AT1G09530

Transcription factor

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
3075768 .. 3079654
3887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09530.6

Sequence Viewer

Length: 1575 bp
ATGCCTCTGTTTGAGCTTTTCAGGCTCACCAAAGCTAAGCTTGAATCTGCTCAAGACAGGAACCCTTCTCCACCTGTAGATGAAGTTGTGGAGCTGGTGTGGGAAAATGGTCAGATATCAACTCAAAGTCAGTCAAGTAGATCGAGGAACATTCCTCCACCACAAGCAAACTCTTCTAGAGCTAGAGAGATTGGAAATGGCTCAAAGACGACTATGGTGGACGAGATCCCTATGTCAGTGCCATCACTAATGACGGGTTTGAGTCAAGACGATGACTTTGTTCCATGGTTGAATCATCATCCCTCCCTTGATGGATATTGCTCTGATTTCTTGCGTGATGTGTCGTCTCCTGTTACTGTCAACGAGCAAGAGAGTGATATGGCGGTAAACCAAACTGCTTTCCCGTTGTTTCAGAGAAGAAAGGATGGCAATGAATCAGCTCCTGCTGCTTCTTCGTCGCAGTATAACGGTTTCCAATCGCATTCTCTGTATGGAAGTGATAGAGCTAGAGATCTTCCTAGCCAACAAACCAATCCGGATCGGTTTACTCAGACGCAGGAACCACTAATTACTAGTAACAAGCCTAGTTTGGTCAACTTTTCACATTTCTTACGCCCTGCAACTTTTGCGAAGACTACTAATAATAACCTTCATGACACTAAAGAAAAGAGTCCTCAAAGCCCGCCAAATGTGTTTCAGACCAGAGTTCTTGGAGCTAAAGACTCTGAAGATAAGGTTCTTAACGAGTCTGTTGCTTCTGCTACGCCTAAAGATAACCAAAAGGCTTGCCTAATATCAGAGGACTCATGTAGAAAAGACCAAGAGAGTGAAAAAGCAGTTGTATGTTCTTCTGTTGGCTCGGGTAATAGTCTCGATGGCCCATCCGAAAGTCCTTCACTTTCTTTAAAGAGAAAGCATTCGAATATTCAAGACATTGACTGTCATAGTGAAGATGTGGAAGAAGAATCAGGAGATGGAAGAAAGGAAGCAGGTCCATCTCGAACGGGTTTGGGTTCAAAGAGAAGCCGCTCTGCAGAAGTGCATAATCTGTCTGAAAGGAGACGGCGTGATAGGATCAACGAGAAGATGCGTGCCCTGCAAGAACTCATTCCAAACTGTAACAAGGTGGACAAAGCTTCGATGCTAGATGAAGCCATCGAGTATCTCAAGTCACTCCAACTTCAAGTGCAGATCATGTCAATGGCGTCTGGTTACTATCTGCCACCGGCGGTTATGTTCCCACCGGGTATGGGGCATTACCCGGCAGCAGCTGCTGCAATGGCAATGGGTATGGGAATGCCTTATGCAATGGGCTTGCCTGATTTGAGCCGTGGTGGTTCATCGGTTAACCACGGACCACAGTTCCAAGTCTCGGGGATGCAACAACAACCAGTGGCGATGGGTATTCCACGTGTCTCTGGTGGTGGTATCTTTGCCGGTTCTTCGACGATTGGCAATGGCTCGACTAGAGATTTATCTGGTTCTAAAGATCAAACAACGACGAATAACAACAGTAACTTGAAACCAATAAAGAGAAAACAGGGGTCTTCTGATCAGTTTTGTGGATCGTCGTGA

Protein Analysis

524

Amino Acids

56.99

Weight (kDa)

6.11

Isoelectric Point (pI)

