Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Forward (+)

2442811 .. 2449848

Gene Structure 7038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGCTGTCCAGATTTGAACTCACAGAATTCCTGATTTCCACTTCAGCACCATTTGGGGAGGAAAGAGGAAGAGGAAGAAGAACAAGGATGGCTGAGGATACACTCCAAGTTCCAAGAGTGCAACTGGGAAGTGAGGGATTCGAGGTCTCCAAGCTTGGATTTGGGTGTACTGGGTTTACTGGAATCAACAATAGTGCTCCAGTCAGTGAAGAGCTTGCATTATCAATCATCAAGCATGCATTTGATAAAGGAATAACATTCTTTGATACATCAGATATTTGTGGACCACATACTAATGAAGTTTTGGTGGGAAAGGCATTAAAGCAGTTGCCTCGAGATGAAGTTCAGTTGGCCACAAAGTTTGGTATGGTAAGAATTGAGCCTAATCAAGTTATAGTTAATGGCACTCCGGAATATGCCCGCTCCTGTTGTGAAGCTAGTCTGAACCGCCTCGGTGTTGACTACATCGATCTTTACTATCAGCACCGGATAGACACATCAGTCCCAATAGAGGACACTATGGAAGAGCTAAAGAAGCTGGTGAATGAGGGGAAGATAAAGTATATTGGATTATCTGAAGCTAGTGCAGAAACAATAAGGAGGGCACATGCAGTTCATCCTATTACTGCTGTACAAATGGAGTGGAATCTTTGGACTCGTGAAATTGAGGAAGAAATTGTCCCTCTTTGCAGGGAACTTGAAATTGGGATAGTGACATACAGCCCTCTTGGTCGTGGATTTTTTGCTGTCAAGGCAATGGTGGAAAGTTTGCCTGCAAGTAGTTTTCTGCAATCACTTCCTCGTTGTCAAGGCGACAACCTTGAGAAAAACAAGATTCTTTATGGTAAAGTACAATACTTGGCTGAGAAACATGGATGCACCCCTGCACAACTCGCGCTTGCGTGGATTGTTCATCAAGGTGATCATGTGGTGCCTATCCCTGGGACAACTAAGACTGAAAATATTGATGCTAATGTCGGTTCCTTGAGAGTGAAACTCACTGAAGAAGATATACAGGAGATATCTGATATGATCCCCATCAATGCAGCGACAGGGAATAGAGTAATTAAGTTTAACCGAGCTAATTTAACAAACGAGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGGAGAAGAAGAGTCCAAAATCCGAAAGGATGGATGAAGCTGGCCAAATCCAAGTTCCAAGGGTTAAATTGGGCAATCAGGGACTTGAGGTCTCAAAATTGGGGTTTGGATGCATGGGCCTGTCTGGAGTCTACAACTCTCCTCTTGCTGATGAGGATGGAATCTCAATAATAAAAGAGGCTTTCAATAAAGGAATCACTTTCTTTGACACAGCTGATGTATATGGACCTCATTTGAATGAAATTCTTGTCGGAAAGGCGCTGAAGCAGTTGCCAAGAGAAAAAATTCAATTAGCCACGAAGTTTGGTATTGTTGGAAGAGTGGATCCTCCTGGTATTACAGCCAAGGGTACTCCGGAGTATGTCCGCTCATGCTGTGAGGCTAGCTTGAAGCGTCTTGATGTGGACTACATTGATCTGTATTATCAACATCGGGTGGACACTTCGGTGCCTATAGAGGAAACTATGGGTGAGCTGAAGAAACTGGTGGAAGAAGGAAAAATAAAATATATCGGGTTATCTGAAGCCAGTCCGGACACCATAAGGAGGGCTCATGCAGTTCATCCCATCACGGCTCTACAAATGGAGTGGTCCCTCTGGACTCGTGATATTGAGGAAGCAATTGTTCCACTTTGCAGGGAGCTTGGCATTGGAATAGTTCCATATAGTCCTCTTGGTCGTGGGTTTTTCGGTGGGAAAGCAGTTGTGGAAAGTGTGCCTTCAAATAGTTTCGTGTCGACACATCCTCGGTTCATAGGAGAAAACTTGGAGAAGAACAAGAACATTTACAATCGCATGGAAAGCCTTGCTAAGATACACCAATGCTTTCCTGCTCAACTAGCACTAGCATGGGTTCTCCACCAAGGAGATGATGTTGTACCTATCCCCGGGACAACAAAGATTAAGAACCTGGATGCAAACATTGGCTCCTTGAAGGTGAAACTTGGGAAAGAGGACTTGAAAGAAGTTTCTGGTGCTGTACCACTCGACCAAGTCGCTGGTGACAGAACTTATGGAAGCCTGATGCCTTTGCAATGGAAATTCGCCAACACTCCGCCGAAAGAATCCAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

