Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2452674 .. 2455121

Gene Structure 2448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0031300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGAACAGAAGGAAATACAGATCCCAAAGGTTAAACTTGGAACTCAAGGGTTTGTGGTTTCAAAATTGGGGTTTGGATGCATGGGTTTGACTTTTGTCAAGTATCCTGGTGCTGAAGAGGATGGAATCTCCATTATAAAGCATGCCTTCAGTAAAGGAATCACTTTCTTTGACACATCTGATATGTATGGAACTGATCATGCCAATGAAATTCTTGTTGGCAAGGCCTTGAATCAATTGCCAAGAGAAAAGGTTCAATTAGCCACGAAGGCACGAAGTTTGGTGTTGGTTCCTTCTCGTTTTGTGGTAAACGGAACTCCGGAGTATGTCCGGTCATGTTGCGAGGCTAGCTTGAAGCGTCTTGGTGTCGACTACATTGATCTGTACTATTATCACCGCATTGACCAGACGGTGCCGATAGAGGAAACTATGGGGGAGCTGAAGAAACTTGTTGAAGAAGGAAAGATCAAGTATATTGGGGAGCGTGGCATTGGAATTGTTCCATATTGTCCTCTTGGTTGTGGTTTTTTCGCAGGCAAAGCAGTTGTTGAAAGTTTGGATCCAAATGTTCCTGCGCATCATTGCTCTCCTGCTCAACTAGCACTGTCGTGGGTTCTCCACCGAGGTGATGACGTTGTACCAATCCCCGGGACAACAAAGATTAAGAACTTGGATACCAACATTGGCTCCTTAAGTCTGCATCTCAAGGAAGACGACCTCAAAGAAATCTCTGATGCTGTTCCACTCGACCAAGTAGCTGGTGATAGGAGTTTTGAAAGCATAAGTCATGTGCAATGGAAATTCGCCAACACTCCTCAAAAGACTCTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

278

Amino Acids

30.63

Weight (kDa)

6.25

Isoelectric Point (pI)

