Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Reverse (-)

27626949 .. 27633211

Gene Structure 6263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1185100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2148 bp

ATGCCTTTTTCCGAGCTTTATCGGATGGCCGGAAGGGTTGATTCAAGTCAAGATTTTGAAAATGATTTTCTTGAGTTGGTATGGGAAAATGGTCAGGTTGTGATGCAGGGTCAGTCCAGTAGAACTAGGAAGAATCCATCTTGTAATACCTTACCGTCTTATAACACCCCGAAAAATCGAGATAGAGATGTAGGAAATAGCAACATTGGGAAGACAGGGAAATTTGGGTTTGTGGTGGATTCTGAATTGGATGAAATTCCGTTGTCGGTGCCATCTTCTGAGATGGGTTTGAGTGAGGATGATGACACGTTGCCTTGGTTGAATTATTCCATTGATGAGCCTTTACATCATGAGTACTGTCATGATTTTTTGCCTGAATTTTCTAGTGCAACTGCAAATGAGGCTTCCTCCAATCATAATCTTGCCTCGATCGATAAGAGGAGTAGTTCTAGTCAGGTGCTTAGGGATTCCAATCCCAATTCTGCACATGAAGATGCTTGTTTGCAACAAAGGAATGTGGGAAAGGTTGCTTTAATCGGCCGTGCTGATGTTAGCAGGCCTAGAACTGGTACTAGTCAGTTGTACTCGTTATCATCGCAGCAATCTCAAGCATCGTATCCATCTTTCAGATCAAGGGTTTCGGATACTGCTGGTGATAATACTAGTGCCACCCATCGTGATGTTGGCAAGAATTCAAATCAGATTTCATCTACGGGTGGTTTTCCTGGAATGAAAATGCAGAGGCAAGATCCAGTAATGCCTAGAAACACTAATCCATCCATAATGAACTTTACCCATTTTTCACGGCCAGCTGCTCTTGCAAAAGCTAATGTTCAGAACAACGGTGCGATGGCTGGCTCAGGTTCATCAAGCATGGAAAGGATTGAAAACAAGGACAAGTTTTCAGCTGCAACCAGGAACAATCTGCCCGAGTCAATGCTAATTGATTCAAGCAGTGGTGCACCGAAGGAGTCAAATTCACAATGCCAGCCAATTCTAGTGAGATCCAGTGATGAATTGAAAGCAACAAAAGCTAAGCCTCTCGAGGAACCATGTACTGCTAAGCGGTCTGAGGGGGCATGCCAAGAAGAAACCTCTAAGAATGACATAAACGCCAATGATAAACCTTGTGAAAGTGCTAGTAGGGTATCTCCGGGTGGTGAAAAAACTCTGGAACCTGTTGTTGCTTCTTCTGTTTGCTCAGGCAATAGTGTGGAGAGAGGTTCAGATGACCCAACACATGCTTTGAAGAGAAAATGTCGTGAGACTGACGAGTCTGAATGCCATAGTGATGACGTAGAGGATGAATCTGTGGGTGTCAAGAAAGGAGCTCATGCTCGGGGCAAGGGTTCCAAGAGAAGCAGAGCAGCAGAAGTGCATAATTTATCGGAAAGGAGGCGAAGGGACAGAATCAATGAGAAGATGCGTGCGCTACAGGAACTCATACCGAATTGCAACAAGGTGGACAAAGCTTCGATGCTCGATGAGGCTATTGAGTATTTAAAGACGCTTCAACTCCAAGTACAGATTATGTCAATGGGAGCTGGTATGTATATGCCACCAATGATGTTATCACCGGGAATGCAACACATGCATGGACCCCGTATGGCTCATTTCTCACCCATGGGTGTTGGAATGGGAATGGGAATGGGAATGGGATTAGGCATGGGTTTTGGGATGGGTATGCCCGACATGAATGGTGCATCTTCTAGTTACCCTATGCTTCAGGTGCCCCCCATGCAAGGAGCACATTTCCCTGGTCCACATATGGCAGGGCACAACGCCTTCAATGGGATGATGGGATCTAACCTTCAGATGTTTGGGCTTCCTAGTCAAGGAGTTCCTATGCAGATGCAATGTGCGCCCTTAGCTCCCTCATCAGGAGGTCCCCTTGTGAAGTCATCTGCAGGACCAAATGCAGGCAGTTCAGGAGGACCTGTGGAAAATGTGGAATCAGCTCCAGTTTCTGGTTCAAAGGATTTGGTGCAGAACATGAACTCTCAAGTGATGCAAAACAACAATGCCAATAGCTCTATCAATCCAACATCTAGTCAGGGCCAAGCAACAAATGAGGGATTTGGACAGACTGCATTGGTGCGAAATAATGTTCAAGCGGCTGATGCTAACAACAACAGAGCTAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

716

Amino Acids

76.9

Weight (kDa)

6.13

