Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

42057221 .. 42062707

Gene Structure 5487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2202 bp

ATGCCTTTATCGGAGCTATATCGAATGGCCAGAGGGAGGAGTGATTCGAATCCGGATTTCGAACCTGTGAATGATTTTGTTGAACTGGTATGGGAAAATGGGCAGATTATGATGCAAGGTCAAGCCAGTAGAGCTAAAAAGAGTCCAACTTTTAACAGCTTACCATCTCACACCCCCAAGAATCGAGATAGAGATTTAGGAAATGGAACCAATGGGAAGATGGGGAAATTTGGGTCAGTGGACTCTGTGATGGATGAAATTCCATTGTCGGTGCCATCTGTTGAAATGGGTTTGAGTGACGATGATGACATGTTGCCTTGGTTGAATTATGCCCTTGATCAACCTTTACAACATGAATATAGCCATGATTTTATGCCTGAAATATCTGGTGTCAATGCAAATGAGATTTCCACCAATGGCAATCTCGCATCAATCGAGAAAAGGAGTAGTTCTAGTCAGATATATAGGGAGTCCAGCCCCAATTCTACCCATGAAGGTGCTCTTTTGGAACAAAGGAATGTATCAAAGCTTTCTTCAATAAGTGCTGCTGAGGTTAGCAGACCTAGAACTAGTACTACTCACTTATACCAGATGTCATCACAGCAATCCCAAGCATCAATTCCATCTTTTAGATCAATCGCTTCGGATATGGTTGCTGTTAACACAAGTAGTGCCGACCATCATGCTGTTTGCAAGAATTCAATTCAGGCTTCACCTGCAGGTGGTTTTCCTGGCATAACAACGCAGAAGCAAAATCCACCAACTCCTAGTAATAATAATTCAACCATAGTGAACTTTTCCCATTTCTCACGACCAGCTACTCTTGCAAAAGCCAATCTTCACAATAATGGTGCAATGTCCAGCTCAAGTTTAGTAAGGGTGGAAAAGATTGGAAATAAGGATAAGGTTTCAGTTGCAACTTGTAGCAATCCTCCTGAGTCGATACTAATCGAATCAAGCTGCAGTTTACTGAAGGAGTCAACTTCACAGTGCCAAGATGTTATGGCGCCCTCCAGTGTTGATATGAAACCAACCGCATCTAAGCCTCTTGAGGAACCATGTACTACTAAACAGTCTGAGGCTGCATATCAAGAGGATGCCTCTAAGAATGATGACACAAACTCCAATCATATTCCTTGTGAAAGCGCAATTAGGGCACTTCCAGATGCTGAAAAAACTACAGAGCCTGTGGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGACAAAGCTTCAGATGATCCAGCTCGTGCGTTGAAGAGAAAATCTCGTGATACTGATGACTCTGAATGCCATAGTGAAGATGTAGAGGAAGAATCTGTGGGCGTGAAAAAGGTAGCTCACGGTCGAGGTACAGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAACTTATCAGAAAGGAGGCGAAGGGATAGAATCAATGAAAAGATGCGGGCGCTTCAAGAACTCATACCTAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATTTGAAGACACTTCAACTCCAAGTACAGATTATGTCGATGGGAGCTGGTTTGTATATGCCACAAATGATGTTACCACCAGGAATGCAACACATGCATGCACCCCGTATGGCTCATTTCTCGCACATGGGTGTTGGAATGGGAATGGGAATGGGAATGGGAATGGGATTGGGCATGGGTTTTGAGATGGGTATGCCTGACATGAATGGTGGATCTTCTGGTTACCCTATGCTTCAGGTGCCTCCTATGCAAGGTGCACATTTTCCTGGTTCACCAATGTCAGGGCATACTGCGTTCAATGGGATGGTAGGATCTAACCTTCAGATGTTTGGGCTTCCGGGTCAAGGAGTTCCCATACCAATGCAACGCGCACCCTTAGTTCCCGTATCTGGAGGGCCCTTTATGAAGTCAGCTGTACGACCAAATGGTTGTGGTGGAGGAGGTCCTGTAGAACCAGCTCAAGCTTCTAGTTCAAAGGATTCAGTGCAGAACATGAACTCTCAAGTGATGCAAAACACCAACACCAATAGCTCCATGAATCAGACTTCTAATCAGTGCCAGGCAACAAATGAGGTATTTGGACAGTCTGCATTTGTGCAAAATAATATTCAAGCGTCGGATGTTAGTACCAGCGGAGCTAACAGATCTACTAATGGAAAAGACCATGTGCTTAGTAGACCAGCTAGTTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

733

Amino Acids

78.72

Weight (kDa)

5.95

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	461 - 508	9.7e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	467 - 510	3e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	710, 724
