1113
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	7 cut(s)	532, 551, 595, 643, 834, 947, 983
AluI	AGCT	7 cut(s)	532, 551, 595, 643, 834, 947, 983
Alw21I	GWGCWC	1 cut(s)	534
Alw26I	GTCTC	3 cut(s)	107, 413, 733
AlwI	GGATC	4 cut(s)	747, 922, 1062, 1089
AoxI	GGCC	4 cut(s)	138, 186, 270, 663
ApeKI	GCWGC	3 cut(s)	47, 595, 623
ApoI	RAATTY	3 cut(s)	388, 512, 691
Asp718I	GGTACC	1 cut(s)	892
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	642, 818
AsuNHI	GCTAGC	1 cut(s)	1174
BalI	TGGCCA	2 cut(s)	188, 665
BanI	GGYRCC	2 cut(s)	411, 892
BanII	GRGCYC	1 cut(s)	534
BbrPI	CACGTG	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	3 cut(s)	34, 582, 610
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	620
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	3 cut(s)	107, 413, 733
BfaI	CTAG	2 cut(s)	282, 1175
BfoI	RGCGCY	1 cut(s)	415
BglII	AGATCT	2 cut(s)	434, 865
BisI	GCNGC	3 cut(s)	48, 596, 624
BlsI	GCNGC	3 cut(s)	49, 597, 625
Bme1390I	CCNGG	2 cut(s)	620, 654
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	3 cut(s)	413, 894, 1185
BmrFI	CCNGG	2 cut(s)	620, 654
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	544, 712
BmtI	GCTAGC	1 cut(s)	1178
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	518
BpuMI	CCSGG	1 cut(s)	654
BsaAI	YACGTR	2 cut(s)	398, 615
BsaHI	GRCGYC	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 889, 963
Bse1I	ACTGG	2 cut(s)	412, 490
BseBI	CCWGG	1 cut(s)	620
BseDI	CCNNGG	1 cut(s)	1179
BseLI	CCNNNNNNNGG	3 cut(s)	207, 889, 963
BseMII	CTCAG	2 cut(s)	537, 653
BseNI	ACTGG	2 cut(s)	412, 490
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	34, 582, 610
BsgI	GTGCAG	2 cut(s)	136, 1181
Bsh1236I	CGCG	1 cut(s)	1216
BshFI	GGCC	4 cut(s)	140, 188, 272, 665
BshNI	GGYRCC	2 cut(s)	411, 892
BsiHKAI	GWGCWC	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	653
BslI	CCNNNNNNNGG	3 cut(s)	207, 889, 963
BsmAI	GTCTC	3 cut(s)	107, 413, 733
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	4 cut(s)	140, 188, 272, 665
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
Bsp19I	CCATGG	1 cut(s)	1179
BspACI	CCGC	2 cut(s)	4, 1216
BspANI	GGCC	4 cut(s)	140, 188, 272, 665
BspCNI	CTCAG	2 cut(s)	536, 652
BspFNI	CGCG	1 cut(s)	1216
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	413, 894, 1185
BspOI	GCTAGC	1 cut(s)	1178
BspPI	GGATC	4 cut(s)	747, 922, 1062, 1089
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	2 cut(s)	411, 892
BspTNI	GGTCTC	1 cut(s)	107
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	412, 490
BssECI	CCNNGG	1 cut(s)	1179
BssMI	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
BssNI	GRCGYC	1 cut(s)	412
BssT1I	CCWWGG	1 cut(s)	1179
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	3 cut(s)	214, 382, 1169
Bst6I	CTCTTC	3 cut(s)	522, 638, 882
BstACI	GRCGYC	1 cut(s)	412
BstAUI	TGTACA	1 cut(s)	204
BstBAI	YACGTR	2 cut(s)	398, 615
BstC8I	GCNNGC	2 cut(s)	258, 1176
BstDEI	CTNAG	3 cut(s)	438, 523, 639
BstDSI	CCRYGG	1 cut(s)	1179
BstENI	CCTNNNNNAGG	1 cut(s)	887
BstFNI	CGCG	1 cut(s)	1216
