Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012550

Physical Location & Seq

Genomic Coordinates Reverse (-)

4787681 .. 4791519

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g08060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCAATTGGTTATGGTAATAGCTATCTGCCATTTTTGGCCATGGTGTTTGTGCAAGCGTGCTATGCAGGAATGAACATCACTTCAAAGCTTGCTCTTGAGGCTGAGATGAGCCCTCTTGTTCTTGTTGCTTATCGTCAAGTTTTCGCCACCTTAGCCATAGCTCCTTTTGCTTATTGGATGGAATGGAAAACAAGACCCCAGATCACAATGCCTATTCTTTTCCAGATTTTCCTCTGTTCCTTAACCGGAGCAACTGCCAACCAAGTTCTATATTTTGTTGGATTGAACAAAAGCTCTGCAACCGTTGCTTGTGCTTTGACAAATACACTCCCGGCTATGACATTTATCCTTGCAGTCCTTTTCAGACAAGAATCAGCAAAAATGAAGAGCAAGGCAGGGTTAGCTAAGGTGATGGGAACAGCAGTGTGTGTATGTGGAGCGATGATACTCTCATTCTACCATGGGAAAAACATTGGTATAGGTGAATCCAAAATTCACTGGAGTTATGCTCAGAAAATGGGAGAGTCGAGCTCCGGCAACAATGCCAACTCCTTTGTTGGTCCCATTTTAGTCCTCGTCAGCACCTTAGGTTGGGCAATGTGGTTCATCATCCAAGCGAAAGTGAGTGATAGTTTCCCAGCTCCTTACACAAGCACTACATTGATGTGTTTGATGGCCAGTTTGGAGTGTGGACTCATTGCTGTTAGTGTCGAGCACAATGCACAAGCATGGGCATTGACCAACCCCATGAAGCTCACCGCAGGCCTCTATTCAGGGATTATGGGTTCTGCAGTAGCATTTTTCTTCACTTCTTGGTGTATCCAAAGGAAAGGACCGCTCTATGTGTCAGTGTTCAGCCCTCTGTTGCTCATTATTGTGGCTGTTTCGAGTTGGGCTCTGCTTGATGAGAAATTATACCTCGGAACTGCTTTAGGATCAATCTTGATTGTGGCCGGGCTCTATTCTGTTCTTTGGGGAAAGACCAGGGAGACTGCGAAGCTTGAGGGCAAAGAAACAGATGCAGATACAAAGCTAGATGCTGTTTTCAAGGAATTTGAGAAAAACGACTTGGAGCTGCAGCTGCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0006810 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

365

Amino Acids

39.59

Weight (kDa)

