Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Forward (+)

7200894 .. 7208685

Gene Structure 7792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG092700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2067 bp

ATGCCTTTATCGGAGCTATATCGAATGGCCAGAGGGAGGAGTGATTCGAATCCAGATTTCGAACCTGTGAATGATTTTGTTGAACTGGTATGGGAAAATGGGCAGATTATGATGCAAGGTCAATCCAGTAGAGCTAGAAAGAGTCCAACTTTTAACAGCTTACCATCTCACACCCCCAAGAATCGAGATAGAGATTTAGGAAATGGAACCAATGGGAAGATGGGGAAATTTGGGTCAGTGGACTCTGTGATGGATGAAATTGCATTGTCGGTGCCATCTGTTGAAATGGGTTTGAGTGACGATGATGACATGTTGCCTTGGTTGAATTATGCCCTTGATCAACCTTTACAACATGAATATAGCCATGATTTTATGCCTGAAATATCTGGTGTCAATGCAAATGAGATTTCCACCAATGGCAATCTCGCATCAATCGAGAAAAGGAGTAGTTCTAGTCAGATATATAGGGAGTGCAGCCCCAATTCTACCCATGGAGGTGCTCTTTTGGAACAAAGGAATGTATCAAAACTTTCTTCAATAAGTGCTGCTGAGGTTAGCAGACCTAGAACTAGTACTACTCACTTATACCAGATGTCATCACAGCAATCCCAAGCATCAATTCCATCTTTTAGATCAATCGCTTCGGATATGGTTGCTGTTAACACAAGTAGTGCCGACCATCATGCTGTTTGCAAGAATTCAATTCAGGCTTCACCTGCAGGTGGTTTTCCTGGCATAACAACGCAGAAGCAAAATCCGCCGACTCCTAGTAATAATAATTCAACCATAGTGAACTTTTCCCATTTCTCACGACCTGCTACTCTTGCAAAAGCCAATCTTCACAATAATGGTGCAACGTCTAGCTCGAGTTTAGTAAGGGTGGAAAAGATTGGAAATAAGGATAAGGTTTCAGTTGCAACTAGTAGCAATCCTCCTGAGTCGATACTAATCGAATCAAGCTGCAGTTTACTGAAGGAGTCAACTTCACTGTGCCAAGATGTTATGGCCCCCTCCAGTGTTGATATGAAACCAACCGCATCTAAGTCTCTTGAGGAACCACGTACTACTAAACAGTCTGAGGCTGCATATCAAGAGGATGCCTCTAAGAATGATGACACAAACTCCAATCATATTCCTTGTGAAAGCCCAATTAGGGCACTTCCAGATGCTGAAAAAACTACAGAGCCTGTGGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGAGAAAGCTTCAGATGATCCAGCTCGTGCGTTGAAGAGAAAATCTCGTGATACTGATGACTCTGAATGCCATAGTGAAGATGTAGAGGAAGAATCTGTGCGCGTGAAAAAGGTAGCTCACGGTCGAGGTACAGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAACTTATCAGAAAGGAGGCGAAGGGATAGAATCAATGAAAAGATGCGGGCGCTTCAAGAGCTCATACCTAATTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATTTGAAGACACTTCAACTCCAAGTACAGATTATGTCGATGGGAGCTGGTTTGTATATGCCACAAATGATGTTACAACCAGGAATGCAACACATGCATGCACCCCGTATGGCTCATTTCTCGCACATGGGTGTTGGAATGGGAATGGGATTGGGCATGGGTTTTGGGATGGGTATGCCTGACATGAATGGTGGATCTTCTGGTTACCCTATGCTTCAGGTGCCTCCTATGCAAGGTGCACATTTTCCTGGTTCACCAATGTCAGGGCATACTGCGTTCAATGGGATGGTAGGAGCTAACCTTCAGATGTTTGGGCTTCCTGGTCAAGGAGTTCCCATACCGATGCAACGCGCACCCTTAGTTCCTATATCTGGAGGGCCCTTTATGAAGTCAGCTGTACGACCGAATGGTTGTGGTGCAGGAGGTCCTGTAGAACCAGCTCAAGCTTCTAGTTCAAAGGATTCAGTGCAGAACATGAACTCTCAAGTGATGCAAAACACCAACACCAATAGCTCCATGAATCAGACTTCTAATCAGGTTGTTGCATTTACCATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

688

Amino Acids

74.11

Weight (kDa)

6.27

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	461 - 508	8.9e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	467 - 510	2.7e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	710, 724