745

Amino Acids

82.37

Weight (kDa)

6.02

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	51 - 343	7.5e-71	Aldo/keto reductase family
Aldo_ket_red	PF00248	420 - 711	7.3e-75	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AccB1I	GGYRCC	2 cut(s)	931, 1609
AccBSI	CCGCTC	2 cut(s)	423, 1530
AccI	GTMKAC	2 cut(s)	1293, 1898
AccII	CGCG	1 cut(s)	896
AccIII	TCCGGA	3 cut(s)	409, 1516, 1693
AciI	CCGC	4 cut(s)	421, 448, 1528, 2216
AclWI	GGATC	3 cut(s)	1027, 1481, 1494
AcoI	YGGCCR	2 cut(s)	351, 1204
AcsI	RAATTY	4 cut(s)	26, 1404, 1446, 2201
AcuI	CTGAAG	6 cut(s)	27, 597, 1023, 1445, 1658, 1704
AfaI	GTAC	8 cut(s)	169, 633, 852, 1125, 1138, 1513, 2040, 2142
AfiI	CCNNNNNNNGG	5 cut(s)	511, 941, 1133, 1707, 2048
AgsI	TTSAA	9 cut(s)	17, 701, 1348, 1399, 1451, 1552, 1884, 2095, 2122
AhdI	GACNNNNNGTC	1 cut(s)	1250
AjnI	CCWGG	3 cut(s)	940, 1492, 2070
AjuI	GAANNNNNNNTTGG	4 cut(s)	687, 719, 1200, 1232
AleI	CACNNNNGTG	1 cut(s)	1607
Alw21I	GWGCWC	2 cut(s)	199, 1101
Alw26I	GTCTC	2 cut(s)	151, 1258
AlwI	GGATC	3 cut(s)	1027, 1481, 1494
Ama87I	CYCGRG	3 cut(s)	333, 1144, 2048
Aor13HI	TCCGGA	3 cut(s)	409, 1516, 1693
AoxI	GGCC	3 cut(s)	351, 1204, 1279
ApeKI	GCWGC	1 cut(s)	1046
ApoI	RAATTY	4 cut(s)	26, 1404, 1446, 2201
Asp700I	GAANNNNTTC	1 cut(s)	1446
AspLEI	GCGC	2 cut(s)	898, 1423
AspS9I	GGNCC	4 cut(s)	284, 1279, 1388, 1752
AsuC2I	CCSGG	5 cut(s)	1145, 1146, 1158, 2049, 2050
AsuHPI	GGTGA	5 cut(s)	553, 932, 1643, 2110, 2174
AsuNHI	GCTAGC	1 cut(s)	1544
AvaI	CYCGRG	3 cut(s)	333, 1144, 2048
AvaII	GGWCC	3 cut(s)	284, 1388, 1752
BaeGI	GKGCMC	1 cut(s)	607
BalI	TGGCCA	2 cut(s)	353, 1206
BamHI	GGATCC	1 cut(s)	1486
BanI	GGYRCC	2 cut(s)	931, 1609
BanII	GRGCYC	1 cut(s)	1714
BarI	GAAGNNNNNNTAC	2 cut(s)	996, 1028
BauI	CACGAG	2 cut(s)	657, 1764
Bbv12I	GWGCWC	2 cut(s)	199, 1101
BbvCI	CCTCAGC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	1058
BccI	CCATC	5 cut(s)	82, 1046, 1186, 1313, 1736
BceAI	ACGGC	1 cut(s)	1749
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	3 cut(s)	942, 1494, 2072
BciVI	GTATCC	1 cut(s)	91
BclI	TGATCA	1 cut(s)	922
BcnI	CCSGG	5 cut(s)	1145, 1146, 1158, 2049, 2050
BcoDI	GTCTC	2 cut(s)	151, 1258
BfaI	CTAG	6 cut(s)	438, 582, 1110, 1545, 2000, 2006
BfmI	CTRYAG	1 cut(s)	1614