64.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 346 - 393 4.2e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 352 - 395 6.7e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 980
AccBSI CCGCTC 1 cut(s) 1029
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 383, 683, 1027, 1229
AclWI GGATC 4 cut(s) 220, 546, 1082, 1573
AcuI CTGAAG 1 cut(s) 747
AcvI CACGTG 1 cut(s) 1412
AcyI GRCGYC 1 cut(s) 1205
AfiI CCNNNNNNNGG 2 cut(s) 1250, 1372
AflIII ACRYGT 1 cut(s) 1411
AgsI TTSAA 6 cut(s) 44, 292, 929, 1017, 1184, 1522
AhlI ACTAGT 1 cut(s) 572
Alw26I GTCTC 5 cut(s) 351, 875, 1054, 1375, 1420
AlwI GGATC 4 cut(s) 220, 546, 1082, 1573
AlwNI CAGNNNCTG 3 cut(s) 443, 1271, 1274
Ama87I CYCGRG 2 cut(s) 859, 1372
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 1 cut(s) 877
ApeKI GCWGC 5 cut(s) 446, 1265, 1268, 1271, 1274
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
Asp700I GAANNNNTTC 2 cut(s) 916, 1107
AspS9I GGNCC 3 cut(s) 878, 992, 1355
AsuC2I CCSGG 2 cut(s) 1245, 1262
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 920
AvaI CYCGRG 2 cut(s) 859, 1372
AvaII GGWCC 2 cut(s) 992, 1355
BaeGI GKGCMC 1 cut(s) 1096
BbrPI CACGTG 1 cut(s) 1412
BbsI GAAGAC 2 cut(s) 638, 1539
BbvI GCAGC 5 cut(s) 433, 1258, 1261, 1277, 1280
BccI CCATC 9 cut(s) 250, 305, 419, 869, 889, 968, 1003, 1163, 1393
BceAI ACGGC 2 cut(s) 1079, 1314
BcgI CGANNNNNNTGC 2 cut(s) 734, 768
BclI TGATCA 1 cut(s) 1552
BcnI CCSGG 2 cut(s) 1245, 1262
BcoDI GTCTC 5 cut(s) 351, 875, 1054, 1375, 1420
BcuI ACTAGT 1 cut(s) 572
BfaI CTAG 8 cut(s) 177, 183, 507, 519, 573, 585, 1145, 1467
BfmI CTRYAG 2 cut(s) 75, 1032
BfuAI ACCTGC 1 cut(s) 980
BglII AGATCT 1 cut(s) 511
BisI GCNGC 6 cut(s) 447, 1027, 1266, 1269, 1272, 1275
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 6 cut(s) 448, 1028, 1267, 1270, 1273, 1276
Bme1390I CCNGG 2 cut(s) 1245, 1262
Bme18I GGWCC 2 cut(s) 992, 1355
BmeT110I CYCGRG 2 cut(s) 859, 1372
BmgT120I GGNCC 3 cut(s) 878, 992, 1355
BmiI GGNNCC 2 cut(s) 62, 561
BmrFI CCNGG 2 cut(s) 1245, 1262
BmsI GCATC 3 cut(s) 1077, 1131, 1368
BpiI GAAGAC 2 cut(s) 638, 1539
Bpu1102I GCTNAGC 1 cut(s) 36
Bpu14I TTCGAA 1 cut(s) 920
BpuEI CTTGAG 2 cut(s) 36, 1151
BpuMI CCSGG 2 cut(s) 1245, 1262
BsaAI YACGTR 1 cut(s) 1412
BsaHI GRCGYC 1 cut(s) 1205
BsaJI CCNNGG 3 cut(s) 284, 1330, 1351
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 1051, 1081
Bsc4I CCNNNNNNNGG 2 cut(s) 1250, 1372
Bse118I RCCGGY 2 cut(s) 1225, 1436
Bse1I ACTGG 1 cut(s) 1391
Bse3DI GCAATG 5 cut(s) 436, 1284, 1290, 1314, 1462
BseAI TCCGGA 1 cut(s) 535
BseDI CCNNGG 3 cut(s) 284, 1330, 1351
BseGI GGATG 4 cut(s) 298, 430, 881, 1383
BseLI CCNNNNNNNGG 2 cut(s) 1250, 1372
BseMI GCAATG 5 cut(s) 436, 1284, 1290, 1314, 1462