8.66

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	3 - 93	1.9e-09	EamA-like transporter family
EamA	PF00892	130 - 267	9.8e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012550)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09380
fragaria_vesca	FvH4_5g33020 FvH4_6g08060 FvH4_6g08060
malus_domestica	MD04G1189900.v1.1 MD04G1190500.v1.1 MD12G1202700.v1.1
prunus_persica	Prupe.6G308500_v2.0.a1
pyrus_communis	pycom04g16830 pycom12g18920
rosa_chinensis	RchiOBHm_Chr3g0457731
rosa_laevigata	RLG00000025190
rosa_roxburghii	Rroxscaffold_6G00421530
rosa_rugosa	Rorug03G0023000 Rorug03G0023100
rosa_samantha	Rh3AG083700 Rh3CG086400 Rh3DG087100
rosa_wichuraiana	Rw3G007170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	841
AciI	CCGC	2 cut(s)	762, 839
AclWI	GGATC	1 cut(s)	946
AcoI	YGGCCR	3 cut(s)	39, 678, 954
AcsI	RAATTY	2 cut(s)	495, 1055
AfiI	CCNNNNNNNGG	1 cut(s)	594
AgsI	TTSAA	3 cut(s)	87, 289, 1051
AjnI	CCWGG	1 cut(s)	986
AjuI	GAANNNNNNNTTGG	2 cut(s)	1055, 1087
AloI	GAACNNNNNNTCC	2 cut(s)	772, 804
Alw21I	GWGCWC	2 cut(s)	536, 720
Alw26I	GTCTC	1 cut(s)	986
AlwI	GGATC	1 cut(s)	946
AoxI	GGCC	4 cut(s)	39, 678, 766, 954
ApeKI	GCWGC	3 cut(s)	1078, 1081, 1084
ApoI	RAATTY	2 cut(s)	495, 1055
AspS9I	GGNCC	2 cut(s)	563, 836
AsuC2I	CCSGG	2 cut(s)	335, 958
AsuHPI	GGTGA	3 cut(s)	424, 497, 751
AvaII	GGWCC	2 cut(s)	563, 836
AxyI	CCTNAGG	1 cut(s)	589
BalI	TGGCCA	2 cut(s)	41, 680
BanII	GRGCYC	4 cut(s)	116, 536, 901, 963
Bbv12I	GWGCWC	2 cut(s)	536, 720
BbvI	GCAGC	2 cut(s)	1065, 1071
BccI	CCATC	3 cut(s)	175, 409, 670
BcgI	CGANNNNNNTGC	2 cut(s)	704, 738
BciT130I	CCWGG	1 cut(s)	988
BciVI	GTATCC	1 cut(s)	833
BcnI	CCSGG	2 cut(s)	335, 958
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	1 cut(s)	1037
BfmI	CTRYAG	2 cut(s)	792, 1079
BfuI	GTATCC	1 cut(s)	833
BisI	GCNGC	3 cut(s)	1079, 1082, 1085
BlsI	GCNGC	3 cut(s)	1080, 1083, 1086
Bme1390I	CCNGG	3 cut(s)	335, 958, 988
Bme18I	GGWCC	2 cut(s)	563, 836
BmgT120I	GGNCC	2 cut(s)	563, 836
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	3 cut(s)	335, 958, 988
BmsI	GCATC	2 cut(s)	1012, 1030
BplI	GAGNNNNNCTC	6 cut(s)	496, 528, 518, 550, 883, 915
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	2 cut(s)	154, 408
BpuEI	CTTGAG	2 cut(s)	119, 1025
BpuMI	CCSGG	2 cut(s)	335, 958
BsaJI	CCNNGG	4 cut(s)	42, 463, 922, 987
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse1I	ACTGG	2 cut(s)	506, 681
Bse21I	CCTNAGG	1 cut(s)	589
Bse3DI	GCAATG	2 cut(s)	606, 699
BseBI	CCWGG	1 cut(s)	988
BseDI	CCNNGG	4 cut(s)	42, 463, 922, 987
BseGI	GGATG	2 cut(s)	186, 612
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseMI	GCAATG	2 cut(s)	606, 699
BseMII	CTCAG	2 cut(s)	96, 527
BseNI	ACTGG	2 cut(s)	506, 681
BseXI	GCAGC	2 cut(s)	1065, 1071
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	1 cut(s)	1070
BshFI	GGCC	4 cut(s)	41, 680, 768, 956
BsiHKAI	GWGCWC	2 cut(s)	536, 720
BsiSI	CCGG	4 cut(s)	249, 335, 537, 957