BfoI	RGCGCY	1 cut(s)	1424
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	1 cut(s)	1047
BlsI	GCNGC	1 cut(s)	1048
Bme1390I	CCNGG	8 cut(s)	942, 1145, 1146, 1158, 1494, 2049, 2050, 2072
Bme18I	GGWCC	3 cut(s)	284, 1388, 1752
BmeRI	GACNNNNNGTC	1 cut(s)	1250
BmeT110I	CYCGRG	3 cut(s)	333, 1144, 2048
BmgT120I	GGNCC	4 cut(s)	284, 1279, 1388, 1752
BmiI	GGNNCC	6 cut(s)	933, 982, 1488, 1611, 1754, 2089
BmrFI	CCNGG	8 cut(s)	942, 1145, 1146, 1158, 1494, 2049, 2050, 2072
BmrI	ACTGGG	2 cut(s)	134, 180
BmsI	GCATC	5 cut(s)	866, 958, 1262, 2065, 2175
BmtI	GCTAGC	1 cut(s)	1548
BmuI	ACTGGG	2 cut(s)	134, 180
BplI	GAGNNNNNCTC	2 cut(s)	981, 1013
BpmI	CTGGAG	2 cut(s)	183, 1308
Bpu10I	CCTNAGC	1 cut(s)	93
BpuEI	CTTGAG	3 cut(s)	842, 1006, 1268
BpuMI	CCSGG	5 cut(s)	1145, 1146, 1158, 2049, 2050
Bsa29I	ATCGAT	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	1037
BsaI	GGTCTC	2 cut(s)	151, 1258
BsaWI	WCCGGW	4 cut(s)	409, 486, 1516, 1693
BsaXI	ACNNNNNCTCC	4 cut(s)	2019, 2049, 2072, 2102
Bsc4I	CCNNNNNNNGG	5 cut(s)	511, 941, 1133, 1707, 2048
Bse1I	ACTGG	7 cut(s)	129, 175, 184, 200, 1102, 1650, 1689
Bse3DI	GCAATG	2 cut(s)	762, 2201
Bse8I	GATNNNNATC	1 cut(s)	1037
BseAI	TCCGGA	3 cut(s)	409, 1516, 1693
BseBI	CCWGG	3 cut(s)	942, 1494, 2072
BseCI	ATCGAT	1 cut(s)	468
BseJI	GATNNNNATC	1 cut(s)	1037
BseLI	CCNNNNNNNGG	5 cut(s)	511, 941, 1133, 1707, 2048
BseMI	GCAATG	2 cut(s)	762, 2201
BseMII	CTCAG	2 cut(s)	84, 855
BseNI	ACTGG	7 cut(s)	129, 175, 184, 200, 1102, 1650, 1689
BseRI	GAGGAG	1 cut(s)	1293
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	1058
BseYI	CCCAGC	1 cut(s)	1161
BsgI	GTGCAG	2 cut(s)	606, 870
Bsh1236I	CGCG	1 cut(s)	896
BshFI	GGCC	3 cut(s)	353, 1206, 1281
BshNI	GGYRCC	2 cut(s)	931, 1609
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	199, 1101
BsiHKCI	CYCGRG	3 cut(s)	333, 1144, 2048
BsiSI	CCGG	7 cut(s)	410, 487, 1145, 1158, 1517, 1694, 2049
BslFI	GGGAC	6 cut(s)	488, 665, 958, 1257, 1738, 2065
BslI	CCNNNNNNNGG	5 cut(s)	511, 941, 1133, 1707, 2048
BsmAI	GTCTC	2 cut(s)	151, 1258
BsmFI	GGGAC	6 cut(s)	488, 665, 958, 1257, 1738, 2065
BsnI	GGCC	3 cut(s)	353, 1206, 1281
Bso31I	GGTCTC	2 cut(s)	151, 1258
BsoBI	CYCGRG	3 cut(s)	333, 1144, 2048
Bsp1286I	GDGCHC	4 cut(s)	199, 607, 1101, 1714
Bsp13I	TCCGGA	3 cut(s)	409, 1516, 1693
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
BspACI	CCGC	4 cut(s)	421, 448, 1528, 2216
