Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

2429083 .. 2429889

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0031000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTCGATGTCGAAGAGCTCCAAGATGCTCCAGTTCATCAACTACCGCATGAGAGTGACGATCCAGGACGGCCGTCAGCTCGTCGGAAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGGAAGCTTCCCCCGGCCAAAGGCTCTGCCGCCAAGAAGAACACCAACACCAACGAGGACCGCGACGACCGCCGCACTCTCGGCCTCGTCCTCCTCCGCGGCGAGGAGGTCATCTCCATGACCGTCGAGGGCCCGCCGCCTCAGGAGGAGTCACGCGCCAAGGCCGCGAGTGCCGCCGCTCTTTCCGGCTCCGGAATCGGACGCGCCGCCGGCAGGGGGATCGTGACTCCTCCCGTGGCCCAGGCCCAGCCCGGTCTCTCCGGCCCCGTCCGCGGCGTTGGCGGTCCCGCTCCCGGCATGATGCAGCCTCAGATGTCTCGCCCTAACCTCTCGGCGCCTCCGATGACGTATCCGGCTGCTCCGGTGATCCGTCCCCCGCCGCAGATGTATCCTGGCCAGGGACCACCACCGATGGTGCGTGGCCCGCCGCCGCAGTTTCCTCCTCCCGGTGCTAGGCCCGGCGGTCCACCTCAGCAGTTTCCCGGTCCTCCGATGCAGTACGGGCAGAGACCAATGGGGCCTCTACCCCCGGGGCCTCCGGGGCAGATGATGAGGGGTCCACCACCTCGCCAAGGAATGCCTCCTCCTCCCGGTGTGTTTGGAGGACCTCCACGAGGAATGCCTCCGCCACCTCAGAACCCTAACCAGCAGCAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

268

Amino Acids

28.39

Weight (kDa)