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	458 - 505	9.4e-14	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	464 - 507	2.9e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AasI	GACNNNNNNGTC	1 cut(s)	1273
AccB1I	GGYRCC	2 cut(s)	268, 1729
AccB7I	CCANNNNNTGG	1 cut(s)	1967
AciI	CCGC	2 cut(s)	1066, 2114
AclWI	GGATC	3 cut(s)	743, 999, 1810
AcoI	YGGCCR	3 cut(s)	27, 538, 806
AcsI	RAATTY	5 cut(s)	221, 255, 377, 691, 976
AcuI	CTGAAG	2 cut(s)	1709, 1796
AfaI	GTAC	5 cut(s)	356, 571, 584, 1057, 1524
AfiI	CCNNNNNNNGG	7 cut(s)	566, 1742, 1791, 1835, 1880, 1919, 1967
AflIII	ACRYGT	1 cut(s)	306
AhlI	ACTAGT	2 cut(s)	572, 662
AjnI	CCWGG	3 cut(s)	724, 914, 1756
Alw21I	GWGCWC	3 cut(s)	964, 1333, 1750
Alw26I	GTCTC	1 cut(s)	1259
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	3 cut(s)	743, 999, 1810
AlwNI	CAGNNNCTG	1 cut(s)	1967
Ama87I	CYCGRG	3 cut(s)	929, 1043, 1338
AoxI	GGCC	5 cut(s)	27, 538, 557, 806, 2056
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	4 cut(s)	598, 812, 908, 1367
ApoI	RAATTY	5 cut(s)	221, 255, 377, 691, 976
AspLEI	GCGC	2 cut(s)	1432, 1864
AspS9I	GGNCC	6 cut(s)	1598, 1760, 1886, 1910, 1934, 2056
AsuC2I	CCSGG	2 cut(s)	1155, 1578
AsuHPI	GGTGA	4 cut(s)	665, 1172, 1566, 1611
AvaI	CYCGRG	3 cut(s)	929, 1043, 1338
AvaII	GGWCC	5 cut(s)	1598, 1760, 1886, 1910, 1934
BaeGI	GKGCMC	3 cut(s)	964, 1734, 1779
BanI	GGYRCC	2 cut(s)	268, 1729
BanII	GRGCYC	1 cut(s)	1333
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	3 cut(s)	964, 1333, 1750
BbvI	GCAGC	4 cut(s)	610, 799, 895, 1379
BceAI	ACGGC	2 cut(s)	525, 821
BciT130I	CCWGG	3 cut(s)	726, 916, 1758
BciVI	GTATCC	2 cut(s)	627, 637
BcnI	CCSGG	2 cut(s)	1155, 1578
BcoDI	GTCTC	1 cut(s)	1259
BcuI	ACTAGT	2 cut(s)	572, 662
BfmI	CTRYAG	2 cut(s)	1433, 1905
BfuI	GTATCC	2 cut(s)	627, 637
BisI	GCNGC	5 cut(s)	599, 813, 909, 1368, 2115
BlpI	GCTNAGC	2 cut(s)	1035, 1062
BlsI	GCNGC	5 cut(s)	600, 814, 910, 1369, 2116
BmcAI	AGTACT	1 cut(s)	356
Bme1390I	CCNGG	5 cut(s)	726, 916, 1155, 1578, 1758
Bme18I	GGWCC	5 cut(s)	1598, 1760, 1886, 1910, 1934
BmeT110I	CYCGRG	3 cut(s)	929, 1043, 1338
BmgT120I	GGNCC	6 cut(s)	1598, 1760, 1886, 1910, 1934, 2056
BmiI	GGNNCC	7 cut(s)	270, 1050, 1176, 1351, 1600, 1731, 1888
BmrFI	CCNGG	5 cut(s)	726, 916, 1155, 1578, 1758
BmsI	GCATC	9 cut(s)	93, 484, 620, 1413, 1467, 1712, 1842, 1998, 2110
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	1944
Bpu10I	CCTNAGC	4 cut(s)	461, 859, 1201, 1867
Bpu1102I	GCTNAGC	2 cut(s)	1035, 1062
BpuEI	CTTGAG	3 cut(s)	92, 591, 1986
BpuMI	CCSGG	2 cut(s)	1155, 1578
