Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Forward (+)

7176961 .. 7184930

Gene Structure 7970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG092100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCCTTTATCGGAGCTATATCGAATGGGCAGAGGGAGGAGTGATTCGAATCCAGATTTCGAACCTGTGAATGATTTTGTTGAACTGGTATGGGAAAATGGGCAGATTATGATGCAAGGTCAATCCAGTAGAGCTAGAAAGAGTCCAACTTTTAACAGCTTACCATCTCACACCCCCAAGAATCGAGATAGAGATTTAGGAAATGGAACCAATGGGAAGATGGGGAAATTTGGGTCAGTGGACTCTGTGATGGATGAAATTGCATTGTCGGTGCCGTCTGTTGAAATGGGTTTGAGTGACGATGATGACATGTTGCCTTGGTTGAATTATGCCCTTGATCAACCTTTACAACATGAATATAGCCATGATTTTATGCCTGAAATATCTGGTGTCAATGCAAATGAGATTTCCACCAATGGCAATCTCGCATCAATCGAGAAAAGGAGTAGTTCTAGTCAGATATATAGGGAGTGCAGCCCCAATTCTACCCATGGAGGTGCTCTTTTGGAACAAAGGAATGTATCAAAACTTTCTTCAATAAGTGCTGCTGAGGTTAGCAGACCTAGAACTAGTTCTACTCACTTATACCAGATGTCATCACAGCAATCCCAAGCATCAATTCCATCTTTTAGATCAATCGCTTCGGATATGGTTGCTGTTAACACAAGTAGTGCCGACCATCATGCTGTTTGCAAGAATTCAATTCAGGCTTCACCTGCAGGTGGTTTTCCTGGCATAACAACGCAGAAACAAAATCCACCAACTCCTAGTAATAATAATTCAACCATAGTGAACTTTTCCCATTTCTCACGACCAGCTACTCTTGCAAAAGCCAATCTTCACAATAATGGTGCAACGTCTAGCTCGAGTTTAGTAAGGGTGGAAAAGATTGGAAATAAGGATAAGGTTTCAGTTGCAACTAGTAGCAATCCTCCTGAGTCGATACTAATTGAATCAAGCTGCAGTTTACTGAAGGAGTCAACTTCACAGTGCCAAGATGTTATGCCCCCCTCCAGTGTTGATATGAAACCAACCGCATCTAAGCCTCTTGAGGAACCACGTACTACTAAACAGTCTGAGGCTGCATATCAAGAGGATGCCTCTAAGAATGATGACACAAACTCCAATCATATTCCTTGTGAAAGCTCAATTAGGGCACTTCCAGATGCTGAAAAAACTACAGAGCCTGTGGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGAGAAAGCTTCAGATGATCCAGCACGTGCGTTGAAGAGAAAATCTCGTGATACTGATGACTCTGAATGCCATAGTGAAGATGTAGAGGAAGAATCTGTGGGCGTGAAAAAGGTAGCTCACGGTCGAGGTACAGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAACTTATCAGAAAGGAGGCGAAGGGATAGAATCAATGAAAAGATGCGGGCGCTTCAAGAACTCATACCTAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATTTGAAGACACTTCAACTCCAAGTACAGATTATGTCGATGGGAGCTGGTTTGTATATGCCACAGATGATGTTACCACCAGGAATGCAACACATGCATGCACCCCGTATGGCTCATTTCTCGCACATGGGTGTTGGAATGGGAATGGGATTGGGCATGGGTTTTGGGATGGGTATGCCTGACATGAATGGTGGATCTTCTGGTTACCCTATGCTTCAGGTGCCTCCTATGCAAGGTGCACATTTTCCTGGTTCACCAATGTCAGGGCATACTGCGTTCAATGGGATGGTAGGAGCTAACCTTCAGATGTTTGGGCTTCCTGGTCAAGGAGTTCCCATACCGATGCAACGCGCACCCTTAGTTCCCGTATCTGGAGGGCCCTTTATGAAGTCAGCTGTACGACCGAATGGTTGTGGTGCAGGAGGTCCTGTAGAACCAGCTCAAGCTTCTAGTTCAAAGGATTCAGTGCAGAACATGAACTCTCAAGTGATGCAAAACACCAACACCAATAGCTCCATGAATCAGACTTCTAATCAGTGCCAGGCAACAAATGAGGTATTTGGACAGTCTGCATTTGTGCAAAATAATGTTCAAGCGTCGGATGTTAGTGCCAGCGGAGCTAACAGATCTACTAATGGAAAAGACCAAGTGCTTAGTAGACCAGCTAGTGAGTTGATATTGCATTCGCTGTACATTGATTCTTATGTTTGCTGTGCACACAGTAATAATTTATTTTTTGAAAAAATATCAACTTATCTTAACTTGTATATGCAGGTTATGACTAACAAGCAGTTCAAAGTACATGAAAAAGGTACCTCTGAGTCGATGAGGTTGAACCTTTACAATAACTATCTGAATTCTTATTTCAGGAGTACAATCACATATTGCACAGATTTTGGTACCTTGAGAAGACTGAATTCCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