Acc36I	ACCTGC	3 cut(s)	710, 724, 823
AccB1I	GGYRCC	2 cut(s)	271, 1726
AccII	CGCG	2 cut(s)	1326, 1857
AciI	CCGC	3 cut(s)	758, 1035, 1435
AclWI	GGATC	2 cut(s)	1235, 1708
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	227, 697
AcuI	CTGAAG	4 cut(s)	992, 1218, 1706, 1793
AfaI	GTAC	5 cut(s)	574, 1063, 1354, 1533, 1905
AfiI	CCNNNNNNNGG	7 cut(s)	36, 722, 1153, 1739, 1769, 1832, 1877
AflIII	ACRYGT	1 cut(s)	309
AhlI	ACTAGT	2 cut(s)	569, 920
AjnI	CCWGG	4 cut(s)	730, 1585, 1753, 1825
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AleI	CACNNNNGTG	1 cut(s)	1635
Alw21I	GWGCWC	3 cut(s)	502, 1452, 1747
Alw26I	GTCTC	1 cut(s)	1050
Alw44I	GTGCAC	1 cut(s)	1743
AlwI	GGATC	2 cut(s)	1235, 1708
AlwNI	CAGNNNCTG	2 cut(s)	1169, 1187
Ama87I	CYCGRG	1 cut(s)	865
AoxI	GGCC	4 cut(s)	27, 1005, 1497, 1883
ApaI	GGGCCC	1 cut(s)	1887
ApaLI	GTGCAC	1 cut(s)	1743
ApeKI	GCWGC	5 cut(s)	474, 545, 960, 1082, 1376
ApoI	RAATTY	2 cut(s)	227, 697
AspLEI	GCGC	3 cut(s)	1326, 1441, 1859
AspS9I	GGNCC	4 cut(s)	1006, 1883, 1884, 1931
AsuHPI	GGTGA	2 cut(s)	705, 1752
AsuII	TTCGAA	2 cut(s)	47, 60
AvaI	CYCGRG	1 cut(s)	865
AvaII	GGWCC	1 cut(s)	1931
BaeGI	GKGCMC	3 cut(s)	1159, 1747, 1887
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	2 cut(s)	271, 1726
BanII	GRGCYC	2 cut(s)	1452, 1887
BauI	CACGAG	2 cut(s)	1248, 1269
BbsI	GAAGAC	1 cut(s)	1520
Bbv12I	GWGCWC	3 cut(s)	502, 1452, 1747
BbvCI	CCTCAGC	1 cut(s)	549
BbvI	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BccI	CCATC	9 cut(s)	172, 214, 244, 283, 631, 687, 1540, 1669, 1786
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	4 cut(s)	732, 1587, 1755, 1827
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	1050
BcuI	ACTAGT	2 cut(s)	569, 920
BfaI	CTAG	8 cut(s)	135, 453, 564, 570, 768, 861, 921, 1956
BfmI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
BfoI	RGCGCY	1 cut(s)	1442
BfuAI	ACCTGC	3 cut(s)	710, 724, 823
BisI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
BlsI	GCNGC	5 cut(s)	476, 547, 962, 1084, 1378
BmcAI	AGTACT	1 cut(s)	574
Bme1390I	CCNGG	4 cut(s)	732, 1587, 1755, 1827
Bme18I	GGWCC	1 cut(s)	1931
BmeT110I	CYCGRG	1 cut(s)	865
BmgT120I	GGNCC	4 cut(s)	1006, 1883, 1884, 1931
BmiI	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1728, 1885
BmrFI	CCNGG	4 cut(s)	732, 1587, 1755, 1827
BmsI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
BpiI	GAAGAC	1 cut(s)	1520
BplI	GAGNNNNNCTC	4 cut(s)	1085, 1117, 1252, 1284
BpmI	CTGGAG	2 cut(s)	997, 1899
Bpu10I	CCTNAGC	2 cut(s)	549, 1210
Bpu14I	TTCGAA	2 cut(s)	47, 60
BpuEI	CTTGAG	3 cut(s)	1070, 1932, 1974
BsaAI	YACGTR	1 cut(s)	1061