Acc36I	ACCTGC	2 cut(s)	710, 724
AccB1I	GGYRCC	3 cut(s)	271, 1006, 1744
AccI	GTMKAC	1 cut(s)	2182
AccII	CGCG	1 cut(s)	1875
AccIII	TCCGGA	1 cut(s)	52
AciI	CCGC	3 cut(s)	1035, 1435, 2139
AclWI	GGATC	3 cut(s)	1235, 1726, 1825
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	3 cut(s)	227, 258, 697
AcuI	CTGAAG	4 cut(s)	992, 1218, 1724, 1811
AcyI	GRCGYC	1 cut(s)	1007
AfaI	GTAC	6 cut(s)	574, 1063, 1354, 1533, 1923, 2134
AfiI	CCNNNNNNNGG	6 cut(s)	36, 722, 1757, 1787, 1850, 1895
AflIII	ACRYGT	1 cut(s)	309
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	4 cut(s)	730, 1585, 1771, 2064
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AleI	CACNNNNGTG	1 cut(s)	1635
Alw21I	GWGCWC	2 cut(s)	502, 1765
Alw44I	GTGCAC	1 cut(s)	1761
AlwI	GGATC	3 cut(s)	1235, 1726, 1825
AlwNI	CAGNNNCTG	2 cut(s)	1169, 1187
Aor13HI	TCCGGA	1 cut(s)	52
AoxI	GGCC	3 cut(s)	27, 1497, 1901
ApaI	GGGCCC	1 cut(s)	1905
ApaLI	GTGCAC	1 cut(s)	1761
ApeKI	GCWGC	4 cut(s)	545, 960, 1082, 1376
ApoI	RAATTY	3 cut(s)	227, 258, 697
AspLEI	GCGC	4 cut(s)	1009, 1148, 1441, 1877
AspS9I	GGNCC	3 cut(s)	1901, 1902, 1949
AsuC2I	CCSGG	1 cut(s)	1845
AsuHPI	GGTGA	2 cut(s)	705, 1770
AsuII	TTCGAA	2 cut(s)	47, 60
AvaII	GGWCC	1 cut(s)	1949
BaeGI	GKGCMC	3 cut(s)	1159, 1765, 1905
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	3 cut(s)	271, 1006, 1744
BanII	GRGCYC	1 cut(s)	1905
BauI	CACGAG	2 cut(s)	1248, 1269
BbsI	GAAGAC	1 cut(s)	1520
Bbv12I	GWGCWC	2 cut(s)	502, 1765
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	532, 947, 1069, 1388
BccI	CCATC	9 cut(s)	172, 214, 244, 283, 631, 687, 1540, 1687, 1804
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	4 cut(s)	732, 1587, 1773, 2066
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	1845
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	6 cut(s)	453, 564, 570, 768, 1974, 2190
BfmI	CTRYAG	4 cut(s)	717, 961, 1179, 1953
BfoI	RGCGCY	2 cut(s)	1010, 1442
BfuAI	ACCTGC	2 cut(s)	710, 724
BglII	AGATCT	1 cut(s)	2150
BisI	GCNGC	4 cut(s)	546, 961, 1083, 1377
BlsI	GCNGC	4 cut(s)	547, 962, 1084, 1378
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	5 cut(s)	732, 1587, 1773, 1845, 2066
Bme18I	GGWCC	1 cut(s)	1949
BmgT120I	GGNCC	3 cut(s)	1901, 1902, 1949
BmiI	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1746, 1903
BmrFI	CCNGG	5 cut(s)	732, 1587, 1773, 1845, 2066
BmsI	GCATC	8 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 2004
BpiI	GAAGAC	1 cut(s)	1520
BplI	GAGNNNNNCTC	4 cut(s)	1085, 1117, 1252, 1284
BpmI	CTGGAG	2 cut(s)	997, 1917
Bpu10I	CCTNAGC	2 cut(s)	549, 1210
Bpu14I	TTCGAA	2 cut(s)	47, 60
