Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Forward (+)

42682551 .. 42685912

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGCATAAGCCCAAGTGTTGCAAGCAATGCAATCAATCCTCCAACGGCTTCTCTTTTCTCTTATTTTCACGCAAAAGATTCTCTTCACCTTTCTGTTTCACCTTTCCCTTATATAATCCCAATACCTCATTTCTCAGTCTCCAAATCTCTCTAGCTAGCTTTCTTTCTGTAGCTTCTTTGTTCTGCTGCTTCTGCAAATATATAGTACAAGTTAAGAAAGTACTATATATTTCAGAAAACGCAATGGCAAATGGTTATGGTAATAGCTATATGCCATTTGTGGCCATGGTGTTTGTGCAAGTGTGCTATGCAGGAATGAATATCACTTCAAAGCTTGCTCTGGAGGCGGAGCTGAACCCTCTTATTCTTGTAGCTTATCGACAAATTTTCGCCACCGTAGCCTTAGCTCCTTTCGCTTATTGGATGGAATGGCAAACAAGACCCGAGATCACAATGCCTATCCTTTTCCAGATTTTCCTATGTTCCTTAACTGGAGCAACTGCAAACCAAGTTTTCTATTTTCTTGGATTGAACAAAACCACTCCAACCATTGCTTGTGCATTGACAAATACGCTCCCAGCTATGACATTTATCCTTGCAGTCCTTTTCAGACAAGAATCAGCAAAAATGAAGAGCAAGGCAGGGTTGGCTAAGGTGATGGGAACAGCAGTGTGTGTATGTGGAGCCATGATACTCTCATTTTACCATGGAAAAAACATTGGTATAGGTGAATCCAAAATTCACTGGAGTTATGCTCAGAGAATGGGACAGTCAAACTCAGGAAACAATGCCAACTCCTTTGTTGGCCCCCTTTTAGTCATCATCAGCACCTTAGGTTGGGCAATGTGGTTCATCATCCAAGCAACAGTAAGTGATATGTTTCCAGCTCCTTACACAAGCACTACATTGATGTGTTTCATGGCTAGTTTGGAGTGTGGGCTCATTGCTGTAATTGTCGAGCATAATGGACGTGCATGGTCATTGACCAATCCCATGAAGCTTACTGCGAGCCTCTATTCAGGGATTATGGGTTCTGCAGTAGCATTTTTCCTCACTTCATGGAGCATTCAGAGGAAAGGAGCTCTTTATGCGTCAGTGTTCAGCCCTTTGCTGCTCATTGTTGTGGCTGTTTCGAGTTGGGCTCTGCTTGATGAGAAATTATACCTGGGAACTGCTTTCGGATCGATCTTGATTGTGGCCGGGCTCTATTCTGTTCTTTGGGGGAAGACCAAGGAGACGGCTAAGCATGAGGGCAAAGAAACAGACGCAAATACAAAGCCAAATGCTGCTGCCAAGGAAATTGAGAAAAACGACTTGGAGCTGCAGCTGCCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

445

Amino Acids

48.96

Weight (kDa)