BsaBI	GATNNNNATC	2 cut(s)	48, 947
BsaJI	CCNNGG	2 cut(s)	317, 490
BsaXI	ACNNNNNCTCC	6 cut(s)	1106, 1136, 1509, 1539, 1920, 1950
Bsc4I	CCNNNNNNNGG	7 cut(s)	36, 722, 1153, 1739, 1769, 1832, 1877
Bse1I	ACTGG	3 cut(s)	90, 126, 1014
Bse8I	GATNNNNATC	2 cut(s)	48, 947
BseBI	CCWGG	4 cut(s)	732, 1587, 1755, 1827
BseDI	CCNNGG	2 cut(s)	317, 490
BseGI	GGATG	4 cut(s)	259, 1102, 1680, 1797
BseJI	GATNNNNATC	2 cut(s)	48, 947
BseLI	CCNNNNNNNGG	7 cut(s)	36, 722, 1153, 1739, 1769, 1832, 1877
BseMII	CTCAG	4 cut(s)	540, 927, 1068, 1224
BseNI	ACTGG	3 cut(s)	90, 126, 1014
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	3 cut(s)	1159, 1747, 1887
BseXI	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BsgI	GTGCAG	3 cut(s)	493, 1944, 1994
Bsh1236I	CGCG	2 cut(s)	1326, 1857
Bsh1285I	CGRYCG	2 cut(s)	1348, 1910
BshFI	GGCC	4 cut(s)	29, 1007, 1499, 1885
BshNI	GGYRCC	2 cut(s)	271, 1726
BsiEI	CGRYCG	2 cut(s)	1348, 1910
BsiHKAI	GWGCWC	3 cut(s)	502, 1452, 1747
BsiHKCI	CYCGRG	1 cut(s)	865
BslI	CCNNNNNNNGG	7 cut(s)	36, 722, 1153, 1739, 1769, 1832, 1877
BsmAI	GTCTC	1 cut(s)	1050
BsmI	GAATGC	2 cut(s)	1295, 1596
BsnI	GGCC	4 cut(s)	29, 1007, 1499, 1885
BsoBI	CYCGRG	1 cut(s)	865
Bsp119I	TTCGAA	2 cut(s)	47, 60
Bsp120I	GGGCCC	1 cut(s)	1883
Bsp1286I	GDGCHC	5 cut(s)	502, 1159, 1452, 1747, 1887
Bsp143I	GATC	4 cut(s)	337, 632, 1240, 1700
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	3 cut(s)	758, 1035, 1435
BspANI	GGCC	4 cut(s)	29, 1007, 1499, 1885
BspCNI	CTCAG	4 cut(s)	541, 928, 1069, 1223
BspFNI	CGCG	2 cut(s)	1326, 1857
BspLI	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1728, 1885
BspMAI	CTGCAG	2 cut(s)	721, 965
BspMI	ACCTGC	3 cut(s)	710, 724, 823
BspPI	GGATC	2 cut(s)	1235, 1708
BspT104I	TTCGAA	2 cut(s)	47, 60
BspT107I	GGYRCC	2 cut(s)	271, 1726
BsrI	ACTGG	3 cut(s)	90, 126, 1014
BssECI	CCNNGG	2 cut(s)	317, 490
BssMI	GATC	4 cut(s)	337, 632, 1240, 1700
BssSI	CACGAG	2 cut(s)	1248, 1269
BssT1I	CCWWGG	2 cut(s)	317, 490
Bst2BI	CACGAG	2 cut(s)	1248, 1269
Bst2UI	CCWGG	4 cut(s)	732, 1587, 1755, 1827
Bst4CI	ACNGT	3 cut(s)	990, 1074, 1346
Bst6I	CTCTTC	1 cut(s)	1253
BstAPI	GCANNNNNTGC	1 cut(s)	1600
BstBAI	YACGTR	1 cut(s)	1061
BstBI	TTCGAA	2 cut(s)	47, 60
BstC8I	GCNNGC	2 cut(s)	1437, 1605
BstDEI	CTNAG	7 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864
BstDSI	CCRYGG	1 cut(s)	490
BstEII	GGTNACC	1 cut(s)	1709
BstENI	CCTNNNNNAGG	2 cut(s)	1737, 1830
BstF5I	GGATG	4 cut(s)	259, 1102, 1680, 1797
BstFNI	CGCG	2 cut(s)	1326, 1857
BstH2I	RGCGCY	1 cut(s)	1442
BstHHI	GCGC	3 cut(s)	1326, 1441, 1859
BstKTI	GATC	4 cut(s)	340, 635, 1243, 1703
BstMAI	GTCTC	1 cut(s)	1050