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 1391
BseSI GKGCMC 1 cut(s) 1096
BseXI GCAGC 5 cut(s) 433, 1258, 1261, 1277, 1280
BsgI GTGCAG 1 cut(s) 1208
BshFI GGCC 1 cut(s) 879
BsiHKCI CYCGRG 2 cut(s) 859, 1372
BsiSI CCGG 5 cut(s) 536, 1226, 1244, 1262, 1437
BslI CCNNNNNNNGG 2 cut(s) 1250, 1372
BsmAI GTCTC 5 cut(s) 351, 875, 1054, 1375, 1420
BsmBI CGTCTC 2 cut(s) 351, 1054
BsmI GAATGC 3 cut(s) 481, 916, 1302
BsnI GGCC 1 cut(s) 879
BsoBI CYCGRG 2 cut(s) 859, 1372
Bsp119I TTCGAA 1 cut(s) 920
Bsp1286I GDGCHC 1 cut(s) 1096
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
Bsp1720I GCTNAGC 1 cut(s) 36
Bsp19I CCATGG 1 cut(s) 284
BspACI CCGC 4 cut(s) 383, 683, 1027, 1229
BspANI GGCC 1 cut(s) 879
BspCNI CTCAG 1 cut(s) 562
BspEI TCCGGA 1 cut(s) 535
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 2 cut(s) 62, 561
BspMAI CTGCAG 1 cut(s) 1036
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 4 cut(s) 220, 546, 1082, 1573
BspT104I TTCGAA 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 1029
BsrDI GCAATG 5 cut(s) 436, 1284, 1290, 1314, 1462
BsrFI RCCGGY 2 cut(s) 1225, 1436
BsrI ACTGG 1 cut(s) 1391
BssAI RCCGGY 2 cut(s) 1225, 1436
BssECI CCNNGG 3 cut(s) 284, 1330, 1351
BssMI GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
BssNI GRCGYC 1 cut(s) 1205
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 6 cut(s) 358, 470, 941, 1118, 1362, 1514
Bst6I CTCTTC 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 1205
BstAPI GCANNNNNTGC 3 cut(s) 626, 1271, 1274
BstBAI YACGTR 1 cut(s) 1412
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 4 cut(s) 683, 787, 1092, 1316
BstDEI CTNAG 2 cut(s) 36, 549
BstDSI CCRYGG 3 cut(s) 284, 1330, 1351
BstF5I GGATG 4 cut(s) 298, 430, 881, 1383
BstKTI GATC 9 cut(s) 143, 228, 514, 541, 1077, 1194, 1492, 1555, 1568
BstMAI GTCTC 5 cut(s) 351, 875, 1054, 1375, 1420
BstMBI GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
BstMWI GCNNNNNNNGC 7 cut(s) 22, 446, 626, 1096, 1271, 1274, 1280
BstSCI CCNGG 2 cut(s) 1243, 1260
BstSFI CTRYAG 2 cut(s) 75, 1032
BstSLI GKGCMC 1 cut(s) 1096
BstV1I GCAGC 5 cut(s) 433, 1258, 1261, 1277, 1280
BstV2I GAAGAC 2 cut(s) 638, 1539
BstX2I RGATCY 2 cut(s) 225, 511
BstYI RGATCY 2 cut(s) 225, 511
BsuRI GGCC 1 cut(s) 879
BtgI CCRYGG 3 cut(s) 284, 1330, 1351
BtgZI GCGATG 1 cut(s) 1412
BtsCI GGATG 4 cut(s) 298, 430, 881, 1383
BtsIMutI CAGTG 2 cut(s) 243, 1398
BveI ACCTGC 1 cut(s) 980
Cac8I GCNNGC 4 cut(s) 683, 787, 1092, 1316
CaiI CAGNNNCTG 3 cut(s) 443, 1271, 1274
CciI TCATGA 1 cut(s) 652
Cfr10I RCCGGY 2 cut(s) 1225, 1436
Cfr13I GGNCC 3 cut(s) 878, 992, 1355
CseI GACGC 2 cut(s) 562, 1194
CviAII CATG 4 cut(s) 285, 653, 807, 1195
DdeI CTNAG 2 cut(s) 36, 549