BpuEI	CTTGAG	4 cut(s)	850, 1070, 1950, 1992
BpuMI	CCSGG	1 cut(s)	1845
BsaBI	GATNNNNATC	2 cut(s)	48, 947
BsaHI	GRCGYC	1 cut(s)	1007
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	6 cut(s)	1106, 1136, 1509, 1539, 1938, 1968
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 722, 1757, 1787, 1850, 1895
Bse1I	ACTGG	3 cut(s)	90, 126, 1014
Bse3DI	GCAATG	1 cut(s)	861
Bse8I	GATNNNNATC	2 cut(s)	48, 947
BseAI	TCCGGA	1 cut(s)	52
BseBI	CCWGG	4 cut(s)	732, 1587, 1773, 2066
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	4 cut(s)	259, 1102, 1815, 2131
BseJI	GATNNNNATC	2 cut(s)	48, 947
BseLI	CCNNNNNNNGG	6 cut(s)	36, 722, 1757, 1787, 1850, 1895
BseMI	GCAATG	1 cut(s)	861
BseMII	CTCAG	4 cut(s)	540, 927, 1068, 1224
BseNI	ACTGG	3 cut(s)	90, 126, 1014
BseRI	GAGGAG	2 cut(s)	52, 1959
BseSI	GKGCMC	3 cut(s)	1159, 1765, 1905
BseXI	GCAGC	4 cut(s)	532, 947, 1069, 1388
BsgI	GTGCAG	1 cut(s)	2012
Bsh1236I	CGCG	1 cut(s)	1875
Bsh1285I	CGRYCG	1 cut(s)	1348
BshFI	GGCC	3 cut(s)	29, 1499, 1903
BshNI	GGYRCC	3 cut(s)	271, 1006, 1744
BsiEI	CGRYCG	1 cut(s)	1348
BsiHKAI	GWGCWC	2 cut(s)	502, 1765
BsiSI	CCGG	2 cut(s)	53, 1844
BslI	CCNNNNNNNGG	6 cut(s)	36, 722, 1757, 1787, 1850, 1895
BsmI	GAATGC	2 cut(s)	1295, 1596
BsnI	GGCC	3 cut(s)	29, 1499, 1903
Bsp119I	TTCGAA	2 cut(s)	47, 60
Bsp120I	GGGCCC	1 cut(s)	1901
Bsp1286I	GDGCHC	4 cut(s)	502, 1159, 1765, 1905
Bsp13I	TCCGGA	1 cut(s)	52
Bsp143I	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
BspACI	CCGC	3 cut(s)	1035, 1435, 2139
BspANI	GGCC	3 cut(s)	29, 1499, 1903
BspCNI	CTCAG	4 cut(s)	541, 928, 1069, 1223
BspEI	TCCGGA	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	1875
BspLI	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1746, 1903
BspMAI	CTGCAG	2 cut(s)	721, 965
BspMI	ACCTGC	2 cut(s)	710, 724
BspPI	GGATC	3 cut(s)	1235, 1726, 1825
BspT104I	TTCGAA	2 cut(s)	47, 60
BspT107I	GGYRCC	3 cut(s)	271, 1006, 1744
BsrDI	GCAATG	1 cut(s)	861
BsrI	ACTGG	3 cut(s)	90, 126, 1014
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
BssNI	GRCGYC	1 cut(s)	1007
BssSI	CACGAG	2 cut(s)	1248, 1269
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	2 cut(s)	1248, 1269
Bst2UI	CCWGG	4 cut(s)	732, 1587, 1773, 2066
Bst4CI	ACNGT	4 cut(s)	990, 1074, 1346, 2091
Bst6I	CTCTTC	1 cut(s)	1253
BstACI	GRCGYC	1 cut(s)	1007
BstAPI	GCANNNNNTGC	1 cut(s)	1600
BstBI	TTCGAA	2 cut(s)	47, 60
BstC8I	GCNNGC	2 cut(s)	1437, 1605
BstDEI	CTNAG	8 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1882, 2177
BstEII	GGTNACC	1 cut(s)	1727
BstENI	CCTNNNNNAGG	1 cut(s)	1755
BstF5I	GGATG	4 cut(s)	259, 1102, 1815, 2131
BstFNI	CGCG	1 cut(s)	1875
BstH2I	RGCGCY	2 cut(s)	1010, 1442
BstHHI	GCGC	4 cut(s)	1009, 1148, 1441, 1877