31.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	23 - 161	9.9e-36	Aldo/keto reductase family
Aldo_ket_red	PF00248	164 - 246	7.1e-09	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
Acc16I	TGCGCA	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	372
AccIII	TCCGGA	1 cut(s)	322
AciI	CCGC	1 cut(s)	400
AclWI	GGATC	3 cut(s)	19, 557, 570
AcsI	RAATTY	2 cut(s)	213, 803
AcuI	CTGAAG	3 cut(s)	136, 138, 464
AfaI	GTAC	2 cut(s)	389, 642
AfiI	CCNNNNNNNGG	1 cut(s)	650
AflII	CTTAAG	1 cut(s)	694
AgsI	TTSAA	7 cut(s)	66, 235, 260, 358, 458, 554, 779
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AleI	CACNNNNGTG	2 cut(s)	610, 627
AluBI	AGCT	3 cut(s)	354, 442, 761
AluI	AGCT	3 cut(s)	354, 442, 761
AlwI	GGATC	3 cut(s)	19, 557, 570
Ama87I	CYCGRG	1 cut(s)	650
Aor13HI	TCCGGA	1 cut(s)	322
AoxI	GGCC	1 cut(s)	228
ApoI	RAATTY	2 cut(s)	213, 803
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	580
AsuC2I	CCSGG	2 cut(s)	651, 652
AsuHPI	GGTGA	3 cut(s)	389, 641, 776
AsuNHI	GCTAGC	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	562
BanI	GGYRCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	720
BccI	CCATC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	2 cut(s)	117, 670
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	2 cut(s)	651, 652
BfaI	CTAG	2 cut(s)	351, 602
BfrI	CTTAAG	1 cut(s)	694
BfuI	GTATCC	2 cut(s)	117, 670
BglI	GCCNNNNNGGC	1 cut(s)	272
Bme1390I	CCNGG	3 cut(s)	111, 651, 652
BmeT110I	CYCGRG	1 cut(s)	650
BmiI	GGNNCC	4 cut(s)	294, 417, 564, 691
BmrFI	CCNGG	3 cut(s)	111, 651, 652
BmsI	GCATC	4 cut(s)	71, 589, 712, 727
BmtI	GCTAGC	1 cut(s)	354
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	720
BpuEI	CTTGAG	2 cut(s)	33, 692
BpuMI	CCSGG	2 cut(s)	651, 652
BsaJI	CCNNGG	3 cut(s)	625, 649, 650
BsaWI	WCCGGW	2 cut(s)	322, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	674, 704
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse3DI	GCAATG	2 cut(s)	583, 803
BseAI	TCCGGA	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	625, 649, 650
BseGI	GGATG	2 cut(s)	86, 130
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	2 cut(s)	583, 803
BseRI	GAGGAG	1 cut(s)	807
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	3 cut(s)	323, 334, 651
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	667
BsnI	GGCC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	24, 199, 382, 468, 562
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	1 cut(s)	230
BspEI	TCCGGA	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	294, 417, 564, 691
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	3 cut(s)	19, 557, 570
BspT107I	GGYRCC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	694
BsrDI	GCAATG	2 cut(s)	583, 803
BssECI	CCNNGG	3 cut(s)	625, 649, 650
BssMI	GATC	5 cut(s)	24, 199, 382, 468, 562
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	415, 609
Bst6I	CTCTTC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	147, 352, 538
BstF5I	GGATG	2 cut(s)	86, 130
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	5 cut(s)	27, 202, 385, 471, 565
BstMBI	GATC	5 cut(s)	24, 199, 382, 468, 562
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 351, 542, 602
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	109, 649, 650
BstV2I	GAAGAC	1 cut(s)	720
BstX2I	RGATCY	2 cut(s)	24, 562
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	2 cut(s)	24, 562
BsuI	GTATCC	2 cut(s)	117, 670
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	2 cut(s)	86, 130
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	3 cut(s)	147, 352, 538
CfoI	GCGC	1 cut(s)	580
Cfr9I	CCCGGG	1 cut(s)	650
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	388, 641
CviAII	CATG	5 cut(s)	85, 146, 203, 339, 791
CviJI	RGCY	8 cut(s)	5, 230, 266, 350, 354, 442, 690, 761
CviKI_1	RGCY	8 cut(s)	5, 230, 266, 350, 354, 442, 690, 761
CviQI	GTAC	2 cut(s)	388, 641
DpnI	GATC	5 cut(s)	26, 201, 384, 470, 564
DpnII	GATC	5 cut(s)	24, 199, 382, 468, 562
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	136, 138, 464
Eco88I	CYCGRG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	86