BspANI	GGCC	3 cut(s)	353, 1206, 1281
BspCNI	CTCAG	2 cut(s)	85, 856
BspDI	ATCGAT	1 cut(s)	468
BspEI	TCCGGA	3 cut(s)	409, 1516, 1693
BspFNI	CGCG	1 cut(s)	896
BspLI	GGNNCC	6 cut(s)	933, 982, 1488, 1611, 1754, 2089
BspOI	GCTAGC	1 cut(s)	1548
BspPI	GGATC	3 cut(s)	1027, 1481, 1494
BspQI	GCTCTTC	2 cut(s)	204, 519
BspT107I	GGYRCC	2 cut(s)	931, 1609
BspTNI	GGTCTC	2 cut(s)	151, 1258
BsrBI	CCGCTC	2 cut(s)	423, 1530
BsrDI	GCAATG	2 cut(s)	762, 2201
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	7 cut(s)	129, 175, 184, 200, 1102, 1650, 1689
BssMI	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
BssSI	CACGAG	2 cut(s)	657, 1764
BssT1I	CCWWGG	4 cut(s)	1220, 1506, 2023, 2229
Bst2BI	CACGAG	2 cut(s)	657, 1764
Bst2UI	CCWGG	3 cut(s)	942, 1494, 2072
Bst4CI	ACNGT	1 cut(s)	1136
Bst6I	CTCTTC	5 cut(s)	64, 204, 519, 1166, 1474
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	7 cut(s)	216, 237, 421, 774, 900, 1204, 1546
BstDEI	CTNAG	4 cut(s)	93, 864, 951, 1971
BstDSI	CCRYGG	1 cut(s)	1132
BstFNI	CGCG	1 cut(s)	896
BstH2I	RGCGCY	1 cut(s)	1424
BstHHI	GCGC	2 cut(s)	898, 1423
BstKTI	GATC	5 cut(s)	472, 925, 1035, 1489, 1579
BstMAI	GTCTC	2 cut(s)	151, 1258
BstMBI	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
BstMWI	GCNNNNNNNGC	5 cut(s)	535, 752, 893, 1962, 2000
BstNI	CCWGG	3 cut(s)	942, 1494, 2072
BstNSI	RCATGY	2 cut(s)	239, 611
BstSCI	CCNGG	8 cut(s)	940, 1143, 1144, 1156, 1492, 2047, 2048, 2070
BstSFI	CTRYAG	1 cut(s)	1614
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	1 cut(s)	896
BstV1I	GCAGC	1 cut(s)	1058
BstX2I	RGATCY	1 cut(s)	1486
BstXI	CCANNNNNNTGG	1 cut(s)	2159
BstYI	RGATCY	1 cut(s)	1486
Bsu15I	ATCGAT	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	353, 1206, 1281
BsuTUI	ATCGAT	1 cut(s)	468
BtgI	CCRYGG	1 cut(s)	1132
BtsIMutI	CAGTG	3 cut(s)	211, 999, 1109
Cac8I	GCNNGC	7 cut(s)	216, 237, 421, 774, 900, 1204, 1546
CfoI	GCGC	2 cut(s)	898, 1423
Cfr13I	GGNCC	4 cut(s)	284, 1279, 1388, 1752
Cfr9I	CCCGGG	2 cut(s)	1144, 2048
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	1544
Csp6I	GTAC	8 cut(s)	168, 632, 851, 1124, 1137, 1512, 2039, 2141
CspCI	CAANNNNNGTGG	8 cut(s)	343, 378, 623, 658, 1447, 1482, 1730, 1765
CviAII	CATG	9 cut(s)	236, 608, 872, 926, 1276, 1533, 1715, 1957, 2010
CviQI	GTAC	8 cut(s)	168, 632, 851, 1124, 1137, 1512, 2039, 2141
DdeI	CTNAG	4 cut(s)	93, 864, 951, 1971