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	8 cut(s)	72, 437, 742, 868, 917, 1006, 1057, 1084
BstMAI	GTCTC	3 cut(s)	107, 413, 733
BstMBI	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 278, 953
BstNI	CCWGG	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	618, 652
BstUI	CGCG	1 cut(s)	1216
BstV1I	GCAGC	3 cut(s)	34, 582, 610
BstX2I	RGATCY	2 cut(s)	434, 865
BstYI	RGATCY	2 cut(s)	434, 865
BsuRI	GGCC	4 cut(s)	140, 188, 272, 665
BtgI	CCRYGG	1 cut(s)	1179
BtsIMutI	CAGTG	1 cut(s)	1069
Cac8I	GCNNGC	2 cut(s)	258, 1176
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	138
CseI	GACGC	2 cut(s)	431, 866
Csp6I	GTAC	4 cut(s)	205, 292, 893, 1165
CviQI	GTAC	4 cut(s)	205, 292, 893, 1165
DdeI	CTNAG	3 cut(s)	438, 523, 639
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	8 cut(s)	71, 436, 741, 867, 916, 1005, 1056, 1083
DpnII	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
DraI	TTTAAA	1 cut(s)	510
DraIII	CACNNNGTG	1 cut(s)	656
EaeI	YGGCCR	2 cut(s)	186, 663
Eam1104I	CTCTTC	3 cut(s)	522, 638, 882
EarI	CTCTTC	3 cut(s)	522, 638, 882
Ecl136II	GAGCTC	1 cut(s)	532
Eco130I	CCWWGG	1 cut(s)	1179
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	532
Eco72I	CACGTG	1 cut(s)	615
EcoICRI	GAGCTC	1 cut(s)	532
EcoNI	CCTNNNNNAGG	1 cut(s)	887
EcoRII	CCWGG	1 cut(s)	618
EcoT14I	CCWWGG	1 cut(s)	1179
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
ErhI	CCWWGG	1 cut(s)	1179
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	48, 596, 624
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	3 cut(s)	48, 596, 624
FspBI	CTAG	2 cut(s)	282, 1175
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	3 cut(s)	48, 596, 624
GsuI	CTGGAG	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	4 cut(s)	140, 188, 272, 665
HapII	CCGG	1 cut(s)	653
HgaI	GACGC	2 cut(s)	431, 866
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	412
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HindIII	AAGCTT	1 cut(s)	832
HinfI	GANTC	7 cut(s)	327, 521, 538, 713, 941, 1040, 1151
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	2 cut(s)	642, 818
Hpy166II	GTNNAC	3 cut(s)	79, 610, 846
Hpy188I	TCNGA	5 cut(s)	112, 526, 718, 1100, 1133
Hpy188III	TCNNGA	5 cut(s)	10, 518, 535, 542, 1052
Hpy8I	GTNNAC	3 cut(s)	79, 610, 846
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	2 cut(s)	105, 452
HpyCH4III	ACNGT	3 cut(s)	214, 382, 1169
HpyCH4IV	ACGT	3 cut(s)	397, 614, 1115
HpyCH4V	TGCA	6 cut(s)	18, 124, 153, 764, 851, 1162
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 278, 953
HpyF3I	CTNAG	3 cut(s)	438, 523, 639
HpySE526I	ACGT	3 cut(s)	397, 614, 1115
Hsp92I	GRCGYC	1 cut(s)	412
HspAI	GCGC	1 cut(s)	412
KasI	GGCGCC	1 cut(s)	411
KpnI	GGTACC	1 cut(s)	896
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	2 cut(s)	537, 592
Lsp1109I	GCAGC	3 cut(s)	34, 582, 610
LweI	GCATC	2 cut(s)	544, 712
MaeI	CTAG	2 cut(s)	282, 1175
MaeII	ACGT	3 cut(s)	397, 614, 1115
MaeIII	GTNAC	4 cut(s)	376, 898, 971, 1064
MalI	GATC	8 cut(s)	71, 436, 741, 867, 916, 1005, 1056, 1083
MboI	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