810

Amino Acids

87.89

Weight (kDa)

6.44

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	461 - 508	1.1e-13	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	467 - 510	3.4e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	710, 724
Acc36I	ACCTGC	3 cut(s)	710, 724, 2269
Acc65I	GGTACC	2 cut(s)	2318, 2405
AccB1I	GGYRCC	4 cut(s)	271, 1726, 2318, 2405
AccI	GTMKAC	1 cut(s)	2164
AccII	CGCG	1 cut(s)	1857
AciI	CCGC	3 cut(s)	1035, 1435, 2121
AclWI	GGATC	2 cut(s)	1235, 1708
AcsI	RAATTY	4 cut(s)	227, 697, 2362, 2422
AcuI	CTGAAG	4 cut(s)	992, 1218, 1706, 1793
AcvI	CACGTG	1 cut(s)	1250
AfaI	GTAC	9 cut(s)	1063, 1354, 1533, 1905, 2198, 2307, 2320, 2380, 2407
AfiI	CCNNNNNNNGG	5 cut(s)	722, 1739, 1769, 1832, 1877
AflIII	ACRYGT	1 cut(s)	309
AhlI	ACTAGT	2 cut(s)	569, 920
AjnI	CCWGG	5 cut(s)	730, 1585, 1753, 1825, 2046
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AleI	CACNNNNGTG	1 cut(s)	1635
Alw21I	GWGCWC	3 cut(s)	502, 1747, 2224
Alw44I	GTGCAC	2 cut(s)	1743, 2220
AlwI	GGATC	2 cut(s)	1235, 1708
AlwNI	CAGNNNCTG	2 cut(s)	1169, 1187
Ama87I	CYCGRG	1 cut(s)	865
AoxI	GGCC	2 cut(s)	1497, 1883
ApaI	GGGCCC	1 cut(s)	1887
ApaLI	GTGCAC	2 cut(s)	1743, 2220
ApeKI	GCWGC	5 cut(s)	474, 545, 960, 1082, 1376
ApoI	RAATTY	4 cut(s)	227, 697, 2362, 2422
Asp700I	GAANNNNTTC	2 cut(s)	571, 2426
Asp718I	GGTACC	2 cut(s)	2318, 2405
AspLEI	GCGC	2 cut(s)	1441, 1859
AspS9I	GGNCC	3 cut(s)	1883, 1884, 1931
AsuHPI	GGTGA	2 cut(s)	705, 1752
AsuII	TTCGAA	2 cut(s)	47, 60
AvaI	CYCGRG	1 cut(s)	865
AvaII	GGWCC	1 cut(s)	1931
BaeGI	GKGCMC	4 cut(s)	1159, 1747, 1887, 2224
BanI	GGYRCC	4 cut(s)	271, 1726, 2318, 2405
BanII	GRGCYC	1 cut(s)	1887
BauI	CACGAG	1 cut(s)	1269
BbrPI	CACGTG	1 cut(s)	1250
BbsI	GAAGAC	2 cut(s)	1520, 2422
Bbv12I	GWGCWC	3 cut(s)	502, 1747, 2224
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BccI	CCATC	8 cut(s)	172, 214, 244, 631, 687, 1540, 1669, 1786
BceAI	ACGGC	1 cut(s)	259
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	5 cut(s)	732, 1587, 1755, 1827, 2048
BclI	TGATCA	1 cut(s)	337
BcuI	ACTAGT	2 cut(s)	569, 920
BfmI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
BfoI	RGCGCY	1 cut(s)	1442
BfuAI	ACCTGC	3 cut(s)	710, 724, 2269
BglII	AGATCT	1 cut(s)	2132
BisI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
BlsI	GCNGC	5 cut(s)	476, 547, 962, 1084, 1378
Bme1390I	CCNGG	5 cut(s)	732, 1587, 1755, 1827, 2048
Bme18I	GGWCC	1 cut(s)	1931
BmeT110I	CYCGRG	1 cut(s)	865
BmgT120I	GGNCC	3 cut(s)	1883, 1884, 1931
BmiI	GGNNCC	8 cut(s)	208, 273, 1056, 1360, 1728, 1885, 2320, 2407
BmrFI	CCNGG	5 cut(s)	732, 1587, 1755, 1827, 2048
