Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

27981608 .. 27983929

Gene Structure 2322 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1198900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGTGTGAAGAAAGGAGATCATGCTCGAGGCATGGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAATTTATCGGAAAGGAGGCGAAGGGACAGAATCAATGAGAAGATGCGTGCGCTACAGGAACTCATACCCAATTGCAATAAGGTGGACAAAGCTTCAATGCTCGATGAGGCTATTGAGTATTTGAAGACGCTTCAACTCCAAGTACAGATGATGTCAATGGGGGCTGGTATGTATATGCCACCAATGATGTTACCACCAGGAATGCAACACATGCATGGACCCTGTATGGCTCATTTCTCGCCCATGGGTGTTGGAATGGGAATGGGAATGGGATTAGGCATGGGTTTTGGGATGGGTATGCCCGACATGAATGGTGCATCTTCTAGTTACCCTATGCTTCAGGTGCCCCCCATGCAAGGAGCACATTTCCCCGGTTCACATATGGCAGGGCACACCGCCTTCAATGGGATGATGGGATCTAACCTTCAGATGTTTGGGCTTCCTAGTCAAGGAGTTCCAGTGCCGATGCAACGTGCCCCCTTAGCTCCCTCATCGGCAGGTCCCTTTGTGAAGTCATCTGCAGGACTAAATGCAGGCAGTTCAGGAGGACCTGTGGAAAATGTGGAATCAGCTCCAGTTTCTGGTTCAAAGGATTCGGTTCAGAACATGAACTCACAAGCGATGCAAAACAGCAATGCCAATAGCTCTATGAATCAAACATCTAGTCAGGGCCAAGCAACTAATGAGGGATTTGGACAGTCTGCATTGGTGCGAAATAATGTTCAAGTGACGGATGTTAACAACAGCAGAGCTAACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

277

Amino Acids

29.15

Weight (kDa)