FaeI	CATG	5 cut(s)	88, 149, 206, 342, 794
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	5 cut(s)	84, 145, 202, 338, 790
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	2 cut(s)	93, 137
FspBI	CTAG	2 cut(s)	351, 602
FspI	TGCGCA	1 cut(s)	579
GlaI	GCGC	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	3 cut(s)	323, 334, 651
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	5 cut(s)	88, 149, 206, 342, 794
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	4 cut(s)	129, 162, 235, 826
HpaII	CCGG	3 cut(s)	323, 334, 651
HphI	GGTGA	3 cut(s)	389, 641, 776
Hpy166II	GTNNAC	2 cut(s)	313, 373
Hpy188I	TCNGA	3 cut(s)	184, 736, 831
Hpy188III	TCNNGA	1 cut(s)	323
Hpy8I	GTNNAC	2 cut(s)	313, 373
HpyAV	CCTTC	5 cut(s)	7, 160, 265, 306, 455
HpyCH4III	ACNGT	2 cut(s)	415, 609
HpyCH4IV	ACGT	1 cut(s)	636
HpyCH4V	TGCA	3 cut(s)	84, 703, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 351, 542, 602
HpySE526I	ACGT	1 cut(s)	636
Hsp92II	CATG	5 cut(s)	88, 149, 206, 342, 794
HspAI	GCGC	1 cut(s)	578
Kpn2I	TCCGGA	1 cut(s)	322
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	24, 199, 382, 468, 562
LmnI	GCTCC	3 cut(s)	439, 484, 695
LweI	GCATC	4 cut(s)	71, 589, 712, 727
MaeI	CTAG	2 cut(s)	351, 602
MaeII	ACGT	1 cut(s)	636
MalI	GATC	5 cut(s)	26, 201, 384, 470, 564
MboI	GATC	5 cut(s)	24, 199, 382, 468, 562
MboII	GAAGA	4 cut(s)	131, 457, 470, 725
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	2 cut(s)	24, 562
MluCI	AATT	7 cut(s)	68, 213, 239, 260, 498, 803, 832
MlyI	GAGTC	1 cut(s)	820
MnlI	CCTC	7 cut(s)	115, 340, 418, 525, 620, 731, 828
Mph1103I	ATGCAT	1 cut(s)	86
MroI	TCCGGA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	255
MseI	TTAA	3 cut(s)	36, 666, 695
MslI	CAYNNNNRTG	3 cut(s)	207, 610, 627
MspCI	CTTAAG	1 cut(s)	694
MspI	CCGG	3 cut(s)	323, 334, 651
MspR9I	CCNGG	3 cut(s)	111, 651, 652
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	272, 351, 542, 602
NciI	CCSGG	2 cut(s)	651, 652
NdeII	GATC	5 cut(s)	24, 199, 382, 468, 562
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	5 cut(s)	88, 149, 206, 342, 794
NlaIV	GGNNCC	4 cut(s)	294, 417, 564, 691
NsbI	TGCGCA	1 cut(s)	579
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	1 cut(s)	149
OliI	CACNNNNGTG	2 cut(s)	610, 627
PaeI	GCATGC	1 cut(s)	149
PceI	AGGCCT	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	3 cut(s)	129, 162, 235
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PshAI	GACNNNNGTC	1 cut(s)	98
PsiI	TTATAA	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	294, 417, 564, 691
PsuI	RGATCY	2 cut(s)	24, 562
RsaI	GTAC	2 cut(s)	389, 642
RsaNI	GTAC	2 cut(s)	388, 641
RseI	CAYNNNNRTG	3 cut(s)	207, 610, 627
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	36, 666, 695
Sau3AI	GATC	5 cut(s)	24, 199, 382, 468, 562
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	3 cut(s)	111, 651, 652
SetI	ASST	8 cut(s)	36, 258, 356, 444, 631, 639, 723, 763
SfaNI	GCATC	4 cut(s)	71, 589, 712, 727
SmaI	CCCGGG	1 cut(s)	652
SmiMI	CAYNNNNRTG	3 cut(s)	207, 610, 627
SmlI	CTYRAG	3 cut(s)	48, 694, 707
SmoI	CTYRAG	3 cut(s)	48, 694, 707
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	7 cut(s)	68, 213, 239, 260, 498, 803, 832
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	400
SspMI	CTAG	2 cut(s)	351, 602
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	3 cut(s)	109, 649, 650
TaaI	ACNGT	2 cut(s)	415, 609
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	372, 750
TasI	AATT	7 cut(s)	68, 213, 239, 260, 498, 803, 832
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	3 cut(s)	129, 162, 235
Tru1I	TTAA	3 cut(s)	36, 666, 695
Tru9I	TTAA	3 cut(s)	36, 666, 695
TscAI	CASTG	1 cut(s)	612
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	330
TspMI	CCCGGG	1 cut(s)	650
TspRI	CASTG	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	694
XapI	RAATTY	2 cut(s)	213, 803
XceI	RCATGY	1 cut(s)	149
XmaI	CCCGGG	1 cut(s)	650
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	351, 602
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.