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	314, 1623, 1756
BsaXI	ACNNNNNCTCC	2 cut(s)	1923, 1953
Bsc4I	CCNNNNNNNGG	7 cut(s)	566, 1742, 1791, 1835, 1880, 1919, 1967
Bse1I	ACTGG	5 cut(s)	117, 571, 752, 1008, 1961
Bse3DI	GCAATG	1 cut(s)	1862
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	3 cut(s)	726, 916, 1758
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	314, 1623, 1756
BseGI	GGATG	7 cut(s)	30, 256, 304, 776, 1309, 1683, 1800
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	7 cut(s)	566, 1742, 1791, 1835, 1880, 1919, 1967
BseMI	GCAATG	1 cut(s)	1862
BseMII	CTCAG	4 cut(s)	270, 873, 1062, 1215
BseNI	ACTGG	5 cut(s)	117, 571, 752, 1008, 1961
BseRI	GAGGAG	1 cut(s)	454
BseSI	GKGCMC	3 cut(s)	964, 1734, 1779
BseX3I	CGGCCG	1 cut(s)	538
BseXI	GCAGC	4 cut(s)	610, 799, 895, 1379
BsgI	GTGCAG	2 cut(s)	468, 2006
Bsh1285I	CGRYCG	2 cut(s)	432, 541
BshFI	GGCC	5 cut(s)	29, 540, 559, 808, 2058
BshNI	GGYRCC	2 cut(s)	268, 1729
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	2 cut(s)	432, 541
BsiHKAI	GWGCWC	3 cut(s)	964, 1333, 1750
BsiHKCI	CYCGRG	3 cut(s)	929, 1043, 1338
BsiSI	CCGG	3 cut(s)	30, 1154, 1577
BslFI	GGGAC	2 cut(s)	1418, 1872
BslI	CCNNNNNNNGG	7 cut(s)	566, 1742, 1791, 1835, 1880, 1919, 1967
BsmAI	GTCTC	1 cut(s)	1259
BsmFI	GGGAC	2 cut(s)	1418, 1872
BsmI	GAATGC	2 cut(s)	1286, 1587
BsnI	GGCC	5 cut(s)	29, 540, 559, 808, 2058
BsoBI	CYCGRG	3 cut(s)	929, 1043, 1338
Bsp1286I	GDGCHC	5 cut(s)	964, 1333, 1734, 1750, 1779
Bsp143I	GATC	5 cut(s)	429, 629, 748, 1004, 1802
Bsp1720I	GCTNAGC	2 cut(s)	1035, 1062
Bsp19I	CCATGG	1 cut(s)	1623
BspACI	CCGC	2 cut(s)	1066, 2114
BspANI	GGCC	5 cut(s)	29, 540, 559, 808, 2058
BspCNI	CTCAG	4 cut(s)	271, 872, 1063, 1214
BspDI	ATCGAT	1 cut(s)	432
BspHI	TCATGA	2 cut(s)	349, 361
BspLI	GGNNCC	7 cut(s)	270, 1050, 1176, 1351, 1600, 1731, 1888
BspMAI	CTGCAG	1 cut(s)	1909
BspPI	GGATC	3 cut(s)	743, 999, 1810
BspT107I	GGYRCC	2 cut(s)	268, 1729
BsrDI	GCAATG	1 cut(s)	1862
BsrI	ACTGG	5 cut(s)	117, 571, 752, 1008, 1961
BssECI	CCNNGG	3 cut(s)	314, 1623, 1756
BssMI	GATC	5 cut(s)	429, 629, 748, 1004, 1802
BssT1I	CCWWGG	2 cut(s)	314, 1623
Bst2UI	CCWGG	3 cut(s)	726, 916, 1758
Bst4CI	ACNGT	3 cut(s)	156, 359, 845
Bst6I	CTCTTC	1 cut(s)	1244
BstAPI	GCANNNNNTGC	1 cut(s)	1591
BstC8I	GCNNGC	7 cut(s)	557, 810, 856, 989, 1081, 1428, 1921
BstDEI	CTNAG	9 cut(s)	279, 461, 859, 1035, 1062, 1071, 1098, 1201, 1867
BstDSI	CCRYGG	1 cut(s)	1623
BstENI	CCTNNNNNAGG	1 cut(s)	1833
BstF5I	GGATG	7 cut(s)	30, 256, 304, 776, 1309, 1683, 1800