BstKTI	GATC	6 cut(s)	340, 635, 1243, 1721, 1820, 2153
BstMBI	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
BstMCI	CGRYCG	1 cut(s)	1348
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 716, 824, 1154, 1600, 1744, 1753
BstNI	CCWGG	4 cut(s)	732, 1587, 1773, 2066
BstNSI	RCATGY	3 cut(s)	313, 1603, 1607
BstPI	GGTNACC	1 cut(s)	1727
BstSCI	CCNGG	5 cut(s)	730, 1585, 1771, 1843, 2064
BstSFI	CTRYAG	4 cut(s)	717, 961, 1179, 1953
BstSLI	GKGCMC	3 cut(s)	1159, 1765, 1905
BstUI	CGCG	1 cut(s)	1875
BstV1I	GCAGC	4 cut(s)	532, 947, 1069, 1388
BstV2I	GAAGAC	1 cut(s)	1520
BstX2I	RGATCY	3 cut(s)	1718, 1817, 2150
BstYI	RGATCY	3 cut(s)	1718, 1817, 2150
BsuRI	GGCC	3 cut(s)	29, 1499, 1903
BtsCI	GGATG	4 cut(s)	259, 1102, 1815, 2131
BtsIMutI	CAGTG	5 cut(s)	243, 995, 1021, 1995, 2066
BveI	ACCTGC	2 cut(s)	710, 724
Cac8I	GCNNGC	2 cut(s)	1437, 1605
CaiI	CAGNNNCTG	2 cut(s)	1169, 1187
CfoI	GCGC	4 cut(s)	1009, 1148, 1441, 1877
Cfr13I	GGNCC	3 cut(s)	1901, 1902, 1949
CseI	GACGC	1 cut(s)	2109
Csp6I	GTAC	6 cut(s)	573, 1062, 1353, 1532, 1922, 2133
CviQI	GTAC	6 cut(s)	573, 1062, 1353, 1532, 1922, 2133
DdeI	CTNAG	8 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1882, 2177
DinI	GGCGCC	1 cut(s)	1008
DpnI	GATC	6 cut(s)	339, 634, 1242, 1720, 1819, 2152
DpnII	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	1253
EarI	CTCTTC	1 cut(s)	1253
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	1905
Eco47I	GGWCC	1 cut(s)	1949
Eco57I	CTGAAG	4 cut(s)	992, 1218, 1724, 1811
Eco91I	GGTNACC	1 cut(s)	1727
EcoNI	CCTNNNNNAGG	1 cut(s)	1755
EcoO109I	RGGNCCY	3 cut(s)	1901, 1902, 1949
EcoO65I	GGTNACC	1 cut(s)	1727
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	4 cut(s)	730, 1585, 1771, 2064
EcoT14I	CCWWGG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	1605
EcoT38I	GRGCYC	1 cut(s)	1905
EgeI	GGCGCC	1 cut(s)	1008
EheI	GGCGCC	1 cut(s)	1008
ErhI	CCWWGG	1 cut(s)	317
FalI	AAGNNNNNCTT	4 cut(s)	486, 518, 822, 854
FauI	CCCGC	1 cut(s)	1428
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	2182
Fnu4HI	GCNGC	4 cut(s)	546, 961, 1083, 1377
FokI	GGATG	4 cut(s)	266, 1109, 1822, 2138
FriOI	GRGCYC	1 cut(s)	1905
Fsp4HI	GCNGC	4 cut(s)	546, 961, 1083, 1377
FspBI	CTAG	6 cut(s)	453, 564, 570, 768, 1974, 2190
GlaI	GCGC	4 cut(s)	1008, 1147, 1440, 1876
GluI	GCNGC	4 cut(s)	546, 961, 1083, 1377
GsuI	CTGGAG	2 cut(s)	997, 1917
HaeII	RGCGCY	2 cut(s)	1010, 1442
HaeIII	GGCC	3 cut(s)	29, 1499, 1903
HapII	CCGG	2 cut(s)	53, 1844
HgaI	GACGC	1 cut(s)	2109
HhaI	GCGC	4 cut(s)	1009, 1148, 1441, 1877
Hin1I	GRCGYC	1 cut(s)	1007
Hin6I	GCGC	4 cut(s)	1007, 1146, 1439, 1875
HinP1I	GCGC	4 cut(s)	1007, 1146, 1439, 1875
HincII	GTYRAC	2 cut(s)	661, 981