DpnI GATC 9 cut(s) 142, 227, 513, 540, 1076, 1193, 1491, 1554, 1567
DpnII GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
DraI TTTAAA 1 cut(s) 906
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 284
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 992, 1355
Eco57I CTGAAG 1 cut(s) 747
Eco72I CACGTG 1 cut(s) 1412
Eco88I CYCGRG 2 cut(s) 859, 1372
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 284
Esp3I CGTCTC 2 cut(s) 351, 1054
FaeI CATG 4 cut(s) 288, 656, 810, 1198
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 4 cut(s) 284, 652, 806, 1194
FauI CCCGC 1 cut(s) 690
FbaI TGATCA 1 cut(s) 1552
Fnu4HI GCNGC 6 cut(s) 447, 1027, 1266, 1269, 1272, 1275
FokI GGATG 4 cut(s) 285, 437, 868, 1390
Fsp4HI GCNGC 6 cut(s) 447, 1027, 1266, 1269, 1272, 1275
FspBI CTAG 8 cut(s) 177, 183, 507, 519, 573, 585, 1145, 1467
GluI GCNGC 6 cut(s) 447, 1027, 1266, 1269, 1272, 1275
HaeIII GGCC 1 cut(s) 879
HapII CCGG 5 cut(s) 536, 1226, 1244, 1262, 1437
HgaI GACGC 2 cut(s) 562, 1194
Hin1I GRCGYC 1 cut(s) 1205
Hin1II CATG 4 cut(s) 288, 656, 810, 1198
HincII GTYRAC 3 cut(s) 361, 595, 1348
HindII GTYRAC 3 cut(s) 361, 595, 1348
HindIII AAGCTT 2 cut(s) 38, 1134
HinfI GANTC 9 cut(s) 44, 262, 292, 434, 670, 722, 746, 803, 965
HpaI GTTAAC 1 cut(s) 1348
HpaII CCGG 5 cut(s) 536, 1226, 1244, 1262, 1437
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 7 cut(s) 220, 361, 388, 546, 595, 1129, 1348
Hpy8I GTNNAC 7 cut(s) 220, 361, 388, 546, 595, 1129, 1348
Hpy99I CGWCG 4 cut(s) 460, 1450, 1504, 1573
HpyAV CCTTC 3 cut(s) 75, 659, 903
HpyCH4III ACNGT 6 cut(s) 358, 470, 941, 1118, 1362, 1514
HpyCH4IV ACGT 1 cut(s) 1411
HpyCH4V TGCA 8 cut(s) 620, 1034, 1042, 1099, 1189, 1277, 1307, 1381
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 446, 626, 1096, 1271, 1274, 1280
HpyF3I CTNAG 2 cut(s) 36, 549
HpySE526I ACGT 1 cut(s) 1411
Hsp92I GRCGYC 1 cut(s) 1205
Hsp92II CATG 4 cut(s) 288, 656, 810, 1198
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 1552
KspAI GTTAAC 1 cut(s) 1348
Kzo9I GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
LmnI GCTCC 3 cut(s) 91, 445, 713
Lsp1109I GCAGC 5 cut(s) 433, 1258, 1261, 1277, 1280
LweI GCATC 3 cut(s) 1077, 1131, 1368
MaeI CTAG 8 cut(s) 177, 183, 507, 519, 573, 585, 1145, 1467
MaeII ACGT 1 cut(s) 1411
MaeIII GTNAC 6 cut(s) 352, 575, 1118, 1170, 1211, 1514
MalI GATC 9 cut(s) 142, 227, 513, 540, 1076, 1193, 1491, 1554, 1567
MbiI CCGCTC 1 cut(s) 1029
MboI GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
MflI RGATCY 2 cut(s) 225, 511
MhlI GDGCHC 1 cut(s) 1096
MluCI AATT 1 cut(s) 567
MlyI GAGTC 5 cut(s) 271, 679, 716, 755, 797
MmeI TCCRAC 1 cut(s) 1201
MnlI CCTC 6 cut(s) 15, 138, 165, 313, 684, 793
MroI TCCGGA 1 cut(s) 535
