Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002652

Physical Location & Seq

Genomic Coordinates Forward (+)

2424748 .. 2426732

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0030900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCTGTCCAAATTCCTAGAGTGAAACTCGGGAGTGAGGGATTTGAGGTTTCCAAGTTGGGACTTGGTTGTTTGGGACTTAGTGGATACTACAATGCTCCACTAGCTGAAGAGGCTGGCATATCAATAATCAAGCATGCATTCGATAATGGAATCACGTTCTTTGATACATCAGATATTTATGGACCAGAAACTAATGAAGTTTTGATCGGAAAGGCATTGAAGCAGCTGCCTCGAGATAAGGTTCAGGTTGCTACAAAGTTTGGTATTGTAAATATCAAGAAACCACAAGTTACACTTAATAGCAGTCCTGAGTATATACGCTCCTGCTGCGAGGCTAGCCTGAAGCGCCTTGATGTGGAGTACATTGATCTTTACTATCAGCACCGTGTAGACCCATCAGTACCAATAGAGGATACCATGGAGGAATTAAAGAAGTTGGTGAAGGAGGGGAAGATAAAGTACATCGGACTATCCGAAGCCAGCCCAGAAACAATAAAGAGGGCACATGCAGTTCATCCCATTACAGCTGTACAAATAGAGTGGTCTCTTTGGACTCGCGACATTGAGGAAGAAATCGTCCCACTTTGCAGGGAACTTGGAATCGGGATAGTGCCATATAGCCCTCTTGGTCAAGGATTTTTCGGTGGCAGGGCAGTTGTGGAAGCTATACCTGCAAAGAGTCATTTGGACTGGCTTCCTCGCTTTCAAGGGGAGAACTTGGAGAAAAACAAAGACCTTTATGCTGAAACACAGAGGTTGGCTGAAAAGCATGGATGTTCCCCTGCACAACTTGCGCTTTCTTGGGTTCTTACTCAAGGCAAAGATGTTGTACCTATCCCTGGGACTACTAAGATAAAGAATTTGGATGATAATATTGGTTCCTTGAGAGTGAAACTCACTAAAGAAGACATAGAAGAGATTTCTGATAAAATATCTATCAACACAGTGGCTGGGAATAATGCACCTGATGCTTTTTTTCGCTGCTCATGGAGGTTTGCAAATACACCACCAGCAAAAGATGGCAAAATACCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009704 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009889 GO:0009893 GO:0009987 GO:0010017 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 ko04712 map04075 map04712

Pfam Domains

Protein Families

HLH

Protein Analysis

346

Amino Acids

38.3

Weight (kDa)

