Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005377

Physical Location & Seq

Genomic Coordinates Forward (+)

29898514 .. 29903455

Gene Structure 4942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGGAAGAAGAAAACCAAAATGGGGAGGCGCCCCCAAAATTCCCAGCATTTCCTTACAAACCCTACGCCATCCAGATCGACTTCATGAACGCCCTTTATCACTCTCTCAACCAAGGCGGCCTCTCCATGCTCGAAAGCCCCACCGGGACTGGTAAAACTCTAAGTATCATTTGTAGTGCTTTGCAATGGGTGGTCGATAAGAGGGAGCAAGAGAAATTGAAAAAAGAGGTTGAAACTGACAATAGTAGTGCTAAAGGTGGTGAATTGGGTTCGGATGATGAACCTGATTGGATGAGGAATGCTGTTATTAACAAAGACATTCAGGGTGAGGAGAAGAAGTCTGGGAAGAAGGATAAATTTGGGAGTGGATTTCGCAGGGCTGATAGGAGAAAGAACCATGCAAATTGTACTGATTTGTTCTCTCGGCGTGTTGAGGAAGAGTCTTGCACAAAGAAGGAGGGAAAGAGTTTGCAAGTGAGCAGTGATGCTGTGGATTTGAATGATGAGGATGAGTTTTTGCTGGAAGAACATGAGAGTGATGAGGAAGGTGTTCCGTGTGCTGGGAAGTCAAAGAGGAAGGTTGCTGGGGTTTCTCTTAGTTCGTCAAGTGACGAGGAAGATGGAGCAGATGGGTCTAGCGATGATGAAGATGAGGGGGAAGAGAAGTTGAAGGTTTATTTTTGTAGTCGGACACATTCACAGCTTTCACAGTTCATAAAGGAGTTGAGAAAGACAGTCTTTGCTAATGAGATGAAGGTGGTTTGTTTGGGCTCAAGGAAGAATTTCTGCATTAACCAAGAGGTATTAAAACTTGGAAACTCAAATCGCATCAATGAACGCTGTTTGGAACTTCAGAAAAACAAGAATAAGGAGTTTTCTAAAATCAAGAGCTTAGGTGCAGGAGGAAGGATTCGCAGGAACAAGGCTTCTTGTGGATGCCCAATGCTTAGGAAACATAAACAACAGAAAGAATTCAAGAGCATGATGTCTCAACTCGGTGCCTTGGATATTGAAGATCTTGTTCATCAGGGAAGGAATATGAGGTGTTGTCCATATTATGGCTCCCGAAGCATGGTTCCTGCTGCTGATCTGGTGGTTCTACCATATCAATCTCTTCTTTCAAAAGCATCCCGCGAATCACTTGGTCTGAATCTAAAGAACAATATTATTATCATAGATGAGGCCCACAATCTAGCTGACTCCTTAATCAGCATGTATGACTCAAAAATCACTTTGTCACAGCTGGAAGATGTGCAGTGCAATATTGAAAAGTACTTTGCAAGGTTTAGCAATCTCTTGGGACCTGGAAACCGCAGATACATCCAAACGCTCACAGTGCTCACTCGGGCTTTTCTTCGAGTTTTGCTCAATGAGGACACCGGTTATGAAGGTTCTTGCCATGATACTGAAAACTCTTCTGCAGAAAATGGCGTGCGCAATTCCTCTATGGCCATCAATGATTTTTTATTTTCACTCAATATAGACAACATCAACTTGGTTAAATTGCTTGAGTATATAAAGGAAAGCAAAGTCATGCACAAGATCAGTGGATATGGGGATAAACTAGCCAGCTTTGATAAAAGCTTGCCACTTGATGGTAGTGAAGAAAGAAGCACTCTGTCCAGTTTCCAGGCATTAGCTGATTTTTTGCTATCACTGACAAACAAAGATGGTGATGGGAGGATTATCATTTCACGGACTAAACCAACATGCTCTGGGCAGCAAGGGGGATACATCAAATATGTTATGCTCACAGGGGAGAAGATATTTTCTGAGATTGTGGAACAGGCACATGCTGTGCTACTGGCTGGGGGAACTCTGCAACCCATAGAAGAAACGAGGGAGCGGCTTTTTCCTTGGTTACCACCGAACCAGTTGCATTTCTTTTCATGTAGCCACATTGTTCCTCCAGAGAGCATTTTGCCAGTTGCAGTTGCTCGTGGCCCTTCTGGTCAGCCTTTCGATTTTAGTTACAGCTCTAGAAGGTCATCAATCATGATACAGGAGCTAGGGCGTTTGGTTTGCAATTTGGTGACGGTGGTTCCTGAAGGAATCGTTGTCTTCTTCTCTTCATTTGATTATGAAGGAGAGGTGTACAATGCATGGGAGGCTTCAGGCATCCTCGATAGAATTAAGAAGAAGAAGCGTCTATTTAGAGAGCCTAGGAAGAATACATATGTAGAATCTGTTCTGAAGGAGTACAAGGAAACAATTGATAGCTTGTCTTCAGGAGAAAGGAAAGAAAATCCTTCTCAGAGTGGTGCCATACTTCTTGCTGTTGTTGGTGGTAAGATATCGGAGGGCATCAACTTGAGTGATGGGATGGGTCGGTGTATAGTCATGGTTGGACTGCCATATGCGAGCCCTTCTGATGTTGAGCTGATGGAGAGGGTGAAGCACATTGAAGGATTGGGAAATTCAAATTCAATTAAGATGACCAATTCTTTACGTGGTAATGAACTTTACAGTGGAGAAGCACATGAAGGATTTGATATCCTCCGAAGTTGCAGACACAGAGGAAAAGAATATTATGAGAATCTTTGCATGAAAGCTGTAAACCAGTCCATCGGTAGAGCAATCCGGCATATAAATGATTATGCAGCAATTTTACTAGTTGATACACGCTATGCAGCTGATTCCTCAACACGGAATTTCAGACATCCAACTAGCAAGCTCCCACAGTGGATAAAGGATCGTTTCGTTGCTTCAGGTGATTACGGTCAACTTCATAGGATGTTGCATCAGTTTTTTAGTTATAACAAAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