11.03

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	9 - 89	2.7e-16	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	478
AccBSI	CCGCTC	2 cut(s)	323, 434
AccII	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
AccIII	TCCGGA	2 cut(s)	144, 335
AclWI	GGATC	3 cut(s)	55, 371, 505
AcoI	YGGCCR	3 cut(s)	70, 159, 538
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	644
AjnI	CCWGG	4 cut(s)	63, 384, 535, 540
AluBI	AGCT	3 cut(s)	18, 79, 151
AluI	AGCT	3 cut(s)	18, 79, 151
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	404, 465, 646
AlwI	GGATC	3 cut(s)	55, 371, 505
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	2 cut(s)	144, 335
ApaI	GGGCCC	1 cut(s)	278
ApeKI	GCWGC	4 cut(s)	448, 500, 793, 796
AspLEI	GCGC	3 cut(s)	302, 350, 481
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	7 cut(s)	202, 428, 545, 608, 629, 701, 749
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	20, 278
BauI	CACGAG	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	460, 487
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	2 cut(s)	57, 85
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	4 cut(s)	65, 386, 537, 542
BciVI	GTATCC	2 cut(s)	504, 543
BcoDI	GTCTC	3 cut(s)	404, 465, 646
BfaI	CTAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	482
BfuI	GTATCC	2 cut(s)	504, 543
BglI	GCCNNNNNGGC	1 cut(s)	685
Bme18I	GGWCC	7 cut(s)	202, 428, 545, 608, 629, 701, 749
BmeT110I	CYCGRG	1 cut(s)	673
BmiI	GGNNCC	9 cut(s)	276, 334, 409, 430, 480, 546, 663, 678, 702
BmsI	GCATC	3 cut(s)	15, 435, 627
BoxI	GACNNNNGTC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	2 cut(s)	404, 646
BsaWI	WCCGGW	3 cut(s)	144, 335, 505
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	285
BseAI	TCCGGA	2 cut(s)	144, 335
BseBI	CCWGG	4 cut(s)	65, 386, 537, 542
BseMII	CTCAG	4 cut(s)	299, 467, 629, 791
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	8 cut(s)	152, 227, 263, 305, 363, 576, 717, 720
BseSI	GKGCMC	1 cut(s)	278
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	460, 487
BseYI	CCCAGC	1 cut(s)	390
Bsh1236I	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
Bsh1285I	CGRYCG	3 cut(s)	73, 106, 214
BshNI	GGYRCC	1 cut(s)	478
BsiEI	CGRYCG	3 cut(s)	73, 106, 214
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	673
BslFI	GGGAC	3 cut(s)	414, 501, 558
BsmAI	GTCTC	3 cut(s)	404, 465, 646
BsmFI	GGGAC	3 cut(s)	414, 501, 558
BsmI	GAATGC	2 cut(s)	726, 768
Bso31I	GGTCTC	2 cut(s)	404, 646
BsoBI	CYCGRG	1 cut(s)	673
Bsp120I	GGGCCC	1 cut(s)	274
Bsp1286I	GDGCHC	2 cut(s)	20, 278
Bsp13I	TCCGGA	2 cut(s)	144, 335
Bsp143I	GATC	3 cut(s)	60, 363, 510
BspCNI	CTCAG	4 cut(s)	298, 466, 628, 790
BspEI	TCCGGA	2 cut(s)	144, 335
BspFNI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BspLI	GGNNCC	9 cut(s)	276, 334, 409, 430, 480, 546, 663, 678, 702
BspPI	GGATC	3 cut(s)	55, 371, 505
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	478
BspTNI	GGTCTC	2 cut(s)	404, 646
BsrBI	CCGCTC	2 cut(s)	323, 434
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	3 cut(s)	60, 363, 510
BssNI	GRCGYC	1 cut(s)	479
BssSI	CACGAG	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	303, 715
Bst2BI	CACGAG	1 cut(s)	756
Bst2UI	CCWGG	4 cut(s)	65, 386, 537, 542
Bst4CI	ACNGT	2 cut(s)	268, 804
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	479
BstC8I	GCNNGC	3 cut(s)	278, 355, 569
BstDEI	CTNAG	4 cut(s)	285, 453, 615, 777
BstDSI	CCRYGG	3 cut(s)	241, 378, 415
BstENI	CCTNNNNNAGG	2 cut(s)	714, 756
BstFNI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	3 cut(s)	302, 350, 481
BstKTI	GATC	3 cut(s)	63, 366, 513
BstMAI	GTCTC	3 cut(s)	404, 465, 646
BstMBI	GATC	3 cut(s)	60, 363, 510
BstMCI	CGRYCG	3 cut(s)	73, 106, 214
BstNI	CCWGG	4 cut(s)	65, 386, 537, 542
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BstV1I	GCAGC	2 cut(s)	460, 487
BstZI	CGGCCG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	2 cut(s)	504, 543
BtgI	CCRYGG	3 cut(s)	241, 378, 415
Cac8I	GCNNGC	3 cut(s)	278, 355, 569
CfoI	GCGC	3 cut(s)	302, 350, 481
Cfr10I	RCCGGY	1 cut(s)	353
Cfr42I	CCGCGG	2 cut(s)	244, 418
Cfr9I	CCCGGG	1 cut(s)	673
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	5 cut(s)	49, 94, 112, 262, 442
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	4 cut(s)	285, 453, 615, 777
DinI	GGCGCC	1 cut(s)	480
DpnI	GATC	3 cut(s)	62, 365, 512
DpnII	GATC	3 cut(s)	60, 363, 510
EaeI	YGGCCR	3 cut(s)	70, 159, 538
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	759
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	303, 715
Eco24I	GRGCYC	2 cut(s)	20, 278
Eco31I	GGTCTC	2 cut(s)	404, 646
Eco47I	GGWCC	7 cut(s)	202, 428, 545, 608, 629, 701, 749