BstHHI	GCGC	2 cut(s)	1432, 1864
BstKTI	GATC	5 cut(s)	432, 632, 751, 1007, 1805
BstMAI	GTCTC	1 cut(s)	1259
BstMBI	GATC	5 cut(s)	429, 629, 748, 1004, 1802
BstMCI	CGRYCG	2 cut(s)	432, 541
BstMWI	GCNNNNNNNGC	9 cut(s)	401, 818, 1031, 1591, 1729, 1738, 1861, 1868, 2120
BstNI	CCWGG	3 cut(s)	726, 916, 1758
BstNSI	RCATGY	3 cut(s)	1083, 1244, 1594
BstSCI	CCNGG	5 cut(s)	724, 914, 1153, 1576, 1756
BstSFI	CTRYAG	2 cut(s)	1433, 1905
BstSLI	GKGCMC	3 cut(s)	964, 1734, 1779
BstV1I	GCAGC	4 cut(s)	610, 799, 895, 1379
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	3 cut(s)	748, 1004, 1802
BstYI	RGATCY	3 cut(s)	748, 1004, 1802
BstZI	CGGCCG	1 cut(s)	538
Bsu15I	ATCGAT	1 cut(s)	432
BsuI	GTATCC	2 cut(s)	627, 637
BsuRI	GGCC	5 cut(s)	29, 540, 559, 808, 2058
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	1623
BtgZI	GCGATG	2 cut(s)	579, 863
BtsCI	GGATG	7 cut(s)	30, 256, 304, 776, 1309, 1683, 1800
BtsI	GCAGTG	1 cut(s)	961
BtsIMutI	CAGTG	2 cut(s)	961, 1015
Cac8I	GCNNGC	7 cut(s)	557, 810, 856, 989, 1081, 1428, 1921
CaiI	CAGNNNCTG	1 cut(s)	1967
CciI	TCATGA	2 cut(s)	349, 361
CfoI	GCGC	2 cut(s)	1432, 1864
Cfr13I	GGNCC	6 cut(s)	1598, 1760, 1886, 1910, 1934, 2056
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	1 cut(s)	1516
Csp6I	GTAC	5 cut(s)	355, 570, 583, 1056, 1523
CviQI	GTAC	5 cut(s)	355, 570, 583, 1056, 1523
DdeI	CTNAG	9 cut(s)	279, 461, 859, 1035, 1062, 1071, 1098, 1201, 1867
DpnI	GATC	5 cut(s)	431, 631, 750, 1006, 1804
DpnII	GATC	5 cut(s)	429, 629, 748, 1004, 1802
DraI	TTTAAA	1 cut(s)	1503
DrdI	GACNNNNNNGTC	1 cut(s)	1273
DseDI	GACNNNNNNGTC	1 cut(s)	1273
EaeI	YGGCCR	3 cut(s)	27, 538, 806
EagI	CGGCCG	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	1244
EarI	CTCTTC	1 cut(s)	1244
Ecl136II	GAGCTC	1 cut(s)	1331
EclXI	CGGCCG	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	314, 1623
Eco147I	AGGCCT	1 cut(s)	559
Eco24I	GRGCYC	1 cut(s)	1333
Eco47I	GGWCC	5 cut(s)	1598, 1760, 1886, 1910, 1934
Eco52I	CGGCCG	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	1331
Eco57I	CTGAAG	2 cut(s)	1709, 1796
Eco88I	CYCGRG	3 cut(s)	929, 1043, 1338
EcoICRI	GAGCTC	1 cut(s)	1331
EcoNI	CCTNNNNNAGG	1 cut(s)	1833
EcoO109I	RGGNCCY	2 cut(s)	1886, 1934
EcoRI	GAATTC	1 cut(s)	691
EcoRII	CCWGG	3 cut(s)	724, 914, 1756
EcoT14I	CCWWGG	2 cut(s)	314, 1623
EcoT22I	ATGCAT	1 cut(s)	1596
EcoT38I	GRGCYC	1 cut(s)	1333
ErhI	CCWWGG	2 cut(s)	314, 1623
FaqI	GGGAC	2 cut(s)	1418, 1872
FauNDI	CATATG	1 cut(s)	1767
Fnu4HI	GCNGC	5 cut(s)	599, 813, 909, 1368, 2115
FokI	GGATG	7 cut(s)	37, 263, 311, 763, 1316, 1690, 1807