923

Amino Acids

103.57

Weight (kDa)

6.85

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	227 - 415	3.4e-53	DEAD_2
Helicase_C_2	PF13307	675 - 886	6.6e-42	Helicase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G09995 AT1G79890 AT1G79890 AT1G79890 AT1G79890
fragaria_vesca	FvH4_6g31470 FvH4_6g31470 FvH4_6g31470
malus_domestica	MD09G1210800.v1.1
prunus_persica	Prupe.3G069100_v2.0.a1 Prupe.3G069100_v2.0.a1
pyrus_communis	pycom09g12830 pycom09g12840
rosa_chinensis	RchiOBHm_Chr2g0138331
rosa_laevigata	RLG00000019734 RLG00000019735
rosa_multiflora	Rmu_sc0002475.1_g000005 Rmu_sc0006186.1_g000002
rosa_roxburghii	Rroxscaffold_2G00106330
rosa_rugosa	Rorug02G0351300
rosa_samantha	Rh2AG399400 Rh2BG408700 Rh2CG385900 Rh2DG419300
rosa_wichuraiana	Rw2G032510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2757
Acc16I	TGCGCA	1 cut(s)	1436
AccB1I	GGYRCC	3 cut(s)	28, 998, 2261
AccB7I	CCANNNNNTGG	2 cut(s)	1058, 1595
AccBSI	CCGCTC	1 cut(s)	1846
AccII	CGCG	1 cut(s)	1134
AciI	CCGC	4 cut(s)	117, 1132, 1312, 1846
AclWI	GGATC	1 cut(s)	2700
AcoI	YGGCCR	1 cut(s)	1449
AcsI	RAATTY	7 cut(s)	38, 356, 781, 971, 2416, 2422, 2650
AcuI	CTGAAG	6 cut(s)	836, 2067, 2097, 2211, 2213, 2691
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	4 cut(s)	409, 1274, 2096, 2201
AfiI	CCNNNNNNNGG	6 cut(s)	22, 560, 1058, 1072, 1595, 2646
AgeI	ACCGGT	1 cut(s)	1379
AhlI	ACTAGT	1 cut(s)	2611
AjnI	CCWGG	2 cut(s)	1303, 1629
Alw21I	GWGCWC	1 cut(s)	1341
Alw26I	GTCTC	1 cut(s)	993
AlwI	GGATC	1 cut(s)	2700
Ama87I	CYCGRG	1 cut(s)	1344
AoxI	GGCC	4 cut(s)	118, 1182, 1449, 1942
ApeKI	GCWGC	4 cut(s)	1082, 1720, 2600, 2630
ApoI	RAATTY	7 cut(s)	38, 356, 781, 971, 2416, 2422, 2650
AsiGI	ACCGGT	1 cut(s)	1379
Asp700I	GAANNNNTTC	4 cut(s)	549, 782, 971, 2187
AspA2I	CCTAGG	1 cut(s)	2162
AspLEI	GCGC	2 cut(s)	31, 1437
AspS9I	GGNCC	3 cut(s)	1183, 1301, 1943
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	6 cut(s)	272, 338, 1685, 2044, 2404, 2723
AvaI	CYCGRG	1 cut(s)	1344
AvaII	GGWCC	1 cut(s)	1301
AvrII	CCTAGG	1 cut(s)	2162
BalI	TGGCCA	1 cut(s)	1451
BanI	GGYRCC	3 cut(s)	28, 998, 2261
BanII	GRGCYC	2 cut(s)	773, 2366
BauI	CACGAG	1 cut(s)	1938
BbsI	GAAGAC	2 cut(s)	2053, 2217
Bbv12I	GWGCWC	1 cut(s)	1341
BbvI	GCAGC	4 cut(s)	1069, 1732, 2612, 2642
BcgI	CGANNNNNNTGC	2 cut(s)	1858, 1892
BciT130I	CCWGG	2 cut(s)	1305, 1631
BciVI	GTATCC	1 cut(s)	1724
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	993