BstMBI	GATC	4 cut(s)	337, 632, 1240, 1700
BstMCI	CGRYCG	2 cut(s)	1348, 1910
BstMWI	GCNNNNNNNGC	7 cut(s)	716, 757, 824, 1447, 1600, 1726, 1735
BstNI	CCWGG	4 cut(s)	732, 1587, 1755, 1827
BstNSI	RCATGY	3 cut(s)	313, 1603, 1607
BstPI	GGTNACC	1 cut(s)	1709
BstSCI	CCNGG	4 cut(s)	730, 1585, 1753, 1825
BstSFI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
BstSLI	GKGCMC	3 cut(s)	1159, 1747, 1887
BstUI	CGCG	2 cut(s)	1326, 1857
BstV1I	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
BstV2I	GAAGAC	1 cut(s)	1520
BstX2I	RGATCY	1 cut(s)	1700
BstYI	RGATCY	1 cut(s)	1700
BsuRI	GGCC	4 cut(s)	29, 1007, 1499, 1885
BtgI	CCRYGG	1 cut(s)	490
BtsCI	GGATG	4 cut(s)	259, 1102, 1680, 1797
BtsIMutI	CAGTG	4 cut(s)	243, 986, 1021, 1977
BveI	ACCTGC	3 cut(s)	710, 724, 823
Cac8I	GCNNGC	2 cut(s)	1437, 1605
CaiI	CAGNNNCTG	2 cut(s)	1169, 1187
CfoI	GCGC	3 cut(s)	1326, 1441, 1859
Cfr13I	GGNCC	4 cut(s)	1006, 1883, 1884, 1931
Csp6I	GTAC	5 cut(s)	573, 1062, 1353, 1532, 1904
CviQI	GTAC	5 cut(s)	573, 1062, 1353, 1532, 1904
DdeI	CTNAG	7 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864
DpnI	GATC	4 cut(s)	339, 634, 1242, 1702
DpnII	GATC	4 cut(s)	337, 632, 1240, 1700
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	1253
EarI	CTCTTC	1 cut(s)	1253
EciI	GGCGGA	1 cut(s)	747
Ecl136II	GAGCTC	1 cut(s)	1450
Eco130I	CCWWGG	2 cut(s)	317, 490
Eco24I	GRGCYC	2 cut(s)	1452, 1887
Eco47I	GGWCC	1 cut(s)	1931
Eco53kI	GAGCTC	1 cut(s)	1450
Eco57I	CTGAAG	4 cut(s)	992, 1218, 1706, 1793
Eco88I	CYCGRG	1 cut(s)	865
Eco91I	GGTNACC	1 cut(s)	1709
EcoICRI	GAGCTC	1 cut(s)	1450
EcoNI	CCTNNNNNAGG	2 cut(s)	1737, 1830
EcoO109I	RGGNCCY	3 cut(s)	1883, 1884, 1931
EcoO65I	GGTNACC	1 cut(s)	1709
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	4 cut(s)	730, 1585, 1753, 1825
EcoT14I	CCWWGG	2 cut(s)	317, 490
EcoT22I	ATGCAT	1 cut(s)	1605
EcoT38I	GRGCYC	2 cut(s)	1452, 1887
ErhI	CCWWGG	2 cut(s)	317, 490
FalI	AAGNNNNNCTT	2 cut(s)	822, 854
FauI	CCCGC	1 cut(s)	1428
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
FokI	GGATG	4 cut(s)	266, 1109, 1687, 1804
FriOI	GRGCYC	2 cut(s)	1452, 1887
Fsp4HI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
FspBI	CTAG	8 cut(s)	135, 453, 564, 570, 768, 861, 921, 1956
GlaI	GCGC	3 cut(s)	1325, 1440, 1858
GluI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
GsuI	CTGGAG	2 cut(s)	997, 1899
HaeII	RGCGCY	1 cut(s)	1442
HaeIII	GGCC	4 cut(s)	29, 1007, 1499, 1885
HhaI	GCGC	3 cut(s)	1326, 1441, 1859
Hin6I	GCGC	3 cut(s)	1324, 1439, 1857
HinP1I	GCGC	3 cut(s)	1324, 1439, 1857
HincII	GTYRAC	2 cut(s)	661, 981
HindII	GTYRAC	2 cut(s)	661, 981
HindIII	AAGCTT	3 cut(s)	1230, 1479, 1950