MboII	GAAGA	8 cut(s)	90, 93, 96, 99, 539, 625, 899, 1154
MfeI	CAATTG	2 cut(s)	28, 133
MflI	RGATCY	2 cut(s)	434, 865
MhlI	GDGCHC	1 cut(s)	534
MlsI	TGGCCA	2 cut(s)	188, 665
MluNI	TGGCCA	2 cut(s)	188, 665
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	4 cut(s)	321, 515, 547, 707
MmeI	TCCRAC	1 cut(s)	1111
MnlI	CCTC	9 cut(s)	166, 234, 346, 359, 488, 641, 768, 883, 1072
Mox20I	TGGCCA	2 cut(s)	188, 665
MscI	TGGCCA	2 cut(s)	188, 665
MseI	TTAA	7 cut(s)	171, 216, 309, 404, 449, 509, 816
Msp20I	TGGCCA	2 cut(s)	188, 665
MspI	CCGG	1 cut(s)	653
MspR9I	CCNGG	2 cut(s)	620, 654
MunI	CAATTG	2 cut(s)	28, 133
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	620
MvnI	CGCG	1 cut(s)	1216
MwoI	GCNNNNNNNGC	3 cut(s)	159, 278, 953
NarI	GGCGCC	1 cut(s)	412
NciI	CCSGG	1 cut(s)	654
NcoI	CCATGG	1 cut(s)	1179
NdeII	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
NheI	GCTAGC	1 cut(s)	1174
NlaIV	GGNNCC	3 cut(s)	413, 894, 1185
NmuCI	GTSAC	3 cut(s)	376, 898, 1064
PagI	TCATGA	1 cut(s)	541
PciSI	GCTCTTC	1 cut(s)	522
PctI	GAATGC	1 cut(s)	764
PfeI	GAWTC	3 cut(s)	941, 1040, 1151
PflFI	GACNNNGTC	1 cut(s)	1127
PkrI	GCNGC	3 cut(s)	49, 597, 625
PleI	GAGTC	4 cut(s)	321, 515, 546, 707
PluTI	GGCGCC	1 cut(s)	415
PmaCI	CACGTG	1 cut(s)	615
PmlI	CACGTG	1 cut(s)	615
PpsI	GAGTC	4 cut(s)	321, 515, 546, 707
Ppu21I	YACGTR	2 cut(s)	398, 615
PsiI	TTATAA	1 cut(s)	951
Psp124BI	GAGCTC	1 cut(s)	534
Psp6I	CCWGG	1 cut(s)	618
PspCI	CACGTG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	3 cut(s)	413, 894, 1185
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	2 cut(s)	434, 865
PsyI	GACNNNGTC	1 cut(s)	1127
RsaI	GTAC	4 cut(s)	206, 293, 894, 1166
RsaNI	GTAC	4 cut(s)	205, 292, 893, 1165
SacI	GAGCTC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	7 cut(s)	171, 216, 309, 404, 449, 509, 816
SatI	GCNGC	3 cut(s)	48, 596, 624
Sau3AI	GATC	8 cut(s)	69, 434, 739, 865, 914, 1003, 1054, 1081
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	4 cut(s)	321, 515, 547, 707
ScrFI	CCNGG	2 cut(s)	620, 654
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	544, 712
SfoI	GGCGCC	1 cut(s)	413
SsiI	CCGC	2 cut(s)	4, 1216
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	282, 1175
SstI	GAGCTC	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	618, 652
StyI	CCWWGG	1 cut(s)	1179
TaaI	ACNGT	3 cut(s)	214, 382, 1169
TaiI	ACGT	3 cut(s)	400, 617, 1118
TaqI	TCGA	3 cut(s)	68, 178, 364
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	941, 1040, 1151
Tru1I	TTAA	7 cut(s)	171, 216, 309, 404, 449, 509, 816
Tru9I	TTAA	7 cut(s)	171, 216, 309, 404, 449, 509, 816
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	3 cut(s)	376, 898, 1064
TseI	GCWGC	3 cut(s)	47, 595, 623
Tsp45I	GTSAC	3 cut(s)	376, 898, 1064
TspDTI	ATGAA	7 cut(s)	330, 387, 471, 584, 684, 695, 1143
TspGWI	ACGGA	1 cut(s)	790
TspRI	CASTG	1 cut(s)	1069
Tth111I	GACNNNGTC	1 cut(s)	1127
XagI	CCTNNNNNAGG	1 cut(s)	887
XapI	RAATTY	3 cut(s)	388, 512, 691
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	282, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.