BmsI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
BpiI	GAAGAC	2 cut(s)	1520, 2422
BplI	GAGNNNNNCTC	4 cut(s)	1085, 1117, 1252, 1284
BpmI	CTGGAG	2 cut(s)	997, 1899
Bpu10I	CCTNAGC	2 cut(s)	549, 1210
Bpu14I	TTCGAA	2 cut(s)	47, 60
BpuEI	CTTGAG	4 cut(s)	1070, 1932, 1974, 2431
BsaAI	YACGTR	2 cut(s)	1061, 1250
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	317, 490
BsaXI	ACNNNNNCTCC	6 cut(s)	1106, 1136, 1509, 1539, 1920, 1950
Bsc4I	CCNNNNNNNGG	5 cut(s)	722, 1739, 1769, 1832, 1877
Bse1I	ACTGG	3 cut(s)	90, 126, 1014
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	5 cut(s)	732, 1587, 1755, 1827, 2048
BseDI	CCNNGG	2 cut(s)	317, 490
BseGI	GGATG	5 cut(s)	259, 1102, 1680, 1797, 2113
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	5 cut(s)	722, 1739, 1769, 1832, 1877
BseMII	CTCAG	5 cut(s)	540, 927, 1068, 1224, 2316
BseNI	ACTGG	3 cut(s)	90, 126, 1014
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	4 cut(s)	1159, 1747, 1887, 2224
BseXI	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BsgI	GTGCAG	3 cut(s)	493, 1944, 1994
Bsh1236I	CGCG	1 cut(s)	1857
Bsh1285I	CGRYCG	2 cut(s)	1348, 1910
BshFI	GGCC	2 cut(s)	1499, 1885
BshNI	GGYRCC	4 cut(s)	271, 1726, 2318, 2405
BsiEI	CGRYCG	2 cut(s)	1348, 1910
BsiHKAI	GWGCWC	3 cut(s)	502, 1747, 2224
BsiHKCI	CYCGRG	1 cut(s)	865
BslI	CCNNNNNNNGG	5 cut(s)	722, 1739, 1769, 1832, 1877
BsmI	GAATGC	3 cut(s)	1295, 1596, 2188
BsnI	GGCC	2 cut(s)	1499, 1885
BsoBI	CYCGRG	1 cut(s)	865
Bsp119I	TTCGAA	2 cut(s)	47, 60
Bsp120I	GGGCCC	1 cut(s)	1883
Bsp1286I	GDGCHC	5 cut(s)	502, 1159, 1747, 1887, 2224
Bsp1407I	TGTACA	1 cut(s)	2196
Bsp143I	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	3 cut(s)	1035, 1435, 2121
BspANI	GGCC	2 cut(s)	1499, 1885
BspCNI	CTCAG	5 cut(s)	541, 928, 1069, 1223, 2317
BspFNI	CGCG	1 cut(s)	1857
BspLI	GGNNCC	8 cut(s)	208, 273, 1056, 1360, 1728, 1885, 2320, 2407
BspMAI	CTGCAG	2 cut(s)	721, 965
BspMI	ACCTGC	3 cut(s)	710, 724, 2269
BspPI	GGATC	2 cut(s)	1235, 1708
BspT104I	TTCGAA	2 cut(s)	47, 60
BspT107I	GGYRCC	4 cut(s)	271, 1726, 2318, 2405
BsrGI	TGTACA	1 cut(s)	2196
BsrI	ACTGG	3 cut(s)	90, 126, 1014
BssECI	CCNNGG	2 cut(s)	317, 490
BssMI	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
BssSI	CACGAG	1 cut(s)	1269
BssT1I	CCWWGG	2 cut(s)	317, 490
Bst2BI	CACGAG	1 cut(s)	1269
Bst2UI	CCWGG	5 cut(s)	732, 1587, 1755, 1827, 2048
Bst4CI	ACNGT	5 cut(s)	990, 1074, 1346, 2073, 2228
Bst6I	CTCTTC	1 cut(s)	1253
BstAPI	GCANNNNNTGC	1 cut(s)	1600
BstAUI	TGTACA	1 cut(s)	2196
BstBAI	YACGTR	2 cut(s)	1061, 1250
BstBI	TTCGAA	2 cut(s)	47, 60
BstC8I	GCNNGC	3 cut(s)	1437, 1605, 2119
BstDEI	CTNAG	9 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864, 2159, 2325