FriOI	GRGCYC	1 cut(s)	1333
Fsp4HI	GCNGC	5 cut(s)	599, 813, 909, 1368, 2115
GlaI	GCGC	2 cut(s)	1431, 1863
GluI	GCNGC	5 cut(s)	599, 813, 909, 1368, 2115
GsuI	CTGGAG	1 cut(s)	1944
HaeIII	GGCC	5 cut(s)	29, 540, 559, 808, 2058
HapII	CCGG	3 cut(s)	30, 1154, 1577
HgaI	GACGC	1 cut(s)	1516
HhaI	GCGC	2 cut(s)	1432, 1864
Hin6I	GCGC	2 cut(s)	1430, 1862
HinP1I	GCGC	2 cut(s)	1430, 1862
HindIII	AAGCTT	1 cut(s)	1470
HpaII	CCGG	3 cut(s)	30, 1154, 1577
HphI	GGTGA	4 cut(s)	665, 1172, 1566, 1611
Hpy166II	GTNNAC	3 cut(s)	962, 1465, 1763
Hpy8I	GTNNAC	3 cut(s)	962, 1465, 1763
HpyAV	CCTTC	5 cut(s)	27, 961, 1395, 1795, 1820
HpyCH4III	ACNGT	3 cut(s)	156, 359, 845
HpyCH4IV	ACGT	2 cut(s)	308, 1296
HpyF10VI	GCNNNNNNNGC	9 cut(s)	401, 818, 1031, 1591, 1729, 1738, 1861, 1868, 2120
HpyF3I	CTNAG	9 cut(s)	279, 461, 859, 1035, 1062, 1071, 1098, 1201, 1867
HpySE526I	ACGT	2 cut(s)	308, 1296
HspAI	GCGC	2 cut(s)	1430, 1862
Kzo9I	GATC	5 cut(s)	429, 629, 748, 1004, 1802
LmnI	GCTCC	5 cut(s)	1328, 1541, 1745, 1876, 1963
Lsp1109I	GCAGC	4 cut(s)	610, 799, 895, 1379
LweI	GCATC	9 cut(s)	93, 484, 620, 1413, 1467, 1712, 1842, 1998, 2110
MaeII	ACGT	2 cut(s)	308, 1296
MaeIII	GTNAC	1 cut(s)	1712
MalI	GATC	5 cut(s)	431, 631, 750, 1006, 1804
MboI	GATC	5 cut(s)	429, 629, 748, 1004, 1802
MboII	GAAGA	9 cut(s)	142, 223, 267, 503, 1100, 1182, 1261, 1432, 1698
MflI	RGATCY	3 cut(s)	748, 1004, 1802
MhlI	GDGCHC	5 cut(s)	964, 1333, 1734, 1750, 1779
MlyI	GAGTC	3 cut(s)	941, 980, 1283
MmeI	TCCRAC	2 cut(s)	1612, 2066
Mph1103I	ATGCAT	1 cut(s)	1596
MseI	TTAA	2 cut(s)	533, 1502
MslI	CAYNNNNRTG	4 cut(s)	492, 678, 1290, 1593
MspA1I	CMGCKG	2 cut(s)	812, 908
MspI	CCGG	3 cut(s)	30, 1154, 1577
MspR9I	CCNGG	5 cut(s)	726, 916, 1155, 1578, 1758
Mva1269I	GAATGC	2 cut(s)	1286, 1587
MvaI	CCWGG	3 cut(s)	726, 916, 1758
MwoI	GCNNNNNNNGC	9 cut(s)	401, 818, 1031, 1591, 1729, 1738, 1861, 1868, 2120
NciI	CCSGG	2 cut(s)	1155, 1578
NcoI	CCATGG	1 cut(s)	1623
NdeI	CATATG	1 cut(s)	1767
NdeII	GATC	5 cut(s)	429, 629, 748, 1004, 1802
NlaIV	GGNNCC	7 cut(s)	270, 1050, 1176, 1351, 1600, 1731, 1888
NsiI	ATGCAT	1 cut(s)	1596
NspI	RCATGY	3 cut(s)	1083, 1244, 1594
PaeI	GCATGC	1 cut(s)	1083
PaeR7I	CTCGAG	1 cut(s)	1043
PagI	TCATGA	2 cut(s)	349, 361
PceI	AGGCCT	1 cut(s)	559
PctI	GAATGC	2 cut(s)	1286, 1587
PfeI	GAWTC	8 cut(s)	41, 133, 239, 467, 947, 1307, 1410, 1952
PflMI	CCANNNNNTGG	1 cut(s)	1967
PfoI	TCCNGGA	1 cut(s)	724
PkrI	GCNGC	5 cut(s)	600, 814, 910, 1369, 2116
Ple19I	CGATCG	1 cut(s)	432
PleI	GAGTC	3 cut(s)	940, 979, 1282
PpsI	GAGTC	3 cut(s)	940, 979, 1282