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	2 cut(s)	705, 1752
Hpy166II	GTNNAC	8 cut(s)	241, 661, 793, 968, 981, 1474, 1745, 1760
Hpy188I	TCNGA	9 cut(s)	13, 459, 646, 1078, 1237, 1288, 1399, 1812, 2031
Hpy8I	GTNNAC	8 cut(s)	241, 661, 793, 968, 981, 1474, 1745, 1760
HpyAV	CCTTC	3 cut(s)	967, 1404, 1817
HpyCH4III	ACNGT	3 cut(s)	990, 1074, 1346
HpyCH4IV	ACGT	2 cut(s)	857, 1060
HpyF10VI	GCNNNNNNNGC	7 cut(s)	716, 757, 824, 1447, 1600, 1726, 1735
HpyF3I	CTNAG	7 cut(s)	549, 936, 1041, 1077, 1104, 1210, 1864
HpySE526I	ACGT	2 cut(s)	857, 1060
HspAI	GCGC	3 cut(s)	1324, 1439, 1857
Ksp22I	TGATCA	1 cut(s)	337
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	4 cut(s)	337, 632, 1240, 1700
LmnI	GCTCC	4 cut(s)	13, 1550, 1799, 2024
Lsp1109I	GCAGC	5 cut(s)	486, 532, 947, 1069, 1388
LweI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
MaeI	CTAG	8 cut(s)	135, 453, 564, 570, 768, 861, 921, 1956
MaeII	ACGT	2 cut(s)	857, 1060
MaeIII	GTNAC	3 cut(s)	296, 1578, 1709
MalI	GATC	4 cut(s)	339, 634, 1242, 1702
MboI	GATC	4 cut(s)	337, 632, 1240, 1700
MboII	GAAGA	9 cut(s)	229, 525, 830, 1191, 1270, 1313, 1325, 1525, 1695
MflI	RGATCY	1 cut(s)	1700
MhlI	GDGCHC	5 cut(s)	502, 1159, 1452, 1747, 1887
MlsI	TGGCCA	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	6 cut(s)	151, 236, 757, 947, 986, 1277
MmeI	TCCRAC	2 cut(s)	170, 1621
Mox20I	TGGCCA	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	1605
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	153, 660
MslI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	1901
MspR9I	CCNGG	4 cut(s)	732, 1587, 1755, 1827
Mva1269I	GAATGC	2 cut(s)	1295, 1596
MvaI	CCWGG	4 cut(s)	732, 1587, 1755, 1827
MvnI	CGCG	2 cut(s)	1326, 1857
MwoI	GCNNNNNNNGC	7 cut(s)	716, 757, 824, 1447, 1600, 1726, 1735
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	4 cut(s)	337, 632, 1240, 1700
NlaIV	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1728, 1885
NmuCI	GTSAC	1 cut(s)	296
NsiI	ATGCAT	1 cut(s)	1605
NspI	RCATGY	3 cut(s)	313, 1603, 1607
NspV	TTCGAA	2 cut(s)	47, 60
OliI	CACNNNNGTG	1 cut(s)	1635
PaeI	GCATGC	1 cut(s)	1607
PaeR7I	CTCGAG	1 cut(s)	865
PaqCI	CACCTGC	2 cut(s)	710, 724
PciI	ACATGT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	2 cut(s)	432, 863
PctI	GAATGC	2 cut(s)	1295, 1596
PfeI	GAWTC	8 cut(s)	44, 49, 181, 953, 1316, 1419, 1967, 2026
PkrI	GCNGC	5 cut(s)	476, 547, 962, 1084, 1378
PleI	GAGTC	6 cut(s)	150, 236, 757, 946, 985, 1277
PpsI	GAGTC	6 cut(s)	150, 236, 757, 946, 985, 1277
Ppu21I	YACGTR	1 cut(s)	1061
PpuMI	RGGWCCY	1 cut(s)	1931
PscI	ACATGT	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	1452