BstDSI	CCRYGG	1 cut(s)	490
BstEII	GGTNACC	1 cut(s)	1709
BstENI	CCTNNNNNAGG	2 cut(s)	1737, 1830
BstF5I	GGATG	5 cut(s)	259, 1102, 1680, 1797, 2113
BstFNI	CGCG	1 cut(s)	1857
BstH2I	RGCGCY	1 cut(s)	1442
BstHHI	GCGC	2 cut(s)	1441, 1859
BstKTI	GATC	5 cut(s)	340, 635, 1243, 1703, 2135
BstMBI	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
BstMCI	CGRYCG	2 cut(s)	1348, 1910
BstMWI	GCNNNNNNNGC	6 cut(s)	716, 824, 1600, 1726, 1735, 2123
BstNI	CCWGG	5 cut(s)	732, 1587, 1755, 1827, 2048
BstNSI	RCATGY	3 cut(s)	313, 1603, 1607
BstPI	GGTNACC	1 cut(s)	1709
BstSCI	CCNGG	5 cut(s)	730, 1585, 1753, 1825, 2046
BstSFI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
BstSLI	GKGCMC	4 cut(s)	1159, 1747, 1887, 2224
BstUI	CGCG	1 cut(s)	1857
BstV1I	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BstV2I	GAAGAC	2 cut(s)	1520, 2422
BstX2I	RGATCY	2 cut(s)	1700, 2132
BstYI	RGATCY	2 cut(s)	1700, 2132
BsuRI	GGCC	2 cut(s)	1499, 1885
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	5 cut(s)	259, 1102, 1680, 1797, 2113
BtsIMutI	CAGTG	5 cut(s)	243, 995, 1021, 1977, 2048
BveI	ACCTGC	3 cut(s)	710, 724, 2269
Cac8I	GCNNGC	3 cut(s)	1437, 1605, 2119
CaiI	CAGNNNCTG	2 cut(s)	1169, 1187
CfoI	GCGC	2 cut(s)	1441, 1859
Cfr13I	GGNCC	3 cut(s)	1883, 1884, 1931
CseI	GACGC	1 cut(s)	2091
Csp6I	GTAC	9 cut(s)	1062, 1353, 1532, 1904, 2197, 2306, 2319, 2379, 2406
CviQI	GTAC	9 cut(s)	1062, 1353, 1532, 1904, 2197, 2306, 2319, 2379, 2406
DdeI	CTNAG	9 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864, 2159, 2325
DpnI	GATC	5 cut(s)	339, 634, 1242, 1702, 2134
DpnII	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
Eam1104I	CTCTTC	1 cut(s)	1253
EarI	CTCTTC	1 cut(s)	1253
Eco130I	CCWWGG	2 cut(s)	317, 490
Eco24I	GRGCYC	1 cut(s)	1887
Eco47I	GGWCC	1 cut(s)	1931
Eco57I	CTGAAG	4 cut(s)	992, 1218, 1706, 1793
Eco72I	CACGTG	1 cut(s)	1250
Eco88I	CYCGRG	1 cut(s)	865
Eco91I	GGTNACC	1 cut(s)	1709
EcoNI	CCTNNNNNAGG	2 cut(s)	1737, 1830
EcoO109I	RGGNCCY	3 cut(s)	1883, 1884, 1931
EcoO65I	GGTNACC	1 cut(s)	1709
EcoRI	GAATTC	3 cut(s)	697, 2362, 2422
EcoRII	CCWGG	5 cut(s)	730, 1585, 1753, 1825, 2046
EcoT14I	CCWWGG	2 cut(s)	317, 490
EcoT22I	ATGCAT	1 cut(s)	1605
EcoT38I	GRGCYC	1 cut(s)	1887
ErhI	CCWWGG	2 cut(s)	317, 490
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FauI	CCCGC	1 cut(s)	1428
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	2164
Fnu4HI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
FokI	GGATG	5 cut(s)	266, 1109, 1687, 1804, 2120
FriOI	GRGCYC	1 cut(s)	1887
Fsp4HI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
GlaI	GCGC	2 cut(s)	1440, 1858
GluI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