9.13

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	95 - 232	6.8e-16	EamA-like transporter family
EamA	PF00892	269 - 406	2.7e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	1189
AcoI	YGGCCR	2 cut(s)	282, 1197
AcsI	RAATTY	2 cut(s)	384, 738
AfaI	GTAC	2 cut(s)	207, 222
AfiI	CCNNNNNNNGG	1 cut(s)	837
AgsI	TTSAA	2 cut(s)	330, 532
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	1 cut(s)	1164
AjuI	GAANNNNNNNTTGG	2 cut(s)	1298, 1330
AloI	GAACNNNNNNTCC	2 cut(s)	1015, 1047
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	2 cut(s)	143, 1229
AlwI	GGATC	1 cut(s)	1189
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	3 cut(s)	282, 805, 1197
ApeKI	GCWGC	7 cut(s)	186, 1111, 1286, 1289, 1321, 1324, 1327
ApoI	RAATTY	2 cut(s)	384, 738
AspS9I	GGNCC	1 cut(s)	806
AsuC2I	CCSGG	1 cut(s)	1201
AsuHPI	GGTGA	4 cut(s)	78, 91, 667, 740
AsuNHI	GCTAGC	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	443
AxyI	CCTNAGG	1 cut(s)	832
BalI	TGGCCA	1 cut(s)	284
BanII	GRGCYC	4 cut(s)	942, 1084, 1144, 1206
BbsI	GAAGAC	1 cut(s)	1232
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	6 cut(s)	173, 1098, 1273, 1276, 1308, 1314
BccI	CCATC	2 cut(s)	418, 652
BceAI	ACGGC	2 cut(s)	61, 1254
BciT130I	CCWGG	1 cut(s)	1166
BcnI	CCSGG	1 cut(s)	1201
BcoDI	GTCTC	2 cut(s)	143, 1229
BfaI	CTAG	3 cut(s)	152, 156, 924
BfmI	CTRYAG	3 cut(s)	168, 1035, 1322
BisI	GCNGC	7 cut(s)	187, 1112, 1287, 1290, 1322, 1325, 1328
BlpI	GCTNAGC	1 cut(s)	1242
BlsI	GCNGC	7 cut(s)	188, 1113, 1288, 1291, 1323, 1326, 1329
BmcAI	AGTACT	1 cut(s)	222
Bme1390I	CCNGG	2 cut(s)	1166, 1201
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	806
BmiI	GGNNCC	2 cut(s)	685, 808
BmrFI	CCNGG	2 cut(s)	1166, 1201
BmtI	GCTAGC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	1232
BplI	GAGNNNNNCTC	4 cut(s)	739, 771, 1126, 1158
BpmI	CTGGAG	3 cut(s)	362, 513, 766
Bpu10I	CCTNAGC	2 cut(s)	403, 651
Bpu1102I	GCTNAGC	1 cut(s)	1242
BpuMI	CCSGG	1 cut(s)	1201
Bsa29I	ATCGAT	1 cut(s)	1184
BsaJI	CCNNGG	5 cut(s)	285, 706, 1165, 1230, 1293
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse1I	ACTGG	2 cut(s)	496, 749
Bse21I	CCTNAGG	1 cut(s)	832
Bse3DI	GCAATG	5 cut(s)	32, 249, 549, 849, 942
BseBI	CCWGG	1 cut(s)	1166
BseCI	ATCGAT	1 cut(s)	1184
BseDI	CCNNGG	5 cut(s)	285, 706, 1165, 1230, 1293
BseGI	GGATG	2 cut(s)	429, 855
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMI	GCAATG	5 cut(s)	32, 249, 549, 849, 942
BseMII	CTCAG	3 cut(s)	148, 770, 792
BseNI	ACTGG	2 cut(s)	496, 749
BseXI	GCAGC	6 cut(s)	173, 1098, 1273, 1276, 1308, 1314
BseYI	CCCAGC	1 cut(s)	577
BshFI	GGCC	3 cut(s)	284, 807, 1199
BshVI	ATCGAT	1 cut(s)	1184
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	1200
BslFI	GGGAC	1 cut(s)	780
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	2 cut(s)	143, 1229
BsmBI	CGTCTC	1 cut(s)	1229
BsmFI	GGGAC	1 cut(s)	780
BsmI	GAATGC	1 cut(s)	1065
BsnI	GGCC	3 cut(s)	284, 807, 1199
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	4 cut(s)	942, 1084, 1144, 1206
Bsp143I	GATC	3 cut(s)	447, 1181, 1185
Bsp1720I	GCTNAGC	1 cut(s)	1242
Bsp19I	CCATGG	2 cut(s)	285, 706
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	3 cut(s)	284, 807, 1199
BspCNI	CTCAG	3 cut(s)	147, 769, 791
BspDI	ATCGAT	1 cut(s)	1184
BspLI	GGNNCC	2 cut(s)	685, 808
