Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

27983931 .. 27986320

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1199000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGCCTTTGTCCGAGCTTTATCGGATGGCCGGAAGGGTTGATTCAAATCAAGATTTTGAAAATGATTTTCTTGAGTTGGTATGGGAAAATGGTCAGGTTATGATGCAGGGTCAGTCCAGTAGAACTAGGAAGAATCCGTCTTTTAATAGCTTACCGTCTTTTAACAACCCAAAAAATCGAGATAGAGATGTAGGAAATGGCAACATTGGGAAGACAGGAAAATTTGGGTCTGTGTTGGATTCTGGATTGGATGAAATTCCGTTGTCAGTGCCATCTTCTGAGATGGGTTTGAGTGAGGATGATGACATGTTGCCTTGGTTGAATTATTCCATTGATGAGCCTTTACATCATGAGTACTGCCATGATTTTTTGCCTGAATTTTCTAGTGCAACTGCAAATGAGGCTTCCACCAATCACAATCTTGCCTCGATCGATAAGAGGAGTAGTTCTAGTCAGGTGTTTAGGGATTCCAATTCCAATTCTGCACATGAAGGTGCTTGTTTGCAACAAAGGAATGTGGGAAAGGTTCCTTTGAATGGTGGTGCTGATGCTAGCAGACCTAGATCTGGTGCTACTCAGTTGTACTCATTATCATCGCAGCGATCCCAAGCGTCGTTTCCATCTTTTAGATCAAGGGTTTCGGATACTGCTGGTGATAATACGAGTAGTGCCACTCATCGTGGTGTTGGCAAGAATTCAACTCAGATTTCATCTGCAGGCGGGTCTCCTGTAATGAAGATACTGAGGCCAGATCCAGTAACGCCTAGTAATAATAATCCACCCATAGTGAACTTTTCCCATTTTTCACGACCAGCTGCTCTTGCGAAGGCTAATGTTCAGACCAACGGTGTGATGGCTGGCTCAGGTTCATCAAGCATGATAAGGATTGCAAATAAGGACAAGTTTTCAGCTGCAACTGGTAACAATCTGCCCGAGTCAATGCCAATTGATTCAAGCAGTAGTGCACAAAAGGAGTCAAATTCACAATGCCAACAGATTCTAGTGAGATCCAGTGTTGAATTGAAACCAACAGAAGCTAAGCCTCTTGAGGAACCATGTACTGCTAAGCAGTCTGAGGGAACATGCCAAGAGGAAACCTCTAAGGATGACATAAATTCCAATCATATTCCTTGTGAAAGTGCAGTTAGGGTATCTCCGAATGGTGAAAAAACTGTGGAGCCAGTTGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGAGAGAGGTTCAGATGACCCAACACAAGCTTTGAAGAGAAAATTTCGTGAGACTGATGAGTCTGAATGCCATAGTGATGTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

435

Amino Acids

46.71

Weight (kDa)