GsuI	CTGGAG	2 cut(s)	997, 1899
HaeII	RGCGCY	1 cut(s)	1442
HaeIII	GGCC	2 cut(s)	1499, 1885
HgaI	GACGC	1 cut(s)	2091
HhaI	GCGC	2 cut(s)	1441, 1859
Hin6I	GCGC	2 cut(s)	1439, 1857
HinP1I	GCGC	2 cut(s)	1439, 1857
HincII	GTYRAC	2 cut(s)	661, 981
HindII	GTYRAC	2 cut(s)	661, 981
HindIII	AAGCTT	3 cut(s)	1230, 1479, 1950
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	2 cut(s)	705, 1752
Hpy99I	CGWCG	1 cut(s)	2107
HpyAV	CCTTC	3 cut(s)	967, 1404, 1817
HpyCH4III	ACNGT	5 cut(s)	990, 1074, 1346, 2073, 2228
HpyCH4IV	ACGT	3 cut(s)	857, 1060, 1249
HpyF10VI	GCNNNNNNNGC	6 cut(s)	716, 824, 1600, 1726, 1735, 2123
HpyF3I	CTNAG	9 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864, 2159, 2325
HpySE526I	ACGT	3 cut(s)	857, 1060, 1249
HspAI	GCGC	2 cut(s)	1439, 1857
KpnI	GGTACC	2 cut(s)	2322, 2409
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
LmnI	GCTCC	5 cut(s)	13, 1550, 1799, 2024, 2123
Lsp1109I	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
LweI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
MaeII	ACGT	3 cut(s)	857, 1060, 1249
MaeIII	GTNAC	3 cut(s)	296, 1578, 1709
MalI	GATC	5 cut(s)	339, 634, 1242, 1702, 2134
MboI	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
MflI	RGATCY	2 cut(s)	1700, 2132
MhlI	GDGCHC	5 cut(s)	502, 1159, 1747, 1887, 2224
MlyI	GAGTC	6 cut(s)	151, 236, 947, 986, 1277, 2336
MmeI	TCCRAC	3 cut(s)	170, 1621, 2085
Mph1103I	ATGCAT	1 cut(s)	1605
MroXI	GAANNNNTTC	2 cut(s)	571, 2426
MseI	TTAA	3 cut(s)	153, 660, 2265
MslI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
MspA1I	CMGCKG	2 cut(s)	1901, 2121
MspR9I	CCNGG	5 cut(s)	732, 1587, 1755, 1827, 2048
Mva1269I	GAATGC	3 cut(s)	1295, 1596, 2188
MvaI	CCWGG	5 cut(s)	732, 1587, 1755, 1827, 2048
MvnI	CGCG	1 cut(s)	1857
MwoI	GCNNNNNNNGC	6 cut(s)	716, 824, 1600, 1726, 1735, 2123
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
NlaIV	GGNNCC	8 cut(s)	208, 273, 1056, 1360, 1728, 1885, 2320, 2407
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	1605
NspI	RCATGY	3 cut(s)	313, 1603, 1607
NspV	TTCGAA	2 cut(s)	47, 60
OliI	CACNNNNGTG	1 cut(s)	1635
PaeI	GCATGC	1 cut(s)	1607
PaeR7I	CTCGAG	1 cut(s)	865
PaqCI	CACCTGC	2 cut(s)	710, 724
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	432, 863
PctI	GAATGC	3 cut(s)	1295, 1596, 2188
PdmI	GAANNNNTTC	2 cut(s)	571, 2426
PfeI	GAWTC	9 cut(s)	44, 49, 181, 953, 1316, 1419, 1967, 2026, 2204
PkrI	GCNGC	5 cut(s)	476, 547, 962, 1084, 1378
PleI	GAGTC	6 cut(s)	150, 236, 946, 985, 1277, 2335
PmaCI	CACGTG	1 cut(s)	1250
PmlI	CACGTG	1 cut(s)	1250
PpsI	GAGTC	6 cut(s)	150, 236, 946, 985, 1277, 2335
Ppu21I	YACGTR	2 cut(s)	1061, 1250
PpuMI	RGGWCCY	1 cut(s)	1931
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	1931