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	41, 680, 768, 956
Bsp1286I	GDGCHC	5 cut(s)	116, 536, 720, 901, 963
Bsp143I	GATC	2 cut(s)	204, 938
Bsp19I	CCATGG	2 cut(s)	42, 463
BspACI	CCGC	2 cut(s)	762, 839
BspANI	GGCC	4 cut(s)	41, 680, 768, 956
BspCNI	CTCAG	2 cut(s)	97, 526
BspLI	GGNNCC	1 cut(s)	565
BspMAI	CTGCAG	2 cut(s)	796, 1083
BspPI	GGATC	1 cut(s)	946
BspQI	GCTCTTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	841
BsrDI	GCAATG	2 cut(s)	606, 699
BsrI	ACTGG	2 cut(s)	506, 681
BssECI	CCNNGG	4 cut(s)	42, 463, 922, 987
BssMI	GATC	2 cut(s)	204, 938
BssT1I	CCWWGG	2 cut(s)	42, 463
Bst2UI	CCWGG	1 cut(s)	988
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	57, 61, 93, 766
BstDEI	CTNAG	5 cut(s)	105, 154, 408, 513, 589
BstDSI	CCRYGG	2 cut(s)	42, 463
BstF5I	GGATG	2 cut(s)	186, 612
BstKTI	GATC	2 cut(s)	207, 941
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	2 cut(s)	204, 938
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 101, 155, 170, 308, 404, 1084
BstNI	CCWGG	1 cut(s)	988
BstSCI	CCNGG	3 cut(s)	333, 956, 986
BstSFI	CTRYAG	2 cut(s)	792, 1079
BstV1I	GCAGC	2 cut(s)	1065, 1071
Bsu36I	CCTNAGG	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	833
BsuRI	GGCC	4 cut(s)	41, 680, 768, 956
BtgI	CCRYGG	2 cut(s)	42, 463
BtgZI	GCGATG	1 cut(s)	458
BtsCI	GGATG	2 cut(s)	186, 612
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	432, 499, 858
Cac8I	GCNNGC	4 cut(s)	57, 61, 93, 766
Cfr13I	GGNCC	2 cut(s)	563, 836
CviAII	CATG	4 cut(s)	43, 464, 732, 751
DdeI	CTNAG	5 cut(s)	105, 154, 408, 513, 589
DpnI	GATC	2 cut(s)	206, 940
DpnII	GATC	2 cut(s)	204, 938
EaeI	YGGCCR	3 cut(s)	39, 678, 954
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	42, 463
Eco147I	AGGCCT	1 cut(s)	768
Eco24I	GRGCYC	4 cut(s)	116, 536, 901, 963
Eco47I	GGWCC	2 cut(s)	563, 836
Eco53kI	GAGCTC	1 cut(s)	534
Eco81I	CCTNAGG	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	986
EcoT14I	CCWWGG	2 cut(s)	42, 463
EcoT38I	GRGCYC	4 cut(s)	116, 536, 901, 963
ErhI	CCWWGG	2 cut(s)	42, 463
FaeI	CATG	4 cut(s)	46, 467, 735, 754
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	42, 463, 731, 750
Fnu4HI	GCNGC	3 cut(s)	1079, 1082, 1085
FokI	GGATG	2 cut(s)	193, 599
FriOI	GRGCYC	4 cut(s)	116, 536, 901, 963
Fsp4HI	GCNGC	3 cut(s)	1079, 1082, 1085
FspBI	CTAG	1 cut(s)	1037
GluI	GCNGC	3 cut(s)	1079, 1082, 1085
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	523
HaeIII	GGCC	4 cut(s)	41, 680, 768, 956
HapII	CCGG	4 cut(s)	249, 335, 537, 957
Hin1II	CATG	4 cut(s)	46, 467, 735, 754
HindIII	AAGCTT	2 cut(s)	89, 1001
HinfI	GANTC	4 cut(s)	374, 488, 527, 696
HpaII	CCGG	4 cut(s)	249, 335, 537, 957
HphI	GGTGA	3 cut(s)	424, 497, 751
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	3 cut(s)	368, 516, 926
Hpy188III	TCNNGA	3 cut(s)	98, 226, 946
Hpy8I	GTNNAC	1 cut(s)	695
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	9 cut(s)	55, 68, 302, 356, 725, 794, 1025, 1081, 1087