9.42

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	21 - 68	2.5e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	27 - 70	6.8e-08	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	650
AciI	CCGC	1 cut(s)	465
AclWI	GGATC	1 cut(s)	493
AcuI	CTGAAG	2 cut(s)	392, 479
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	425, 474, 518, 650
AgsI	TTSAA	6 cut(s)	165, 193, 203, 472, 657, 794
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	5 cut(s)	161, 554, 641, 714, 821
AluI	AGCT	5 cut(s)	161, 554, 641, 714, 821
Alw21I	GWGCWC	1 cut(s)	433
AlwI	GGATC	1 cut(s)	493
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	739
ApeKI	GCWGC	1 cut(s)	56
ArsI	GACNNNNNNTTYG	2 cut(s)	718, 750
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	287, 569, 617, 739
AsuC2I	CCSGG	1 cut(s)	441
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	3 cut(s)	287, 569, 617
BaeGI	GKGCMC	3 cut(s)	417, 462, 547
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	2 cut(s)	355, 475
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	441
BfaI	CTAG	3 cut(s)	393, 513, 732
BfmI	CTRYAG	2 cut(s)	122, 588
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	267, 441
Bme18I	GGWCC	3 cut(s)	287, 569, 617
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	4 cut(s)	287, 569, 617, 739
BmiI	GGNNCC	4 cut(s)	40, 289, 414, 571
BmrFI	CCNGG	2 cut(s)	267, 441
BmsI	GCATC	4 cut(s)	102, 395, 525, 681
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	550
BpuMI	CCSGG	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	312, 439
BsaXI	ACNNNNNCTCC	4 cut(s)	513, 543, 606, 636
Bsc4I	CCNNNNNNNGG	4 cut(s)	425, 474, 518, 650
Bse1I	ACTGG	2 cut(s)	527, 644
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	312, 439
BseGI	GGATG	3 cut(s)	366, 483, 808
BseLI	CCNNNNNNNGG	4 cut(s)	425, 474, 518, 650
BseMI	GCAATG	1 cut(s)	709
BseNI	ACTGG	2 cut(s)	527, 644
BseSI	GKGCMC	3 cut(s)	417, 462, 547
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	1 cut(s)	741
BshNI	GGYRCC	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	107, 555
BslI	CCNNNNNNNGG	4 cut(s)	425, 474, 518, 650
BsmFI	GGGAC	2 cut(s)	107, 555
BsmI	GAATGC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	741
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	4 cut(s)	417, 433, 462, 547
Bsp143I	GATC	2 cut(s)	19, 485
Bsp19I	CCATGG	1 cut(s)	312
BspACI	CCGC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	741
BspLI	GGNNCC	4 cut(s)	40, 289, 414, 571
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	557
BspPI	GGATC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	709
BsrI	ACTGG	2 cut(s)	527, 644
BssECI	CCNNGG	2 cut(s)	312, 439
BssMI	GATC	2 cut(s)	19, 485
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	768
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	117, 604
BstDEI	CTNAG	1 cut(s)	550
BstDSI	CCRYGG	1 cut(s)	312
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	3 cut(s)	366, 483, 808
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	22, 488
BstMBI	GATC	2 cut(s)	19, 485
BstMWI	GCNNNNNNNGC	4 cut(s)	280, 412, 421, 551
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	265, 439
BstSFI	CTRYAG	2 cut(s)	122, 588
BstSLI	GKGCMC	3 cut(s)	417, 462, 547
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	3 cut(s)	366, 483, 808
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	2 cut(s)	117, 604
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	287, 569, 617, 739
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	9 cut(s)	23, 34, 280, 284, 313, 349, 376, 421, 676
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	550
DpnI	GATC	2 cut(s)	21, 487
DpnII	GATC	2 cut(s)	19, 485
Eco130I	CCWWGG	1 cut(s)	312
Eco47I	GGWCC	3 cut(s)	287, 569, 617
Eco57I	CTGAAG	2 cut(s)	392, 479
Eco88I	CYCGRG	1 cut(s)	27
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	569, 617
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	9 cut(s)	26, 37, 283, 287, 316, 352, 379, 424, 679
FaqI	GGGAC	2 cut(s)	107, 555
FatI	CATG	9 cut(s)	22, 33, 279, 283, 312, 348, 375, 420, 675
FauNDI	CATATG	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	373, 490, 815
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	3 cut(s)	393, 513, 732
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	57
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	1 cut(s)	741
HapII	CCGG	1 cut(s)	441
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	9 cut(s)	26, 37, 283, 287, 316, 352, 379, 424, 679
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	99, 635, 662, 721
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	154, 446, 808
Hpy188I	TCNGA	3 cut(s)	79, 498, 672
Hpy188III	TCNNGA	1 cut(s)	612
Hpy8I	GTNNAC	3 cut(s)	154, 446, 808
HpyAV	CCTTC	3 cut(s)	84, 478, 503
HpyCH4III	ACNGT	1 cut(s)	768
HpyCH4IV	ACGT	1 cut(s)	541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	280, 412, 421, 551
HpyF3I	CTNAG	1 cut(s)	550
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	9 cut(s)	26, 37, 283, 287, 316, 352, 379, 424, 679
HspAI	GCGC	1 cut(s)	119
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	19, 485
LmnI	GCTCC	3 cut(s)	428, 559, 646
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	4 cut(s)	102, 395, 525, 681
MaeI	CTAG	3 cut(s)	393, 513, 732
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	3 cut(s)	258, 395, 796
MalI	GATC	2 cut(s)	21, 487
MboI	GATC	2 cut(s)	19, 485
MboII	GAAGA	4 cut(s)	22, 121, 205, 381
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	1 cut(s)	485
MhlI	GDGCHC	4 cut(s)	417, 433, 462, 547
MluCI	AATT	2 cut(s)	70, 139
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	23, 78, 169, 568, 608, 748
Mph1103I	ATGCAT	1 cut(s)	285
MseI	TTAA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	2 cut(s)	267, 441
MunI	CAATTG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	4 cut(s)	280, 412, 421, 551
NciI	CCSGG	1 cut(s)	441
NcoI	CCATGG	1 cut(s)	312
NdeI	CATATG	1 cut(s)	450
NdeII	GATC	2 cut(s)	19, 485
NlaIII	CATG	9 cut(s)	26, 37, 283, 287, 316, 352, 379, 424, 679
NlaIV	GGNNCC	4 cut(s)	40, 289, 414, 571
NmuCI	GTSAC	1 cut(s)	796
NsiI	ATGCAT	1 cut(s)	285
NspI	RCATGY	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	27
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	4 cut(s)	99, 635, 662, 721
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	1 cut(s)	58
PpuMI	RGGWCCY	2 cut(s)	569, 617
Psp5II	RGGWCCY	2 cut(s)	569, 617
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	4 cut(s)	40, 289, 414, 571
PspPI	GGNCC	4 cut(s)	287, 569, 617, 739
PspPPI	RGGWCCY	2 cut(s)	569, 617
PspXI	VCTCGAGB	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	485
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	2 cut(s)	19, 485
Sau96I	GGNCC	4 cut(s)	287, 569, 617, 739
ScrFI	CCNGG	2 cut(s)	267, 441
SduI	GDGCHC	4 cut(s)	417, 433, 462, 547
SfaNI	GCATC	4 cut(s)	102, 395, 525, 681
SfcI	CTRYAG	2 cut(s)	122, 588
Sfr274I	CTCGAG	1 cut(s)	27
SinI	GGWCC	3 cut(s)	287, 569, 617
SlaI	CTCGAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	70, 139
SsiI	CCGC	1 cut(s)	465
SspMI	CTAG	3 cut(s)	393, 513, 732
StyD4I	CCNGG	2 cut(s)	265, 439
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	1 cut(s)	768
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	28, 171
TasI	AATT	2 cut(s)	70, 139
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	4 cut(s)	99, 635, 662, 721
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	392, 692, 734
TspGWI	ACGGA	1 cut(s)	815
TspRI	CASTG	1 cut(s)	534
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	3 cut(s)	287, 569, 617
XagI	CCTNNNNNAGG	1 cut(s)	516
XceI	RCATGY	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	3 cut(s)	393, 513, 732
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.