5.97

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	19 - 311	6.3e-80	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530 AT1G09530
fragaria_vesca	FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610 FvH4_6g08610
malus_domestica	MD04G1185100.v1.1 MD12G1198900.v1.1 MD12G1199000.v1.1
prunus_persica	Prupe.6G303500_v2.0.a1
pyrus_communis	pycom04g16430 pycom12g18530
rosa_chinensis	RchiOBHm_Chr3g0458701
rosa_laevigata	RLG00000025141
rosa_multiflora	Rmu_co8042810.1_g000001 Rmu_sc0001634.1_g000012
rosa_roxburghii	Rroxscaffold_6G00420860
rosa_rugosa	Rorug03G0030900 Rorug03G0031000 Rorug03G0031100 Rorug03G0031200.1 Rorug03G0031300
rosa_samantha	Rh3AG088900 Rh3BG091700 Rh3CG092100 Rh3DG092700
rosa_wichuraiana	Rw3G007600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	1 cut(s)	561
AcsI	RAATTY	2 cut(s)	12, 862
AcuI	CTGAAG	2 cut(s)	129, 365
AfaI	GTAC	5 cut(s)	365, 405, 464, 534, 834
AfiI	CCNNNNNNNGG	2 cut(s)	358, 842
AgsI	TTSAA	2 cut(s)	223, 710
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	4 cut(s)	107, 229, 530, 668
AluI	AGCT	4 cut(s)	107, 229, 530, 668
Alw26I	GTCTC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	953
Ama87I	CYCGRG	2 cut(s)	29, 234
ApeKI	GCWGC	4 cut(s)	226, 229, 330, 984
ApoI	RAATTY	2 cut(s)	12, 862
AspLEI	GCGC	2 cut(s)	351, 799
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	338
AvaI	CYCGRG	2 cut(s)	29, 234
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	508
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbsI	GAAGAC	1 cut(s)	915
BbvI	GCAGC	4 cut(s)	216, 238, 317, 971
BccI	CCATC	2 cut(s)	406, 1016
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	1 cut(s)	843
BciVI	GTATCC	2 cut(s)	80, 409
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	3 cut(s)	18, 104, 339
BfoI	RGCGCY	1 cut(s)	352
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	2 cut(s)	80, 409
BisI	GCNGC	4 cut(s)	227, 230, 331, 985
BlsI	GCNGC	4 cut(s)	228, 231, 332, 986
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	29, 234
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	1 cut(s)	961
BmtI	GCTAGC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	915
BplI	GAGNNNNNCTC	4 cut(s)	12, 44, 882, 914
BpuEI	CTTGAG	2 cut(s)	801, 907
BsaI	GGTCTC	1 cut(s)	552
BsaJI	CCNNGG	3 cut(s)	420, 841, 842
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 842
Bse1I	ACTGG	1 cut(s)	698
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	420, 841, 842
BseGI	GGATG	3 cut(s)	517, 782, 874
BseLI	CCNNNNNNNGG	2 cut(s)	358, 842
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	698
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	4 cut(s)	216, 238, 317, 971
BseYI	CCCAGC	1 cut(s)	953
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	561
BsiHKCI	CYCGRG	2 cut(s)	29, 234
BslFI	GGGAC	4 cut(s)	75, 90, 566, 859
BslI	CCNNNNNNNGG	2 cut(s)	358, 842
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	4 cut(s)	75, 90, 566, 859
BsmI	GAATGC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	552
BsoBI	CYCGRG	2 cut(s)	29, 234
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	2 cut(s)	207, 370
Bsp19I	CCATGG	1 cut(s)	420
Bsp68I	TCGCGA	1 cut(s)	561
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	883
BspMI	ACCTGC	1 cut(s)	682
BspOI	GCTAGC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	698
BssECI	CCNNGG	3 cut(s)	420, 841, 842
BssMI	GATC	2 cut(s)	207, 370
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	2 cut(s)	389, 949
Bst6I	CTCTTC	2 cut(s)	105, 912
BstAPI	GCANNNNNTGC	2 cut(s)	794, 971
BstAUI	TGTACA	1 cut(s)	532
BstC8I	GCNNGC	4 cut(s)	118, 138, 340, 484
BstDEI	CTNAG	3 cut(s)	80, 312, 852
BstDSI	CCRYGG	1 cut(s)	420
BstF5I	GGATG	3 cut(s)	517, 782, 874
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	2 cut(s)	351, 799
BstKTI	GATC	2 cut(s)	210, 373
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	2 cut(s)	207, 370
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 113, 330, 339, 348, 674, 794, 971
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	2 cut(s)	140, 512
BstSCI	CCNGG	1 cut(s)	841
BstSLI	GKGCMC	1 cut(s)	508
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	4 cut(s)	216, 238, 317, 971
BstV2I	GAAGAC	1 cut(s)	915
BsuI	GTATCC	2 cut(s)	80, 409
BtgI	CCRYGG	1 cut(s)	420
BtsCI	GGATG	3 cut(s)	517, 782, 874
BtsIMutI	CAGTG	1 cut(s)	954
BtuMI	TCGCGA	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	4 cut(s)	118, 138, 340, 484
CaiI	CAGNNNCTG	1 cut(s)	953