PpuMI	RGGWCCY	2 cut(s)	1886, 1934
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	1333
Psp5II	RGGWCCY	2 cut(s)	1886, 1934
Psp6I	CCWGG	3 cut(s)	724, 914, 1756
PspGI	CCWGG	3 cut(s)	724, 914, 1756
PspN4I	GGNNCC	7 cut(s)	270, 1050, 1176, 1351, 1600, 1731, 1888
PspPI	GGNCC	6 cut(s)	1598, 1760, 1886, 1910, 1934, 2056
PspPPI	RGGWCCY	2 cut(s)	1886, 1934
PstI	CTGCAG	1 cut(s)	1909
PstNI	CAGNNNCTG	1 cut(s)	1967
PsuI	RGATCY	3 cut(s)	748, 1004, 1802
PvuI	CGATCG	1 cut(s)	432
PvuII	CAGCTG	2 cut(s)	812, 908
RsaI	GTAC	5 cut(s)	356, 571, 584, 1057, 1524
RsaNI	GTAC	5 cut(s)	355, 570, 583, 1056, 1523
RseI	CAYNNNNRTG	4 cut(s)	492, 678, 1290, 1593
SacI	GAGCTC	1 cut(s)	1333
SaqAI	TTAA	2 cut(s)	533, 1502
SatI	GCNGC	5 cut(s)	599, 813, 909, 1368, 2115
Sau3AI	GATC	5 cut(s)	429, 629, 748, 1004, 1802
Sau96I	GGNCC	6 cut(s)	1598, 1760, 1886, 1910, 1934, 2056
ScaI	AGTACT	1 cut(s)	356
SchI	GAGTC	3 cut(s)	941, 980, 1283
ScrFI	CCNGG	5 cut(s)	726, 916, 1155, 1578, 1758
SduI	GDGCHC	5 cut(s)	964, 1333, 1734, 1750, 1779
SfaNI	GCATC	9 cut(s)	93, 484, 620, 1413, 1467, 1712, 1842, 1998, 2110
SfcI	CTRYAG	2 cut(s)	1433, 1905
Sfr274I	CTCGAG	1 cut(s)	1043
SinI	GGWCC	5 cut(s)	1598, 1760, 1886, 1910, 1934
SlaI	CTCGAG	1 cut(s)	1043
SmiMI	CAYNNNNRTG	4 cut(s)	492, 678, 1290, 1593
SmlI	CTYRAG	4 cut(s)	71, 606, 1043, 2001
SmoI	CTYRAG	4 cut(s)	71, 606, 1043, 2001
SpeI	ACTAGT	2 cut(s)	572, 662
SphI	GCATGC	1 cut(s)	1083
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	2 cut(s)	1066, 2114
SstI	GAGCTC	1 cut(s)	1333
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	5 cut(s)	724, 914, 1153, 1576, 1756
StyI	CCWWGG	2 cut(s)	314, 1623
TaaI	ACNGT	3 cut(s)	156, 359, 845
TaiI	ACGT	2 cut(s)	311, 1299
TaqI	TCGA	6 cut(s)	178, 428, 432, 1044, 1475, 1482
TatI	WGTACW	4 cut(s)	354, 582, 1055, 1522
TauI	GCSGC	1 cut(s)	2117
TfiI	GAWTC	8 cut(s)	41, 133, 239, 467, 947, 1307, 1410, 1952
Tru1I	TTAA	2 cut(s)	533, 1502
Tru9I	TTAA	2 cut(s)	533, 1502
TscAI	CASTG	2 cut(s)	961, 1015
TseI	GCWGC	4 cut(s)	598, 812, 908, 1367
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	961, 1015
Van91I	CCANNNNNTGG	1 cut(s)	1967
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	5 cut(s)	1598, 1760, 1886, 1910, 1934
XagI	CCTNNNNNAGG	1 cut(s)	1833
XapI	RAATTY	5 cut(s)	221, 255, 377, 691, 976
XceI	RCATGY	3 cut(s)	1083, 1244, 1594
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XhoI	CTCGAG	1 cut(s)	1043
ZrmI	AGTACT	1 cut(s)	356
Zsp2I	ATGCAT	1 cut(s)	1596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.