DpnI	GATC	5 cut(s)	471, 924, 1034, 1488, 1578
DpnII	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
DrdI	GACNNNNNNGTC	1 cut(s)	500
DriI	GACNNNNNGTC	1 cut(s)	1250
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	351, 1204
Eam1104I	CTCTTC	5 cut(s)	64, 204, 519, 1166, 1474
Eam1105I	GACNNNNNGTC	1 cut(s)	1250
EarI	CTCTTC	5 cut(s)	64, 204, 519, 1166, 1474
EciI	GGCGGA	1 cut(s)	2205
Eco130I	CCWWGG	4 cut(s)	1220, 1506, 2023, 2229
Eco24I	GRGCYC	1 cut(s)	1714
Eco31I	GGTCTC	2 cut(s)	151, 1258
Eco32I	GATATC	1 cut(s)	1023
Eco47I	GGWCC	3 cut(s)	284, 1388, 1752
Eco57I	CTGAAG	6 cut(s)	27, 597, 1023, 1445, 1658, 1704
Eco88I	CYCGRG	3 cut(s)	333, 1144, 2048
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	3 cut(s)	940, 1492, 2070
EcoRV	GATATC	1 cut(s)	1023
EcoT14I	CCWWGG	4 cut(s)	1220, 1506, 2023, 2229
EcoT22I	ATGCAT	2 cut(s)	241, 1277
EcoT38I	GRGCYC	1 cut(s)	1714
ErhI	CCWWGG	4 cut(s)	1220, 1506, 2023, 2229
FaeI	CATG	9 cut(s)	239, 611, 875, 929, 1279, 1536, 1718, 1960, 2013
FalI	AAGNNNNNCTT	2 cut(s)	1864, 1896
FaqI	GGGAC	6 cut(s)	488, 665, 958, 1257, 1738, 2065
FatI	CATG	9 cut(s)	235, 607, 871, 925, 1275, 1532, 1714, 1956, 2009
FauI	CCCGC	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	922
FblI	GTMKAC	2 cut(s)	1293, 1898
Fnu4HI	GCNGC	1 cut(s)	1047
FriOI	GRGCYC	1 cut(s)	1714
Fsp4HI	GCNGC	1 cut(s)	1047
FspBI	CTAG	6 cut(s)	438, 582, 1110, 1545, 2000, 2006
GlaI	GCGC	2 cut(s)	897, 1422
GluI	GCNGC	1 cut(s)	1047
GsaI	CCCAGC	1 cut(s)	1165
GsuI	CTGGAG	2 cut(s)	183, 1308
HaeII	RGCGCY	1 cut(s)	1424
HaeIII	GGCC	3 cut(s)	353, 1206, 1281
HapII	CCGG	7 cut(s)	410, 487, 1145, 1158, 1517, 1694, 2049
HgaI	GACGC	1 cut(s)	1544
HhaI	GCGC	2 cut(s)	898, 1423
Hin1II	CATG	9 cut(s)	239, 611, 875, 929, 1279, 1536, 1718, 1960, 2013
Hin6I	GCGC	2 cut(s)	896, 1421
HinP1I	GCGC	2 cut(s)	896, 1421
HincII	GTYRAC	2 cut(s)	460, 1899
HindII	GTYRAC	2 cut(s)	460, 1899
HindIII	AAGCTT	1 cut(s)	152
HpaII	CCGG	7 cut(s)	410, 487, 1145, 1158, 1517, 1694, 2049
HphI	GGTGA	5 cut(s)	553, 932, 1643, 2110, 2174
Hpy166II	GTNNAC	8 cut(s)	168, 177, 284, 460, 1294, 1567, 1600, 1899
Hpy188I	TCNGA	8 cut(s)	274, 444, 577, 1027, 1186, 1415, 1684, 2237
Hpy8I	GTNNAC	8 cut(s)	168, 177, 284, 460, 1294, 1567, 1600, 1899
HpyAV	CCTTC	3 cut(s)	1649, 1890, 2089
HpyCH4III	ACNGT	1 cut(s)	1136
HpyF10VI	GCNNNNNNNGC	5 cut(s)	535, 752, 893, 1962, 2000