5.32

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1276
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	3 cut(s)	597, 746, 1002
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	7 cut(s)	221, 255, 377, 694, 979, 1114, 1259
AfaI	GTAC	3 cut(s)	356, 584, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	536, 566
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	9 cut(s)	45, 59, 322, 535, 699, 954, 1019, 1024, 1252
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	6 cut(s)	16, 150, 815, 911, 1037, 1247
AluI	AGCT	6 cut(s)	16, 150, 815, 911, 1037, 1247
Alw21I	GWGCWC	1 cut(s)	967
Alw26I	GTCTC	2 cut(s)	729, 1262
Alw44I	GTGCAC	1 cut(s)	963
AlwI	GGATC	3 cut(s)	597, 746, 1002
Ama87I	CYCGRG	1 cut(s)	932
AoxI	GGCC	2 cut(s)	27, 746
ApaLI	GTGCAC	1 cut(s)	963
ApeKI	GCWGC	3 cut(s)	598, 815, 911
ApoI	RAATTY	7 cut(s)	221, 255, 377, 694, 979, 1114, 1259
AsuHPI	GGTGA	2 cut(s)	665, 1175
AsuNHI	GCTAGC	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	932
BaeGI	GKGCMC	1 cut(s)	967
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	967
BbvI	GCAGC	3 cut(s)	610, 802, 898
BccI	CCATC	5 cut(s)	19, 277, 280, 628, 847
BciVI	GTATCC	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	729, 1262
BfaI	CTAG	7 cut(s)	126, 384, 450, 552, 561, 765, 1001
BfmI	CTRYAG	1 cut(s)	714
BfuI	GTATCC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	563
BisI	GCNGC	3 cut(s)	599, 816, 912
BlpI	GCTNAGC	2 cut(s)	1038, 1065
BlsI	GCNGC	3 cut(s)	600, 817, 913
BmcAI	AGTACT	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	932
BmiI	GGNNCC	3 cut(s)	528, 1053, 1179
BmsI	GCATC	2 cut(s)	93, 538
BmtI	GCTAGC	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
Bpu10I	CCTNAGC	2 cut(s)	862, 1204
Bpu1102I	GCTNAGC	2 cut(s)	1038, 1065
BpuEI	CTTGAG	2 cut(s)	92, 1067
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	536, 566
Bse1I	ACTGG	5 cut(s)	117, 755, 922, 1011, 1181
Bse8I	GATNNNNATC	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	4 cut(s)	30, 256, 304, 1111
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	536, 566
BseMII	CTCAG	7 cut(s)	270, 590, 716, 734, 876, 1065, 1218
BseNI	ACTGG	5 cut(s)	117, 755, 922, 1011, 1181
BseRI	GAGGAG	1 cut(s)	454
BseSI	GKGCMC	1 cut(s)	967
BseXI	GCAGC	3 cut(s)	610, 802, 898
BsgI	GTGCAG	2 cut(s)	468, 1161
Bsh1285I	CGRYCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	29, 748
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	967
BsiHKCI	CYCGRG	1 cut(s)	932
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	536, 566
BsmAI	GTCTC	2 cut(s)	729, 1262
BsmI	GAATGC	1 cut(s)	1289
BsnI	GGCC	2 cut(s)	29, 748
Bso31I	GGTCTC	1 cut(s)	729
BsoBI	CYCGRG	1 cut(s)	932
Bsp1286I	GDGCHC	1 cut(s)	967
Bsp143I	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
Bsp1720I	GCTNAGC	2 cut(s)	1038, 1065
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	2 cut(s)	29, 748
BspCNI	CTCAG	7 cut(s)	271, 589, 715, 735, 875, 1066, 1217
BspDI	ATCGAT	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	3 cut(s)	528, 1053, 1179
BspMAI	CTGCAG	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	555
BspPI	GGATC	3 cut(s)	597, 746, 1002
BspTNI	GGTCTC	1 cut(s)	729
BsrI	ACTGG	5 cut(s)	117, 755, 922, 1011, 1181
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
BssT1I	CCWWGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	156, 848, 1174
Bst6I	CTCTTC	1 cut(s)	1247
BstC8I	GCNNGC	3 cut(s)	553, 718, 859
BstF5I	GGATG	4 cut(s)	30, 256, 304, 1111
BstKTI	GATC	6 cut(s)	432, 566, 605, 632, 754, 1010
BstMAI	GTCTC	2 cut(s)	729, 1262
BstMBI	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
BstMCI	CGRYCG	1 cut(s)	432
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 821
BstNSI	RCATGY	2 cut(s)	310, 1086
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	1 cut(s)	967
BstV1I	GCAGC	3 cut(s)	610, 802, 898
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	3 cut(s)	563, 751, 1007
BstYI	RGATCY	3 cut(s)	563, 751, 1007
Bsu15I	ATCGAT	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	637
BsuRI	GGCC	2 cut(s)	29, 748
BsuTUI	ATCGAT	1 cut(s)	432
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	4 cut(s)	30, 256, 304, 1111
BtsIMutI	CAGTG	2 cut(s)	273, 1018
Cac8I	GCNNGC	3 cut(s)	553, 718, 859
CciI	TCATGA	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	3 cut(s)	355, 583, 1059