Psp5II	RGGWCCY	1 cut(s)	1931
Psp6I	CCWGG	4 cut(s)	730, 1585, 1753, 1825
PspEI	GGTNACC	1 cut(s)	1709
PspGI	CCWGG	4 cut(s)	730, 1585, 1753, 1825
PspN4I	GGNNCC	7 cut(s)	208, 273, 1008, 1056, 1360, 1728, 1885
PspOMI	GGGCCC	1 cut(s)	1883
PspPI	GGNCC	4 cut(s)	1006, 1883, 1884, 1931
PspPPI	RGGWCCY	1 cut(s)	1931
PspXI	VCTCGAGB	1 cut(s)	865
PsrI	GAACNNNNNNTAC	2 cut(s)	559, 591
PstI	CTGCAG	2 cut(s)	721, 965
PstNI	CAGNNNCTG	2 cut(s)	1169, 1187
PsuI	RGATCY	1 cut(s)	1700
PvuII	CAGCTG	1 cut(s)	1901
RsaI	GTAC	5 cut(s)	574, 1063, 1354, 1533, 1905
RsaNI	GTAC	5 cut(s)	573, 1062, 1353, 1532, 1904
RseI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
SacI	GAGCTC	1 cut(s)	1452
SaqAI	TTAA	2 cut(s)	153, 660
SatI	GCNGC	5 cut(s)	475, 546, 961, 1083, 1377
Sau3AI	GATC	4 cut(s)	337, 632, 1240, 1700
Sau96I	GGNCC	4 cut(s)	1006, 1883, 1884, 1931
SbfI	CCTGCAGG	1 cut(s)	721
ScaI	AGTACT	1 cut(s)	574
SchI	GAGTC	6 cut(s)	151, 236, 757, 947, 986, 1277
ScrFI	CCNGG	4 cut(s)	732, 1587, 1755, 1827
SdaI	CCTGCAGG	1 cut(s)	721
SduI	GDGCHC	5 cut(s)	502, 1159, 1452, 1747, 1887
SfaNI	GCATC	9 cut(s)	102, 437, 623, 1046, 1087, 1156, 1422, 1839, 1986
SfcI	CTRYAG	4 cut(s)	717, 961, 1179, 1935
Sfr274I	CTCGAG	1 cut(s)	865
SfuI	TTCGAA	2 cut(s)	47, 60
SinI	GGWCC	1 cut(s)	1931
SlaI	CTCGAG	1 cut(s)	865
SmiMI	CAYNNNNRTG	5 cut(s)	495, 846, 1602, 1635, 1847
SmlI	CTYRAG	4 cut(s)	865, 1049, 1947, 1989
SmoI	CTYRAG	4 cut(s)	865, 1049, 1947, 1989
SpeI	ACTAGT	2 cut(s)	569, 920
SphI	GCATGC	1 cut(s)	1607
Sse8387I	CCTGCAGG	1 cut(s)	721
SsiI	CCGC	3 cut(s)	758, 1035, 1435
SspMI	CTAG	8 cut(s)	135, 453, 564, 570, 768, 861, 921, 1956
SstI	GAGCTC	1 cut(s)	1452
StyD4I	CCNGG	4 cut(s)	730, 1585, 1753, 1825
StyI	CCWWGG	2 cut(s)	317, 490
TaaI	ACNGT	3 cut(s)	990, 1074, 1346
TaiI	ACGT	2 cut(s)	860, 1063
TaqII	GACCGA	1 cut(s)	1924
TatI	WGTACW	2 cut(s)	572, 1531
TfiI	GAWTC	8 cut(s)	44, 49, 181, 953, 1316, 1419, 1967, 2026
Tru1I	TTAA	2 cut(s)	153, 660
Tru9I	TTAA	2 cut(s)	153, 660
TscAI	CASTG	4 cut(s)	243, 993, 1021, 1977
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	5 cut(s)	474, 545, 960, 1082, 1376
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	8 cut(s)	270, 369, 1040, 1440, 1706, 1907, 1997, 2039
TspRI	CASTG	4 cut(s)	243, 993, 1021, 1977
VneI	GTGCAC	1 cut(s)	1743
VpaK11BI	GGWCC	1 cut(s)	1931
XagI	CCTNNNNNAGG	2 cut(s)	1737, 1830
XapI	RAATTY	2 cut(s)	227, 697
XceI	RCATGY	3 cut(s)	313, 1603, 1607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	865
XspI	CTAG	8 cut(s)	135, 453, 564, 570, 768, 861, 921, 1956
ZrmI	AGTACT	1 cut(s)	574
Zsp2I	ATGCAT	1 cut(s)	1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.