Psp6I	CCWGG	5 cut(s)	730, 1585, 1753, 1825, 2046
PspCI	CACGTG	1 cut(s)	1250
PspEI	GGTNACC	1 cut(s)	1709
PspGI	CCWGG	5 cut(s)	730, 1585, 1753, 1825, 2046
PspN4I	GGNNCC	8 cut(s)	208, 273, 1056, 1360, 1728, 1885, 2320, 2407
PspOMI	GGGCCC	1 cut(s)	1883
PspPI	GGNCC	3 cut(s)	1883, 1884, 1931
PspPPI	RGGWCCY	1 cut(s)	1931
PspXI	VCTCGAGB	1 cut(s)	865
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
PstI	CTGCAG	2 cut(s)	721, 965
PstNI	CAGNNNCTG	2 cut(s)	1169, 1187
PsuI	RGATCY	2 cut(s)	1700, 2132
PvuII	CAGCTG	1 cut(s)	1901
RsaI	GTAC	9 cut(s)	1063, 1354, 1533, 1905, 2198, 2307, 2320, 2380, 2407
RsaNI	GTAC	9 cut(s)	1062, 1353, 1532, 1904, 2197, 2306, 2319, 2379, 2406
RseI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
SaqAI	TTAA	3 cut(s)	153, 660, 2265
SatI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
Sau3AI	GATC	5 cut(s)	337, 632, 1240, 1700, 2132
Sau96I	GGNCC	3 cut(s)	1883, 1884, 1931
SbfI	CCTGCAGG	1 cut(s)	721
SchI	GAGTC	6 cut(s)	151, 236, 947, 986, 1277, 2336
ScrFI	CCNGG	5 cut(s)	732, 1587, 1755, 1827, 2048
SdaI	CCTGCAGG	1 cut(s)	721
SduI	GDGCHC	5 cut(s)	502, 1159, 1747, 1887, 2224
SfaNI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
SfcI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
Sfr274I	CTCGAG	1 cut(s)	865
SfuI	TTCGAA	2 cut(s)	47, 60
SinI	GGWCC	1 cut(s)	1931
SlaI	CTCGAG	1 cut(s)	865
SmiMI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
SmlI	CTYRAG	5 cut(s)	865, 1049, 1947, 1989, 2410
SmoI	CTYRAG	5 cut(s)	865, 1049, 1947, 1989, 2410
SpeI	ACTAGT	2 cut(s)	569, 920
SphI	GCATGC	1 cut(s)	1607
Sse8387I	CCTGCAGG	1 cut(s)	721
SsiI	CCGC	3 cut(s)	1035, 1435, 2121
StyD4I	CCNGG	5 cut(s)	730, 1585, 1753, 1825, 2046
StyI	CCWWGG	2 cut(s)	317, 490
TaaI	ACNGT	5 cut(s)	990, 1074, 1346, 2073, 2228
TaiI	ACGT	3 cut(s)	860, 1063, 1252
TaqII	GACCGA	1 cut(s)	1924
TatI	WGTACW	4 cut(s)	1531, 2196, 2305, 2378
TfiI	GAWTC	9 cut(s)	44, 49, 181, 953, 1316, 1419, 1967, 2026, 2204
Tru1I	TTAA	3 cut(s)	153, 660, 2265
Tru9I	TTAA	3 cut(s)	153, 660, 2265
TscAI	CASTG	5 cut(s)	243, 995, 1021, 1977, 2048
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	5 cut(s)	474, 545, 960, 1082, 1376
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	9 cut(s)	270, 369, 1040, 1440, 1706, 1907, 1997, 2039, 2325
TspRI	CASTG	5 cut(s)	243, 995, 1021, 1977, 2048
VneI	GTGCAC	2 cut(s)	1743, 2220
VpaK11BI	GGWCC	1 cut(s)	1931
XagI	CCTNNNNNAGG	2 cut(s)	1737, 1830
XapI	RAATTY	4 cut(s)	227, 697, 2362, 2422
XceI	RCATGY	3 cut(s)	313, 1603, 1607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	2164
XmnI	GAANNNNTTC	2 cut(s)	571, 2426
Zsp2I	ATGCAT	1 cut(s)	1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.