CfoI	GCGC	2 cut(s)	351, 799
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	5 cut(s)	364, 404, 463, 533, 833
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviAII	CATG	5 cut(s)	137, 421, 509, 773, 990
CviQI	GTAC	5 cut(s)	364, 404, 463, 533, 833
DdeI	CTNAG	3 cut(s)	80, 312, 852
DpnI	GATC	2 cut(s)	209, 372
DpnII	GATC	2 cut(s)	207, 370
Eam1104I	CTCTTC	2 cut(s)	105, 912
EarI	CTCTTC	2 cut(s)	105, 912
Eco130I	CCWWGG	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	2 cut(s)	129, 365
Eco88I	CYCGRG	2 cut(s)	29, 234
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	420
FaeI	CATG	5 cut(s)	140, 424, 512, 776, 993
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	4 cut(s)	75, 90, 566, 859
FatI	CATG	5 cut(s)	136, 420, 508, 772, 989
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	227, 230, 331, 985
FokI	GGATG	3 cut(s)	504, 789, 881
Fsp4HI	GCNGC	4 cut(s)	227, 230, 331, 985
FspBI	CTAG	3 cut(s)	18, 104, 339
GlaI	GCGC	2 cut(s)	350, 798
GluI	GCNGC	4 cut(s)	227, 230, 331, 985
GsaI	CCCAGC	1 cut(s)	957
HaeII	RGCGCY	1 cut(s)	352
HhaI	GCGC	2 cut(s)	351, 799
Hin1II	CATG	5 cut(s)	140, 424, 512, 776, 993
Hin6I	GCGC	2 cut(s)	349, 797
HinP1I	GCGC	2 cut(s)	349, 797
HinfI	GANTC	4 cut(s)	153, 556, 603, 682
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	5 cut(s)	175, 212, 470, 478, 928
Hpy188III	TCNNGA	6 cut(s)	31, 236, 280, 311, 560, 607
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	2 cut(s)	389, 949
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	7 cut(s)	140, 512, 591, 677, 788, 965, 1001
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 113, 330, 339, 348, 674, 794, 971
HpyF3I	CTNAG	3 cut(s)	80, 312, 852
HpySE526I	ACGT	1 cut(s)	158
Hsp92II	CATG	5 cut(s)	140, 424, 512, 776, 993
HspAI	GCGC	2 cut(s)	349, 797
Kzo9I	GATC	2 cut(s)	207, 370
LmnI	GCTCC	2 cut(s)	103, 329
Lsp1109I	GCAGC	4 cut(s)	216, 238, 317, 971
LweI	GCATC	1 cut(s)	961
MaeI	CTAG	3 cut(s)	18, 104, 339
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	209, 372
MboI	GATC	2 cut(s)	207, 370
MboII	GAAGA	5 cut(s)	122, 466, 584, 920, 929
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	3 cut(s)	12, 428, 862
MlyI	GAGTC	2 cut(s)	550, 691
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	300, 431, 1039
MspA1I	CMGCKG	2 cut(s)	229, 530
MspR9I	CCNGG	1 cut(s)	843
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	8 cut(s)	104, 113, 330, 339, 348, 674, 794, 971
NcoI	CCATGG	1 cut(s)	420
NdeII	GATC	2 cut(s)	207, 370
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	5 cut(s)	140, 424, 512, 776, 993
NlaIV	GGNNCC	1 cut(s)	883
NruI	TCGCGA	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	2 cut(s)	140, 512
PaeI	GCATGC	1 cut(s)	140
PaeR7I	CTCGAG	1 cut(s)	234
PasI	CCCWGGG	1 cut(s)	842
PcsI	WCGNNNNNNNCGW	1 cut(s)	474
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	153, 603
PkrI	GCNGC	4 cut(s)	228, 231, 332, 986
PleI	GAGTC	2 cut(s)	550, 690
PpsI	GAGTC	2 cut(s)	550, 690
Psp6I	CCWGG	1 cut(s)	841
PspFI	CCCAGC	1 cut(s)	953
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	1 cut(s)	185
PstNI	CAGNNNCTG	1 cut(s)	953
PvuII	CAGCTG	2 cut(s)	229, 530
RruI	TCGCGA	1 cut(s)	561
RsaI	GTAC	5 cut(s)	365, 405, 464, 534, 834
RsaNI	GTAC	5 cut(s)	364, 404, 463, 533, 833
SaqAI	TTAA	3 cut(s)	300, 431, 1039
SatI	GCNGC	4 cut(s)	227, 230, 331, 985
Sau3AI	GATC	2 cut(s)	207, 370
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	550, 691
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	508
SfaNI	GCATC	1 cut(s)	961
Sfr274I	CTCGAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	234, 816, 886
SmoI	CTYRAG	3 cut(s)	234, 816, 886
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	3 cut(s)	12, 428, 862
SspI	AATATT	1 cut(s)	877
SspMI	CTAG	3 cut(s)	18, 104, 339
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	420
TaaI	ACNGT	2 cut(s)	389, 949
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	2 cut(s)	144, 235
TasI	AATT	3 cut(s)	12, 428, 862
TatI	WGTACW	3 cut(s)	363, 462, 532
TfiI	GAWTC	2 cut(s)	153, 603
Tru1I	TTAA	3 cut(s)	300, 431, 1039
Tru9I	TTAA	3 cut(s)	300, 431, 1039
TscAI	CASTG	1 cut(s)	954
TseI	GCWGC	4 cut(s)	226, 229, 330, 984
TspDTI	ATGAA	2 cut(s)	213, 506
TspRI	CASTG	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	12, 862
XceI	RCATGY	2 cut(s)	140, 512
XhoI	CTCGAG	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	3 cut(s)	18, 104, 339
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.