HpyF3I	CTNAG	4 cut(s)	93, 864, 951, 1971
Hsp92II	CATG	9 cut(s)	239, 611, 875, 929, 1279, 1536, 1718, 1960, 2013
HspAI	GCGC	2 cut(s)	896, 1421
Kpn2I	TCCGGA	3 cut(s)	409, 1516, 1693
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
LguI	GCTCTTC	2 cut(s)	204, 519
LmnI	GCTCC	4 cut(s)	202, 428, 1801, 2093
Lsp1109I	GCAGC	1 cut(s)	1058
LweI	GCATC	5 cut(s)	866, 958, 1262, 2065, 2175
MaeI	CTAG	6 cut(s)	438, 582, 1110, 1545, 2000, 2006
MaeIII	GTNAC	2 cut(s)	712, 2162
MalI	GATC	5 cut(s)	471, 924, 1034, 1488, 1578
MbiI	CCGCTC	2 cut(s)	423, 1530
MboI	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
MfeI	CAATTG	1 cut(s)	1782
MflI	RGATCY	1 cut(s)	1486
MhlI	GDGCHC	4 cut(s)	199, 607, 1101, 1714
MlsI	TGGCCA	2 cut(s)	353, 1206
MluNI	TGGCCA	2 cut(s)	353, 1206
MlyI	GAGTC	4 cut(s)	649, 1183, 1299, 1756
MmeI	TCCRAC	2 cut(s)	1393, 1456
Mox20I	TGGCCA	2 cut(s)	353, 1206
Mph1103I	ATGCAT	2 cut(s)	241, 1277
MroI	TCCGGA	3 cut(s)	409, 1516, 1693
MroXI	GAANNNNTTC	1 cut(s)	1446
MscI	TGGCCA	2 cut(s)	353, 1206
MseI	TTAA	7 cut(s)	320, 399, 1068, 1074, 1088, 1227, 2064
MslI	CAYNNNNRTG	5 cut(s)	294, 918, 1398, 1607, 2008
Msp20I	TGGCCA	2 cut(s)	353, 1206
MspA1I	CMGCKG	1 cut(s)	1376
MspI	CCGG	7 cut(s)	410, 487, 1145, 1158, 1517, 1694, 2049
MspR9I	CCNGG	8 cut(s)	942, 1145, 1146, 1158, 1494, 2049, 2050, 2072
MunI	CAATTG	1 cut(s)	1782
MvaI	CCWGG	3 cut(s)	942, 1494, 2072
MvnI	CGCG	1 cut(s)	896
MwoI	GCNNNNNNNGC	5 cut(s)	535, 752, 893, 1962, 2000
NciI	CCSGG	5 cut(s)	1145, 1146, 1158, 2049, 2050
NdeII	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
NheI	GCTAGC	1 cut(s)	1544
NlaIII	CATG	9 cut(s)	239, 611, 875, 929, 1279, 1536, 1718, 1960, 2013
NlaIV	GGNNCC	6 cut(s)	933, 982, 1488, 1611, 1754, 2089
NmuCI	GTSAC	2 cut(s)	712, 2162
NsiI	ATGCAT	2 cut(s)	241, 1277
NspI	RCATGY	2 cut(s)	239, 611
OliI	CACNNNNGTG	1 cut(s)	1607
PaeI	GCATGC	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	333
PasI	CCCWGGG	1 cut(s)	941
PciSI	GCTCTTC	2 cut(s)	204, 519
PdmI	GAANNNNTTC	1 cut(s)	1446
PfeI	GAWTC	8 cut(s)	138, 183, 646, 835, 1153, 1323, 1356, 2225
PflFI	GACNNNGTC	1 cut(s)	2153
PkrI	GCNGC	1 cut(s)	1048
PleI	GAGTC	4 cut(s)	649, 1182, 1298, 1756
PpsI	GAGTC	4 cut(s)	649, 1182, 1298, 1756
Psp6I	CCWGG	3 cut(s)	940, 1492, 2070
PspFI	CCCAGC	1 cut(s)	1161
PspGI	CCWGG	3 cut(s)	940, 1492, 2070
PspN4I	GGNNCC	6 cut(s)	933, 982, 1488, 1611, 1754, 2089