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	673
EcoICRI	GAGCTC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	2 cut(s)	714, 756
EcoO109I	RGGNCCY	4 cut(s)	274, 662, 677, 749
EcoRII	CCWGG	4 cut(s)	63, 384, 535, 540
EcoT14I	CCWWGG	2 cut(s)	303, 715
EcoT38I	GRGCYC	2 cut(s)	20, 278
EgeI	GGCGCC	1 cut(s)	480
EheI	GGCGCC	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	303, 715
FaeI	CATG	5 cut(s)	52, 97, 115, 265, 445
FaiI	YATR	5 cut(s)	50, 95, 113, 263, 443
FaqI	GGGAC	3 cut(s)	414, 501, 558
FatI	CATG	5 cut(s)	48, 93, 111, 261, 441
FauI	CCCGC	4 cut(s)	285, 439, 528, 576
FriOI	GRGCYC	2 cut(s)	20, 278
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	3 cut(s)	301, 349, 480
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	482
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	3 cut(s)	302, 350, 481
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	5 cut(s)	52, 97, 115, 265, 445
Hin6I	GCGC	3 cut(s)	300, 348, 479
HinP1I	GCGC	3 cut(s)	300, 348, 479
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	3 cut(s)	293, 339, 370
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	611, 704
Hpy188I	TCNGA	6 cut(s)	86, 344, 456, 486, 636, 780
Hpy188III	TCNNGA	4 cut(s)	145, 287, 336, 367
Hpy8I	GTNNAC	2 cut(s)	611, 704
Hpy99I	CGWCG	3 cut(s)	86, 212, 272
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	268, 804
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	2 cut(s)	448, 640
HpyF3I	CTNAG	4 cut(s)	285, 453, 615, 777
HpySE526I	ACGT	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	5 cut(s)	52, 97, 115, 265, 445
HspAI	GCGC	3 cut(s)	300, 348, 479
KasI	GGCGCC	1 cut(s)	478
Kpn2I	TCCGGA	2 cut(s)	144, 335
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	2 cut(s)	244, 418
Kzo9I	GATC	3 cut(s)	60, 363, 510
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	5 cut(s)	23, 33, 338, 439, 508
Lsp1109I	GCAGC	2 cut(s)	460, 487
LweI	GCATC	3 cut(s)	15, 435, 627
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	3 cut(s)	55, 294, 367
MalI	GATC	3 cut(s)	62, 365, 512
MbiI	CCGCTC	2 cut(s)	323, 434
MboI	GATC	3 cut(s)	60, 363, 510
MboII	GAAGA	2 cut(s)	25, 193
MhlI	GDGCHC	2 cut(s)	20, 278
MlsI	TGGCCA	1 cut(s)	540
MluNI	TGGCCA	1 cut(s)	540
Mly113I	GGCGCC	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	302, 364
MmeI	TCCRAC	1 cut(s)	64
Mox20I	TGGCCA	1 cut(s)	540
MroI	TCCGGA	2 cut(s)	144, 335
MroNI	GCCGGC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	540
MslI	CAYNNNNRTG	2 cut(s)	53, 260
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	2 cut(s)	243, 417
Mva1269I	GAATGC	2 cut(s)	726, 768
MvaI	CCWGG	4 cut(s)	65, 386, 537, 542
MvnI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	1 cut(s)	479
NdeII	GATC	3 cut(s)	60, 363, 510
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	5 cut(s)	52, 97, 115, 265, 445
NlaIV	GGNNCC	9 cut(s)	276, 334, 409, 430, 480, 546, 663, 678, 702
NmeAIII	GCCGAG	3 cut(s)	105, 204, 455
NmuCI	GTSAC	3 cut(s)	55, 294, 367
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	4 cut(s)	126, 132, 204, 482
PctI	GAATGC	2 cut(s)	726, 768
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	63
PleI	GAGTC	2 cut(s)	301, 364
PluTI	GGCGCC	1 cut(s)	482
PpsI	GAGTC	2 cut(s)	301, 364
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	4 cut(s)	63, 384, 535, 540
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	4 cut(s)	63, 384, 535, 540
PspN4I	GGNNCC	9 cut(s)	276, 334, 409, 430, 480, 546, 663, 678, 702
PspOMI	GGGCCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	749
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	53, 260
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	2 cut(s)	244, 418
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	60, 363, 510
SchI	GAGTC	2 cut(s)	302, 364
SduI	GDGCHC	2 cut(s)	20, 278
SfaNI	GCATC	3 cut(s)	15, 435, 627
SfoI	GGCGCC	1 cut(s)	480
Sfr303I	CCGCGG	2 cut(s)	244, 418
SgrBI	CCGCGG	2 cut(s)	244, 418
SinI	GGWCC	7 cut(s)	202, 428, 545, 608, 629, 701, 749
SmaI	CCCGGG	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	53, 260
SspDI	GGCGCC	1 cut(s)	478
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	303, 715
TaaI	ACNGT	2 cut(s)	268, 804
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	4 cut(s)	5, 11, 102, 270
TfiI	GAWTC	1 cut(s)	339
TseFI	GTSAC	3 cut(s)	55, 294, 367
TseI	GCWGC	4 cut(s)	448, 500, 793, 796
Tsp45I	GTSAC	3 cut(s)	55, 294, 367
TspDTI	ATGAA	3 cut(s)	25, 82, 128
TspGWI	ACGGA	1 cut(s)	503
TspMI	CCCGGG	1 cut(s)	673
VpaK11BI	GGWCC	7 cut(s)	202, 428, 545, 608, 629, 701, 749
XagI	CCTNNNNNAGG	2 cut(s)	714, 756
XmaI	CCCGGG	1 cut(s)	673
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.