Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8042810.1

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8042810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 391 bp

cttcaatgcttgatgaggccattgagtatttgaagacacttcaactccaagtacagattatgtcgatgggagctggtttgtatatgccacaaatgatgttaccaccaggaatgcaacacatgcatgcaccccgtatggctcatttctcgcacatgggtgttggaatgggaatgggattgggcatgggttttgggatgggtatgcctgacatgaatggtggatcttctggttaccctatgcttcaggtgcctcctatgcaaggtgcacattttcctggttcaccaatgtcagggcatactgcgttcaatgggatggtaggagctaaccttcagatgtttgggcttcctggtcaaggagttcccataccgatgcaacgcgcacccttagttcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

130

Amino Acids

13.78

Weight (kDa)

6.55

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	377
AclWI	GGATC	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	226, 313
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	259, 289, 352
AgsI	TTSAA	4 cut(s)	5, 33, 43, 306
AjnI	CCWGG	3 cut(s)	105, 273, 345
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	73, 322
AluI	AGCT	2 cut(s)	73, 322
Alw21I	GWGCWC	1 cut(s)	267
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	3 cut(s)	60, 189, 306
BciT130I	CCWGG	3 cut(s)	107, 275, 347
Bme1390I	CCNGG	3 cut(s)	107, 275, 347
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	3 cut(s)	107, 275, 347
BmsI	GCATC	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	29, 59
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 289, 352
BseBI	CCWGG	3 cut(s)	107, 275, 347
BseGI	GGATG	2 cut(s)	200, 317
BseLI	CCNNNNNNNGG	3 cut(s)	259, 289, 352
BseSI	GKGCMC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	19
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	259, 289, 352
BsmI	GAATGC	1 cut(s)	116
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	246
BssMI	GATC	1 cut(s)	220
Bst2UI	CCWGG	3 cut(s)	107, 275, 347
BstAPI	GCANNNNNTGC	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	229
BstENI	CCTNNNNNAGG	2 cut(s)	257, 350
BstF5I	GGATG	2 cut(s)	200, 317
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 246, 255
BstNI	CCWGG	3 cut(s)	107, 275, 347
BstNSI	RCATGY	2 cut(s)	123, 127
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	105, 273, 345
BstSLI	GKGCMC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	377
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	200, 317
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	5 cut(s)	120, 124, 153, 183, 210
CviJI	RGCY	5 cut(s)	19, 73, 139, 322, 342
CviKI_1	RGCY	5 cut(s)	19, 73, 139, 322, 342
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	226, 313
Eco91I	GGTNACC	1 cut(s)	229
EcoNI	CCTNNNNNAGG	2 cut(s)	257, 350
EcoO65I	GGTNACC	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	105, 273, 345
EcoT22I	ATGCAT	1 cut(s)	125
FaeI	CATG	5 cut(s)	123, 127, 156, 186, 213
FatI	CATG	5 cut(s)	119, 123, 152, 182, 209
FokI	GGATG	2 cut(s)	207, 324
GlaI	GCGC	1 cut(s)	378
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	5 cut(s)	123, 127, 156, 186, 213
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	2 cut(s)	265, 280
Hpy188I	TCNGA	1 cut(s)	332
Hpy8I	GTNNAC	2 cut(s)	265, 280
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	6 cut(s)	114, 123, 127, 258, 265, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 246, 255
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	5 cut(s)	123, 127, 156, 186, 213
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	70, 319
LweI	GCATC	1 cut(s)	359
MaeIII	GTNAC	2 cut(s)	98, 229
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	2 cut(s)	45, 215
MflI	RGATCY	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	9, 260
Mph1103I	ATGCAT	1 cut(s)	125
MslI	CAYNNNNRTG	3 cut(s)	122, 155, 367
MspR9I	CCNGG	3 cut(s)	107, 275, 347
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	3 cut(s)	107, 275, 347
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	120, 246, 255
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	123, 127, 156, 186, 213
NlaIV	GGNNCC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	125
NspI	RCATGY	2 cut(s)	123, 127
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	116
Psp6I	CCWGG	3 cut(s)	105, 273, 345
PspEI	GGTNACC	1 cut(s)	229
PspGI	CCWGG	3 cut(s)	105, 273, 345
PspN4I	GGNNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	3 cut(s)	122, 155, 367
Sau3AI	GATC	1 cut(s)	220
ScrFI	CCNGG	3 cut(s)	107, 275, 347
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	5 cut(s)	75, 248, 264, 324, 329
SfaNI	GCATC	1 cut(s)	359
SmiMI	CAYNNNNRTG	3 cut(s)	122, 155, 367
SphI	GCATGC	1 cut(s)	127
StyD4I	CCNGG	3 cut(s)	105, 273, 345
TaqI	TCGA	1 cut(s)	64
TatI	WGTACW	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	263
XagI	CCTNNNNNAGG	2 cut(s)	257, 350
XceI	RCATGY	2 cut(s)	123, 127
Zsp2I	ATGCAT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.