HindII	GTYRAC	2 cut(s)	661, 981
HindIII	AAGCTT	4 cut(s)	527, 1230, 1479, 1968
HpaI	GTTAAC	1 cut(s)	661
HpaII	CCGG	2 cut(s)	53, 1844
HphI	GGTGA	2 cut(s)	705, 1770
Hpy99I	CGWCG	1 cut(s)	2125
HpyAV	CCTTC	4 cut(s)	488, 967, 1404, 1835
HpyCH4III	ACNGT	4 cut(s)	990, 1074, 1346, 2091
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 716, 824, 1154, 1600, 1744, 1753
HpyF3I	CTNAG	8 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1882, 2177
Hsp92I	GRCGYC	1 cut(s)	1007
HspAI	GCGC	4 cut(s)	1007, 1146, 1439, 1875
KasI	GGCGCC	1 cut(s)	1006
Kpn2I	TCCGGA	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
LmnI	GCTCC	4 cut(s)	13, 1550, 2042, 2141
Lsp1109I	GCAGC	4 cut(s)	532, 947, 1069, 1388
LweI	GCATC	8 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 2004
MaeI	CTAG	6 cut(s)	453, 564, 570, 768, 1974, 2190
MaeIII	GTNAC	3 cut(s)	296, 1578, 1727
MalI	GATC	6 cut(s)	339, 634, 1242, 1720, 1819, 2152
MboI	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
MboII	GAAGA	9 cut(s)	229, 525, 830, 1191, 1270, 1313, 1325, 1525, 1713
MflI	RGATCY	3 cut(s)	1718, 1817, 2150
MhlI	GDGCHC	4 cut(s)	502, 1159, 1765, 1905
MlsI	TGGCCA	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	29
Mly113I	GGCGCC	1 cut(s)	1007
MlyI	GAGTC	6 cut(s)	151, 236, 479, 947, 986, 1277
MmeI	TCCRAC	3 cut(s)	170, 1621, 2103
Mox20I	TGGCCA	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	1605
MroI	TCCGGA	1 cut(s)	52
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	153, 660
MslI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1865
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	1919, 2139
MspI	CCGG	2 cut(s)	53, 1844
MspR9I	CCNGG	5 cut(s)	732, 1587, 1773, 1845, 2066
Mva1269I	GAATGC	2 cut(s)	1295, 1596
MvaI	CCWGG	4 cut(s)	732, 1587, 1773, 2066
MvnI	CGCG	1 cut(s)	1875
MwoI	GCNNNNNNNGC	7 cut(s)	131, 716, 824, 1154, 1600, 1744, 1753
NarI	GGCGCC	1 cut(s)	1007
NciI	CCSGG	1 cut(s)	1845
NdeII	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
NlaIV	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1746, 1903
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	1605
NspI	RCATGY	3 cut(s)	313, 1603, 1607
NspV	TTCGAA	2 cut(s)	47, 60
OliI	CACNNNNGTG	1 cut(s)	1635
PaeI	GCATGC	1 cut(s)	1607
PaqCI	CACCTGC	2 cut(s)	710, 724
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PctI	GAATGC	2 cut(s)	1295, 1596
PfeI	GAWTC	8 cut(s)	44, 49, 181, 953, 1316, 1419, 1985, 2044
PkrI	GCNGC	4 cut(s)	547, 962, 1084, 1378
PleI	GAGTC	6 cut(s)	150, 236, 478, 946, 985, 1277
PluTI	GGCGCC	1 cut(s)	1010
PpsI	GAGTC	6 cut(s)	150, 236, 478, 946, 985, 1277
PpuMI	RGGWCCY	1 cut(s)	1949
PscI	ACATGT	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	1949