PspPI	GGNCC	4 cut(s)	284, 1279, 1388, 1752
PsuI	RGATCY	1 cut(s)	1486
PsyI	GACNNNGTC	1 cut(s)	2153
PvuII	CAGCTG	1 cut(s)	1376
RsaI	GTAC	8 cut(s)	169, 633, 852, 1125, 1138, 1513, 2040, 2142
RsaNI	GTAC	8 cut(s)	168, 632, 851, 1124, 1137, 1512, 2039, 2141
RseI	CAYNNNNRTG	5 cut(s)	294, 918, 1398, 1607, 2008
SalI	GTCGAC	1 cut(s)	1897
SapI	GCTCTTC	2 cut(s)	204, 519
SaqAI	TTAA	7 cut(s)	320, 399, 1068, 1074, 1088, 1227, 2064
SatI	GCNGC	1 cut(s)	1047
Sau3AI	GATC	5 cut(s)	469, 922, 1032, 1486, 1576
Sau96I	GGNCC	4 cut(s)	284, 1279, 1388, 1752
SchI	GAGTC	4 cut(s)	649, 1183, 1299, 1756
ScrFI	CCNGG	8 cut(s)	942, 1145, 1146, 1158, 1494, 2049, 2050, 2072
SduI	GDGCHC	4 cut(s)	199, 607, 1101, 1714
SfaNI	GCATC	5 cut(s)	866, 958, 1262, 2065, 2175
SfcI	CTRYAG	1 cut(s)	1614
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	3 cut(s)	284, 1388, 1752
SlaI	CTCGAG	1 cut(s)	333
SmaI	CCCGGG	2 cut(s)	1146, 2050
SmiMI	CAYNNNNRTG	5 cut(s)	294, 918, 1398, 1607, 2008
SmlI	CTYRAG	4 cut(s)	333, 821, 985, 1247
SmoI	CTYRAG	4 cut(s)	333, 821, 985, 1247
SphI	GCATGC	1 cut(s)	239
SsiI	CCGC	4 cut(s)	421, 448, 1528, 2216
SspI	AATATT	1 cut(s)	964
SspMI	CTAG	6 cut(s)	438, 582, 1110, 1545, 2000, 2006
StyD4I	CCNGG	8 cut(s)	940, 1143, 1144, 1156, 1492, 2047, 2048, 2070
StyI	CCWWGG	4 cut(s)	1220, 1506, 2023, 2229
TaaI	ACNGT	1 cut(s)	1136
TaqI	TCGA	6 cut(s)	141, 334, 468, 1151, 1898, 2148
TatI	WGTACW	3 cut(s)	167, 631, 850
TfiI	GAWTC	8 cut(s)	138, 183, 646, 835, 1153, 1323, 1356, 2225
Tru1I	TTAA	7 cut(s)	320, 399, 1068, 1074, 1088, 1227, 2064
Tru9I	TTAA	7 cut(s)	320, 399, 1068, 1074, 1088, 1227, 2064
TscAI	CASTG	3 cut(s)	211, 1006, 1109
TseFI	GTSAC	2 cut(s)	712, 2162
TseI	GCWGC	1 cut(s)	1046
Tsp45I	GTSAC	2 cut(s)	712, 2162
TspDTI	ATGAA	8 cut(s)	312, 354, 605, 902, 1212, 1416, 1712, 1903
TspMI	CCCGGG	2 cut(s)	1144, 2048
TspRI	CASTG	3 cut(s)	211, 1006, 1109
Tth111I	GACNNNGTC	1 cut(s)	2153
VpaK11BI	GGWCC	3 cut(s)	284, 1388, 1752
XapI	RAATTY	4 cut(s)	26, 1404, 1446, 2201
XceI	RCATGY	2 cut(s)	239, 611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1109
XhoI	CTCGAG	1 cut(s)	333
XmaI	CCCGGG	2 cut(s)	1144, 2048
XmiI	GTMKAC	2 cut(s)	1293, 1898
XmnI	GAANNNNTTC	1 cut(s)	1446
XspI	CTAG	6 cut(s)	438, 582, 1110, 1545, 2000, 2006
Zsp2I	ATGCAT	2 cut(s)	241, 1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.