BspMAI	CTGCAG	2 cut(s)	1039, 1326
BspOI	GCTAGC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	1189
BspQI	GCTCTTC	1 cut(s)	626
BsrDI	GCAATG	5 cut(s)	32, 249, 549, 849, 942
BsrI	ACTGG	2 cut(s)	496, 749
BssECI	CCNNGG	5 cut(s)	285, 706, 1165, 1230, 1293
BssMI	GATC	3 cut(s)	447, 1181, 1185
BssT1I	CCWWGG	4 cut(s)	285, 706, 1230, 1293
Bst2UI	CCWGG	1 cut(s)	1166
Bst4CI	ACNGT	3 cut(s)	397, 771, 868
Bst6I	CTCTTC	2 cut(s)	88, 626
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	4 cut(s)	23, 157, 336, 1009
BstDEI	CTNAG	7 cut(s)	134, 403, 651, 756, 778, 832, 1242
BstDSI	CCRYGG	2 cut(s)	285, 706
BstF5I	GGATG	2 cut(s)	429, 855
BstKTI	GATC	3 cut(s)	450, 1184, 1188
BstMAI	GTCTC	2 cut(s)	143, 1229
BstMBI	GATC	3 cut(s)	447, 1181, 1185
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 192, 344, 398, 413, 647, 1088, 1327
BstNI	CCWGG	1 cut(s)	1166
BstSCI	CCNGG	2 cut(s)	1164, 1199
BstSFI	CTRYAG	3 cut(s)	168, 1035, 1322
BstV1I	GCAGC	6 cut(s)	173, 1098, 1273, 1276, 1308, 1314
BstV2I	GAAGAC	1 cut(s)	1232
Bsu15I	ATCGAT	1 cut(s)	1184
Bsu36I	CCTNAGG	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	284, 807, 1199
BsuTUI	ATCGAT	1 cut(s)	1184
BtgI	CCRYGG	2 cut(s)	285, 706
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	2 cut(s)	429, 855
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	3 cut(s)	675, 742, 1101
Cac8I	GCNNGC	4 cut(s)	23, 157, 336, 1009
Cfr13I	GGNCC	1 cut(s)	806
ClaI	ATCGAT	1 cut(s)	1184
CseI	GACGC	2 cut(s)	1080, 1274
Csp6I	GTAC	2 cut(s)	206, 221
CviAII	CATG	8 cut(s)	286, 688, 707, 919, 975, 994, 1059, 1247
CviQI	GTAC	2 cut(s)	206, 221
DdeI	CTNAG	7 cut(s)	134, 403, 651, 756, 778, 832, 1242
DpnI	GATC	3 cut(s)	449, 1183, 1187
DpnII	GATC	3 cut(s)	447, 1181, 1185
EaeI	YGGCCR	2 cut(s)	282, 1197
Eam1104I	CTCTTC	2 cut(s)	88, 626
EarI	CTCTTC	2 cut(s)	88, 626
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	1082
Eco130I	CCWWGG	4 cut(s)	285, 706, 1230, 1293
Eco24I	GRGCYC	4 cut(s)	942, 1084, 1144, 1206
Eco53kI	GAGCTC	1 cut(s)	1082
Eco81I	CCTNAGG	1 cut(s)	832
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	1082
EcoRII	CCWGG	1 cut(s)	1164
EcoT14I	CCWWGG	4 cut(s)	285, 706, 1230, 1293
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	4 cut(s)	942, 1084, 1144, 1206
ErhI	CCWWGG	4 cut(s)	285, 706, 1230, 1293
Esp3I	CGTCTC	1 cut(s)	1229
FaeI	CATG	8 cut(s)	289, 691, 710, 922, 978, 997, 1062, 1250
FalI	AAGNNNNNCTT	4 cut(s)	67, 99, 1068, 1100
FaqI	GGGAC	1 cut(s)	780
FatI	CATG	8 cut(s)	285, 687, 706, 918, 974, 993, 1058, 1246
Fnu4HI	GCNGC	7 cut(s)	187, 1112, 1287, 1290, 1322, 1325, 1328
FokI	GGATG	2 cut(s)	436, 842
FriOI	GRGCYC	4 cut(s)	942, 1084, 1144, 1206
Fsp4HI	GCNGC	7 cut(s)	187, 1112, 1287, 1290, 1322, 1325, 1328
FspBI	CTAG	3 cut(s)	152, 156, 924
GluI	GCNGC	7 cut(s)	187, 1112, 1287, 1290, 1322, 1325, 1328
GsaI	CCCAGC	1 cut(s)	581
GsuI	CTGGAG	3 cut(s)	362, 513, 766
HaeIII	GGCC	3 cut(s)	284, 807, 1199
HapII	CCGG	1 cut(s)	1200
HgaI	GACGC	2 cut(s)	1080, 1274
Hin1II	CATG	8 cut(s)	289, 691, 710, 922, 978, 997, 1062, 1250
HindIII	AAGCTT	2 cut(s)	332, 998
HinfI	GANTC	3 cut(s)	78, 617, 731
HpaII	CCGG	1 cut(s)	1200
HphI	GGTGA	4 cut(s)	78, 91, 667, 740
Hpy188I	TCNGA	5 cut(s)	235, 611, 759, 1071, 1181
Hpy188III	TCNNGA	4 cut(s)	341, 469, 780, 1189