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 101, 155, 170, 308, 404, 1084
HpyF3I	CTNAG	5 cut(s)	105, 154, 408, 513, 589
Hsp92II	CATG	4 cut(s)	46, 467, 735, 754
Kzo9I	GATC	2 cut(s)	204, 938
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	6 cut(s)	169, 251, 440, 539, 649, 1075
Lsp1109I	GCAGC	2 cut(s)	1065, 1071
LweI	GCATC	2 cut(s)	1012, 1030
MaeI	CTAG	1 cut(s)	1037
MalI	GATC	2 cut(s)	206, 940
MbiI	CCGCTC	1 cut(s)	841
MboI	GATC	2 cut(s)	204, 938
MboII	GAAGA	2 cut(s)	400, 799
MfeI	CAATTG	1 cut(s)	6
MhlI	GDGCHC	5 cut(s)	116, 536, 720, 901, 963
MlsI	TGGCCA	2 cut(s)	41, 680
MluCI	AATT	4 cut(s)	6, 495, 914, 1055
MluNI	TGGCCA	2 cut(s)	41, 680
MlyI	GAGTC	2 cut(s)	536, 690
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	8 cut(s)	94, 126, 245, 587, 779, 873, 932, 1000
Mox20I	TGGCCA	2 cut(s)	41, 680
MscI	TGGCCA	2 cut(s)	41, 680
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	3 cut(s)	667, 730, 878
Msp20I	TGGCCA	2 cut(s)	41, 680
MspA1I	CMGCKG	1 cut(s)	1084
MspI	CCGG	4 cut(s)	249, 335, 537, 957
MspR9I	CCNGG	3 cut(s)	335, 958, 988
MunI	CAATTG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	988
MwoI	GCNNNNNNNGC	7 cut(s)	65, 101, 155, 170, 308, 404, 1084
NciI	CCSGG	2 cut(s)	335, 958
NcoI	CCATGG	2 cut(s)	42, 463
NdeII	GATC	2 cut(s)	204, 938
NlaIII	CATG	4 cut(s)	46, 467, 735, 754
NlaIV	GGNNCC	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	374, 488
PkrI	GCNGC	3 cut(s)	1080, 1083, 1086
PleI	GAGTC	2 cut(s)	535, 690
PpsI	GAGTC	2 cut(s)	535, 690
Psp124BI	GAGCTC	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	986
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	986
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	563, 836
PstI	CTGCAG	2 cut(s)	796, 1083
PvuII	CAGCTG	1 cut(s)	1084
RseI	CAYNNNNRTG	3 cut(s)	667, 730, 878
SacI	GAGCTC	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	3 cut(s)	1079, 1082, 1085
Sau3AI	GATC	2 cut(s)	204, 938
Sau96I	GGNCC	2 cut(s)	563, 836
SchI	GAGTC	2 cut(s)	536, 690
ScrFI	CCNGG	3 cut(s)	335, 958, 988
SduI	GDGCHC	5 cut(s)	116, 536, 720, 901, 963
SfaNI	GCATC	2 cut(s)	1012, 1030
SfcI	CTRYAG	2 cut(s)	792, 1079
SinI	GGWCC	2 cut(s)	563, 836
SmiMI	CAYNNNNRTG	3 cut(s)	667, 730, 878
SmlI	CTYRAG	2 cut(s)	98, 1004
SmoI	CTYRAG	2 cut(s)	98, 1004
Sse9I	AATT	4 cut(s)	6, 495, 914, 1055
SseBI	AGGCCT	1 cut(s)	768
SsiI	CCGC	2 cut(s)	762, 839
SspMI	CTAG	1 cut(s)	1037
SstI	GAGCTC	1 cut(s)	536
StuI	AGGCCT	1 cut(s)	768
StyD4I	CCNGG	3 cut(s)	333, 956, 986
StyI	CCWWGG	2 cut(s)	42, 463
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	3 cut(s)	530, 714, 890
TasI	AATT	4 cut(s)	6, 495, 914, 1055
TfiI	GAWTC	2 cut(s)	374, 488
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	3 cut(s)	432, 506, 858
TseI	GCWGC	3 cut(s)	1078, 1081, 1084
TspDTI	ATGAA	4 cut(s)	89, 401, 598, 767
TspRI	CASTG	3 cut(s)	432, 506, 858
VpaK11BI	GGWCC	2 cut(s)	563, 836
XapI	RAATTY	2 cut(s)	495, 1055
XspI	CTAG	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.