MroXI GAANNNNTTC 2 cut(s) 916, 1107
MseI TTAA 3 cut(s) 741, 905, 1347
MslI CAYNNNNRTG 1 cut(s) 1199
MspA1I CMGCKG 1 cut(s) 1271
MspI CCGG 5 cut(s) 536, 1226, 1244, 1262, 1437
MspR9I CCNGG 2 cut(s) 1245, 1262
Mva1269I GAATGC 3 cut(s) 481, 916, 1302
MwoI GCNNNNNNNGC 7 cut(s) 22, 446, 626, 1096, 1271, 1274, 1280
NciI CCSGG 2 cut(s) 1245, 1262
NcoI CCATGG 1 cut(s) 284
NdeII GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
NlaIII CATG 4 cut(s) 288, 656, 810, 1198
NlaIV GGNNCC 2 cut(s) 62, 561
NmuCI GTSAC 1 cut(s) 1170
NspV TTCGAA 1 cut(s) 920
PagI TCATGA 1 cut(s) 652
PctI GAATGC 3 cut(s) 481, 916, 1302
PdmI GAANNNNTTC 2 cut(s) 916, 1107
PfeI GAWTC 4 cut(s) 44, 292, 434, 965
PkrI GCNGC 6 cut(s) 448, 1028, 1267, 1270, 1273, 1276
PleI GAGTC 5 cut(s) 270, 678, 716, 754, 797
PmaCI CACGTG 1 cut(s) 1412
PmlI CACGTG 1 cut(s) 1412
PpsI GAGTC 5 cut(s) 270, 678, 716, 754, 797
Ppu21I YACGTR 1 cut(s) 1412
PspCI CACGTG 1 cut(s) 1412
PspN4I GGNNCC 2 cut(s) 62, 561
PspPI GGNCC 3 cut(s) 878, 992, 1355
PstI CTGCAG 1 cut(s) 1036
PstNI CAGNNNCTG 3 cut(s) 443, 1271, 1274
PsuI RGATCY 2 cut(s) 225, 511
PvuII CAGCTG 1 cut(s) 1271
RseI CAYNNNNRTG 1 cut(s) 1199
SaqAI TTAA 3 cut(s) 741, 905, 1347
SatI GCNGC 6 cut(s) 447, 1027, 1266, 1269, 1272, 1275
Sau3AI GATC 9 cut(s) 140, 225, 511, 538, 1074, 1191, 1489, 1552, 1565
Sau96I GGNCC 3 cut(s) 878, 992, 1355
SchI GAGTC 5 cut(s) 271, 679, 716, 755, 797
ScrFI CCNGG 2 cut(s) 1245, 1262
SduI GDGCHC 1 cut(s) 1096
SfaNI GCATC 3 cut(s) 1077, 1131, 1368
SfcI CTRYAG 2 cut(s) 75, 1032
SfuI TTCGAA 1 cut(s) 920
SgrAI CRCCGGYG 1 cut(s) 1225
SinI GGWCC 2 cut(s) 992, 1355
SmiMI CAYNNNNRTG 1 cut(s) 1199
SmlI CTYRAG 2 cut(s) 51, 1166
SmoI CTYRAG 2 cut(s) 51, 1166
SpeI ACTAGT 1 cut(s) 572
Sse9I AATT 1 cut(s) 567
SsiI CCGC 4 cut(s) 383, 683, 1027, 1229
SspI AATATT 1 cut(s) 925
SspMI CTAG 8 cut(s) 177, 183, 507, 519, 573, 585, 1145, 1467
StyD4I CCNGG 2 cut(s) 1243, 1260
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 6 cut(s) 358, 470, 941, 1118, 1362, 1514
TaiI ACGT 1 cut(s) 1414
TaqI TCGA 8 cut(s) 143, 873, 920, 1000, 1139, 1158, 1445, 1463
TasI AATT 1 cut(s) 567
TauI GCSGC 1 cut(s) 1029
TfiI GAWTC 4 cut(s) 44, 292, 434, 965
Tru1I TTAA 3 cut(s) 741, 905, 1347
Tru9I TTAA 3 cut(s) 741, 905, 1347
TscAI CASTG 2 cut(s) 243, 1398
TseFI GTSAC 1 cut(s) 1170
TseI GCWGC 5 cut(s) 446, 1265, 1268, 1271, 1274
Tsp45I GTSAC 1 cut(s) 1170
TspDTI ATGAA 5 cut(s) 96, 447, 641, 1164, 1329
TspGWI ACGGA 1 cut(s) 1368
TspRI CASTG 2 cut(s) 243, 1398
VpaK11BI GGWCC 2 cut(s) 992, 1355
XbaI TCTAGA 1 cut(s) 176
XmnI GAANNNNTTC 2 cut(s) 916, 1107
XspI CTAG 8 cut(s) 177, 183, 507, 519, 573, 585, 1145, 1467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.