HpyCH4III	ACNGT	3 cut(s)	397, 771, 868
HpyCH4IV	ACGT	1 cut(s)	970
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 192, 344, 398, 413, 647, 1088, 1327
HpyF3I	CTNAG	7 cut(s)	134, 403, 651, 756, 778, 832, 1242
HpySE526I	ACGT	1 cut(s)	970
Hsp92II	CATG	8 cut(s)	289, 691, 710, 922, 978, 997, 1062, 1250
Kzo9I	GATC	3 cut(s)	447, 1181, 1185
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	9 cut(s)	349, 412, 494, 579, 683, 892, 1062, 1079, 1318
Lsp1109I	GCAGC	6 cut(s)	173, 1098, 1273, 1276, 1308, 1314
MaeI	CTAG	3 cut(s)	152, 156, 924
MaeII	ACGT	1 cut(s)	970
MalI	GATC	3 cut(s)	449, 1183, 1187
MboI	GATC	3 cut(s)	447, 1181, 1185
MboII	GAAGA	3 cut(s)	75, 643, 1237
MhlI	GDGCHC	4 cut(s)	942, 1084, 1144, 1206
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	5 cut(s)	384, 738, 951, 1157, 1299
MluNI	TGGCCA	1 cut(s)	284
MmeI	TCCRAC	2 cut(s)	66, 569
MnlI	CCTC	8 cut(s)	49, 136, 337, 369, 1022, 1061, 1065, 1243
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	213, 488
MslI	CAYNNNNRTG	2 cut(s)	910, 1121
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	1327
MspI	CCGG	1 cut(s)	1200
MspR9I	CCNGG	2 cut(s)	1166, 1201
Mva1269I	GAATGC	1 cut(s)	1065
MvaI	CCWGG	1 cut(s)	1166
MwoI	GCNNNNNNNGC	8 cut(s)	27, 192, 344, 398, 413, 647, 1088, 1327
NciI	CCSGG	1 cut(s)	1201
NcoI	CCATGG	2 cut(s)	285, 706
NdeII	GATC	3 cut(s)	447, 1181, 1185
NheI	GCTAGC	1 cut(s)	155
NlaIII	CATG	8 cut(s)	289, 691, 710, 922, 978, 997, 1062, 1250
NlaIV	GGNNCC	2 cut(s)	685, 808
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	626
PctI	GAATGC	1 cut(s)	1065
PfeI	GAWTC	3 cut(s)	78, 617, 731
PkrI	GCNGC	7 cut(s)	188, 1113, 1288, 1291, 1323, 1326, 1329
Psp124BI	GAGCTC	1 cut(s)	1084
Psp6I	CCWGG	1 cut(s)	1164
PspFI	CCCAGC	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	1164
PspN4I	GGNNCC	2 cut(s)	685, 808
PspPI	GGNCC	1 cut(s)	806
PstI	CTGCAG	2 cut(s)	1039, 1326
PvuII	CAGCTG	1 cut(s)	1327
RsaI	GTAC	2 cut(s)	207, 222
RsaNI	GTAC	2 cut(s)	206, 221
RseI	CAYNNNNRTG	2 cut(s)	910, 1121
SacI	GAGCTC	1 cut(s)	1084
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	2 cut(s)	213, 488
SatI	GCNGC	7 cut(s)	187, 1112, 1287, 1290, 1322, 1325, 1328
Sau3AI	GATC	3 cut(s)	447, 1181, 1185
Sau96I	GGNCC	1 cut(s)	806
ScaI	AGTACT	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	1166, 1201
SduI	GDGCHC	4 cut(s)	942, 1084, 1144, 1206
SfcI	CTRYAG	3 cut(s)	168, 1035, 1322
SmiMI	CAYNNNNRTG	2 cut(s)	910, 1121
Sse9I	AATT	5 cut(s)	384, 738, 951, 1157, 1299
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	3 cut(s)	152, 156, 924
SstI	GAGCTC	1 cut(s)	1084
StyD4I	CCNGG	2 cut(s)	1164, 1199
StyI	CCWWGG	4 cut(s)	285, 706, 1230, 1293
TaaI	ACNGT	3 cut(s)	397, 771, 868
TaiI	ACGT	1 cut(s)	973
TaqI	TCGA	4 cut(s)	379, 957, 1133, 1184
TasI	AATT	5 cut(s)	384, 738, 951, 1157, 1299
TatI	WGTACW	2 cut(s)	205, 220
TfiI	GAWTC	3 cut(s)	78, 617, 731
Tru1I	TTAA	2 cut(s)	213, 488
Tru9I	TTAA	2 cut(s)	213, 488
TscAI	CASTG	3 cut(s)	675, 749, 1101
TseI	GCWGC	7 cut(s)	186, 1111, 1286, 1289, 1321, 1324, 1327
TspDTI	ATGAA	6 cut(s)	332, 644, 841, 907, 1010, 1047
TspRI	CASTG	3 cut(s)	675, 749, 1101
XapI	RAATTY	2 cut(s)	384, 738
XspI	CTAG	3 cut(s)	152, 156, 924
ZrmI	AGTACT	1 cut(s)	222
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.