Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005377

Physical Location & Seq

Genomic Coordinates Reverse (-)

3262222 .. 3263642

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09995.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGATGATCGAGCTAGATTTTGTTCCCCAAATCGATTCTTCTAACCAAATCGACGAGAGGTGCTTGGACTTGCAAAAGAAGAAGATATCTCAAGTCTCTAAAAAGAAGTTGGAGGATATACACTGCAGCATAGAGAGTTATCTGGGAAGATTCCAGAATCTCTTGAGAGCTGGAAACATGAGATATATCCAAATTATGTTGATTCTCACCCGAGCTTTCCTCAAACCTCTTGCTAGTGATAGGAATCTGAAGGAAAGCAATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000785 GO:0000790 GO:0000819 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007064 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0034085 GO:0034641 GO:0034645 GO:0035861 GO:0036297 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045005 GO:0046483 GO:0048285 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0090734 GO:0098813 GO:0140014 GO:0140097 GO:1901360 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

88

Amino Acids

10.3

Weight (kDa)

9.03

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G79890 AT1G79890 AT1G79890 AT1G79890
fragaria_vesca	FvH4_6g31470 FvH4_6g31470 FvH4_6g31470
malus_domestica	MD09G1210800.v1.1
prunus_persica	Prupe.3G069100_v2.0.a1 Prupe.3G069100_v2.0.a1
pyrus_communis	pycom09g12830 pycom09g12840
rosa_chinensis	RchiOBHm_Chr2g0138331
rosa_laevigata	RLG00000019734 RLG00000019735
rosa_multiflora	Rmu_sc0002475.1_g000005 Rmu_sc0006186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106330
rosa_rugosa	Rorug02G0351300
rosa_samantha	Rh2AG399400 Rh2BG408700 Rh2CG385900 Rh2DG419300
rosa_wichuraiana	Rw2G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	13, 170, 215
AluI	AGCT	3 cut(s)	13, 170, 215
Alw26I	GTCTC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	14, 234
BfmI	CTRYAG	1 cut(s)	124
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	210
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpuEI	CTTGAG	2 cut(s)	75, 184
Bsa29I	ATCGAT	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	33
BseJI	GATNNNNATC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	6
BspDI	ATCGAT	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	128
BssMI	GATC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	6
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	138
Bsu15I	ATCGAT	1 cut(s)	33
BsuTUI	ATCGAT	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
ClaI	ATCGAT	1 cut(s)	33
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	3 cut(s)	13, 170, 215
CviKI_1	RGCY	3 cut(s)	13, 170, 215
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	87
FaeI	CATG	1 cut(s)	181
FaiI	YATR	5 cut(s)	119, 131, 179, 186, 197
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
FspBI	CTAG	2 cut(s)	14, 234
GluI	GCNGC	1 cut(s)	127
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	5 cut(s)	35, 150, 157, 202, 244
HphI	GGTGA	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	249, 266
Hpy188III	TCNNGA	2 cut(s)	154, 163
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	73, 126
Hsp92II	CATG	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	6
LpnPI	CCDG	3 cut(s)	128, 156, 167
Lsp1109I	GCAGC	1 cut(s)	138
MaeI	CTAG	2 cut(s)	14, 234
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	4 cut(s)	30, 91, 94, 159
MluCI	AATT	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	51, 106, 230, 237
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	181
PfeI	GAWTC	5 cut(s)	35, 150, 157, 202, 244
PkrI	GCNGC	1 cut(s)	128
PstI	CTGCAG	1 cut(s)	128
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	6
SetI	ASST	5 cut(s)	15, 62, 172, 217, 229
SfcI	CTRYAG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	90, 163
SmoI	CTYRAG	2 cut(s)	90, 163
Sse9I	AATT	1 cut(s)	192
SspMI	CTAG	2 cut(s)	14, 234
TaqI	TCGA	3 cut(s)	9, 33, 51
TasI	AATT	1 cut(s)	192
TfiI	GAWTC	5 cut(s)	35, 150, 157, 202, 244
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	1 cut(s)	126
TspRI	CASTG	1 cut(s)	128
XspI	CTAG	2 cut(s)	14, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.