CviAII	CATG	7 cut(s)	307, 350, 362, 488, 877, 1056, 1083
CviQI	GTAC	3 cut(s)	355, 583, 1059
DpnI	GATC	6 cut(s)	431, 565, 604, 631, 753, 1009
DpnII	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
DrdI	GACNNNNNNGTC	1 cut(s)	1276
DseDI	GACNNNNNNGTC	1 cut(s)	1276
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	1247
EarI	CTCTTC	1 cut(s)	1247
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	932
EcoRI	GAATTC	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	7 cut(s)	310, 353, 365, 491, 880, 1059, 1086
FatI	CATG	7 cut(s)	306, 349, 361, 487, 876, 1055, 1082
FauI	CCCGC	1 cut(s)	713
Fnu4HI	GCNGC	3 cut(s)	599, 816, 912
FokI	GGATG	4 cut(s)	37, 263, 311, 1118
Fsp4HI	GCNGC	3 cut(s)	599, 816, 912
FspBI	CTAG	7 cut(s)	126, 384, 450, 552, 561, 765, 1001
GluI	GCNGC	3 cut(s)	599, 816, 912
HaeIII	GGCC	2 cut(s)	29, 748
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	600
Hin1II	CATG	7 cut(s)	310, 353, 365, 491, 880, 1059, 1086
HindIII	AAGCTT	1 cut(s)	1245
HinfI	GANTC	9 cut(s)	41, 133, 239, 467, 935, 950, 974, 997, 1277
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	665, 1175
Hpy166II	GTNNAC	2 cut(s)	790, 965
Hpy188III	TCNNGA	8 cut(s)	50, 71, 179, 243, 350, 807, 1046, 1265
Hpy8I	GTNNAC	2 cut(s)	790, 965
Hpy99I	CGWCG	1 cut(s)	616
HpyAV	CCTTC	3 cut(s)	27, 485, 820
HpyCH4III	ACNGT	3 cut(s)	156, 848, 1174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 821
Hsp92II	CATG	7 cut(s)	310, 353, 365, 491, 880, 1059, 1086
Kzo9I	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
LmnI	GCTCC	1 cut(s)	1177
Lsp1109I	GCAGC	3 cut(s)	610, 802, 898
LweI	GCATC	2 cut(s)	93, 538
MaeI	CTAG	7 cut(s)	126, 384, 450, 552, 561, 765, 1001
MaeIII	GTNAC	2 cut(s)	757, 920
MalI	GATC	6 cut(s)	431, 565, 604, 631, 753, 1009
MboI	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
MboII	GAAGA	6 cut(s)	142, 223, 267, 748, 1185, 1264
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	3 cut(s)	563, 751, 1007
MhlI	GDGCHC	1 cut(s)	967
MlyI	GAGTC	3 cut(s)	944, 983, 1286
MmeI	TCCRAC	1 cut(s)	216
MseI	TTAA	2 cut(s)	144, 162
MslI	CAYNNNNRTG	3 cut(s)	492, 681, 1293
MspA1I	CMGCKG	2 cut(s)	815, 911
MspI	CCGG	1 cut(s)	30
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	1 cut(s)	1289
MwoI	GCNNNNNNNGC	2 cut(s)	401, 821
NdeII	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
NheI	GCTAGC	1 cut(s)	551
NlaIII	CATG	7 cut(s)	310, 353, 365, 491, 880, 1059, 1086
NlaIV	GGNNCC	3 cut(s)	528, 1053, 1179
NspI	RCATGY	2 cut(s)	310, 1086
PagI	TCATGA	1 cut(s)	349
PciI	ACATGT	1 cut(s)	306
PctI	GAATGC	1 cut(s)	1289
PfeI	GAWTC	6 cut(s)	41, 133, 239, 467, 950, 997
PkrI	GCNGC	3 cut(s)	600, 817, 913
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	3 cut(s)	943, 982, 1285
PpsI	GAGTC	3 cut(s)	943, 982, 1285
PscI	ACATGT	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	528, 1053, 1179
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	3 cut(s)	563, 751, 1007
PvuI	CGATCG	1 cut(s)	432
PvuII	CAGCTG	2 cut(s)	815, 911
RsaI	GTAC	3 cut(s)	356, 584, 1060
RsaNI	GTAC	3 cut(s)	355, 583, 1059
RseI	CAYNNNNRTG	3 cut(s)	492, 681, 1293
SaqAI	TTAA	2 cut(s)	144, 162
SatI	GCNGC	3 cut(s)	599, 816, 912
Sau3AI	GATC	6 cut(s)	429, 563, 602, 629, 751, 1007
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	3 cut(s)	944, 983, 1286
SduI	GDGCHC	1 cut(s)	967
SfaNI	GCATC	2 cut(s)	93, 538
SfcI	CTRYAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	3 cut(s)	492, 681, 1293
SmlI	CTYRAG	2 cut(s)	71, 1046
SmoI	CTYRAG	2 cut(s)	71, 1046
SsiI	CCGC	1 cut(s)	720
SspMI	CTAG	7 cut(s)	126, 384, 450, 552, 561, 765, 1001
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	3 cut(s)	156, 848, 1174
TaqI	TCGA	3 cut(s)	178, 428, 432
TatI	WGTACW	3 cut(s)	354, 582, 1058
TfiI	GAWTC	6 cut(s)	41, 133, 239, 467, 950, 997
Tru1I	TTAA	2 cut(s)	144, 162
Tru9I	TTAA	2 cut(s)	144, 162
TscAI	CASTG	2 cut(s)	273, 1018
TseI	GCWGC	3 cut(s)	598, 815, 911
TspDTI	ATGAA	5 cut(s)	267, 504, 699, 749, 858
TspGWI	ACGGA	2 cut(s)	126, 249
TspRI	CASTG	2 cut(s)	273, 1018
VneI	GTGCAC	1 cut(s)	963
XapI	RAATTY	7 cut(s)	221, 255, 377, 694, 979, 1114, 1259
XceI	RCATGY	2 cut(s)	310, 1086
XcmI	CCANNNNNNNNNTGG	1 cut(s)	850
XspI	CTAG	7 cut(s)	126, 384, 450, 552, 561, 765, 1001
ZrmI	AGTACT	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.