Psp6I	CCWGG	4 cut(s)	730, 1585, 1771, 2064
PspEI	GGTNACC	1 cut(s)	1727
PspGI	CCWGG	4 cut(s)	730, 1585, 1771, 2064
PspN4I	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1746, 1903
PspOMI	GGGCCC	1 cut(s)	1901
PspPI	GGNCC	3 cut(s)	1901, 1902, 1949
PspPPI	RGGWCCY	1 cut(s)	1949
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
PstI	CTGCAG	2 cut(s)	721, 965
PstNI	CAGNNNCTG	2 cut(s)	1169, 1187
PsuI	RGATCY	3 cut(s)	1718, 1817, 2150
PvuII	CAGCTG	1 cut(s)	1919
RsaI	GTAC	6 cut(s)	574, 1063, 1354, 1533, 1923, 2134
RsaNI	GTAC	6 cut(s)	573, 1062, 1353, 1532, 1922, 2133
RseI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1865
SaqAI	TTAA	2 cut(s)	153, 660
SatI	GCNGC	4 cut(s)	546, 961, 1083, 1377
Sau3AI	GATC	6 cut(s)	337, 632, 1240, 1718, 1817, 2150
Sau96I	GGNCC	3 cut(s)	1901, 1902, 1949
SbfI	CCTGCAGG	1 cut(s)	721
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	6 cut(s)	151, 236, 479, 947, 986, 1277
ScrFI	CCNGG	5 cut(s)	732, 1587, 1773, 1845, 2066
SdaI	CCTGCAGG	1 cut(s)	721
SduI	GDGCHC	4 cut(s)	502, 1159, 1765, 1905
SfaNI	GCATC	8 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 2004
SfcI	CTRYAG	4 cut(s)	717, 961, 1179, 1953
SfoI	GGCGCC	1 cut(s)	1008
SfuI	TTCGAA	2 cut(s)	47, 60
SinI	GGWCC	1 cut(s)	1949
SmiMI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1865
SmlI	CTYRAG	4 cut(s)	865, 1049, 1965, 2007
SmoI	CTYRAG	4 cut(s)	865, 1049, 1965, 2007
SpeI	ACTAGT	1 cut(s)	569
SphI	GCATGC	1 cut(s)	1607
Sse8387I	CCTGCAGG	1 cut(s)	721
SsiI	CCGC	3 cut(s)	1035, 1435, 2139
SspDI	GGCGCC	1 cut(s)	1006
SspI	AATATT	1 cut(s)	2113
SspMI	CTAG	6 cut(s)	453, 564, 570, 768, 1974, 2190
StyD4I	CCNGG	5 cut(s)	730, 1585, 1771, 1843, 2064
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	4 cut(s)	990, 1074, 1346, 2091
TaqI	TCGA	9 cut(s)	22, 47, 60, 184, 435, 941, 951, 1348, 1544
TatI	WGTACW	3 cut(s)	572, 1061, 1531
TfiI	GAWTC	8 cut(s)	44, 49, 181, 953, 1316, 1419, 1985, 2044
Tru1I	TTAA	2 cut(s)	153, 660
Tru9I	TTAA	2 cut(s)	153, 660
TscAI	CASTG	5 cut(s)	243, 995, 1021, 1995, 2066
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	4 cut(s)	545, 960, 1082, 1376
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	9 cut(s)	270, 369, 507, 1040, 1440, 1724, 1925, 2015, 2057
TspRI	CASTG	5 cut(s)	243, 995, 1021, 1995, 2066
VneI	GTGCAC	1 cut(s)	1761
VpaK11BI	GGWCC	1 cut(s)	1949
XagI	CCTNNNNNAGG	1 cut(s)	1755
XapI	RAATTY	3 cut(s)	227, 258, 697
XceI	RCATGY	3 cut(s)	313, 1603, 1607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	2182
XspI	CTAG	6 cut(s)	453, 564, 570, 768, 1974, 2190
ZrmI	AGTACT	1 cut(s)	574
Zsp2I	ATGCAT	1 cut(s)	1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.