BcuI	ACTAGT	1 cut(s)	2611
BfaI	CTAG	8 cut(s)	636, 1193, 1565, 1980, 2009, 2163, 2612, 2667
BfmI	CTRYAG	1 cut(s)	1419
BfoI	RGCGCY	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	1724
BglII	AGATCT	1 cut(s)	1015
BisI	GCNGC	6 cut(s)	118, 1083, 1721, 1847, 2601, 2631
BlnI	CCTAGG	1 cut(s)	2162
BlsI	GCNGC	6 cut(s)	119, 1084, 1722, 1848, 2602, 2632
BmcAI	AGTACT	1 cut(s)	1274
Bme1390I	CCNGG	3 cut(s)	145, 1305, 1631
Bme18I	GGWCC	1 cut(s)	1301
BmeT110I	CYCGRG	1 cut(s)	1344
BmgT120I	GGNCC	3 cut(s)	1183, 1301, 1943
BmiI	GGNNCC	7 cut(s)	30, 1000, 1063, 1077, 1302, 2043, 2263
BmrFI	CCNGG	3 cut(s)	145, 1305, 1631
BmsI	GCATC	7 cut(s)	475, 837, 926, 1136, 2127, 2313, 2749
BpiI	GAAGAC	2 cut(s)	2053, 2217
BplI	GAGNNNNNCTC	2 cut(s)	1350, 1382
BpmI	CTGGAG	1 cut(s)	1893
Bpu10I	CCTNAGC	2 cut(s)	892, 947
BpuEI	CTTGAG	3 cut(s)	757, 1529, 2332
BpuMI	CCSGG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	2450
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	4 cut(s)	112, 1002, 1856, 2162
BsaWI	WCCGGW	1 cut(s)	1379
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 560, 1058, 1072, 1595, 2646
Bse118I	RCCGGY	1 cut(s)	1379
Bse1I	ACTGG	6 cut(s)	154, 1623, 1809, 1873, 1925, 2560
Bse3DI	GCAATG	1 cut(s)	191
BseBI	CCWGG	2 cut(s)	1305, 1631
BseDI	CCNNGG	4 cut(s)	112, 1002, 1856, 2162
BseLI	CCNNNNNNNGG	6 cut(s)	22, 560, 1058, 1072, 1595, 2646
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	1764, 2267
BseNI	ACTGG	6 cut(s)	154, 1623, 1809, 1873, 1925, 2560
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	4 cut(s)	1069, 1732, 2612, 2642
BseYI	CCCAGC	4 cut(s)	43, 560, 584, 1808
BsgI	GTGCAG	2 cut(s)	918, 1274
Bsh1236I	CGCG	1 cut(s)	1134
BshFI	GGCC	4 cut(s)	120, 1184, 1451, 1944
BshNI	GGYRCC	3 cut(s)	28, 998, 2261
BshTI	ACCGGT	1 cut(s)	1379
BsiHKAI	GWGCWC	1 cut(s)	1341
BsiHKCI	CYCGRG	1 cut(s)	1344
BsiSI	CCGG	3 cut(s)	144, 1380, 2581
BslFI	GGGAC	2 cut(s)	160, 1314
BslI	CCNNNNNNNGG	6 cut(s)	22, 560, 1058, 1072, 1595, 2646
BsmAI	GTCTC	1 cut(s)	993
BsmFI	GGGAC	2 cut(s)	160, 1314
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	120, 1184, 1451, 1944
BsoBI	CYCGRG	1 cut(s)	1344
Bsp1286I	GDGCHC	3 cut(s)	773, 1341, 2366
Bsp1407I	TGTACA	1 cut(s)	2094
Bsp143I	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
BspACI	CCGC	4 cut(s)	117, 1132, 1312, 1846
BspANI	GGCC	4 cut(s)	120, 1184, 1451, 1944
BspCNI	CTCAG	2 cut(s)	1765, 2266
BspFNI	CGCG	1 cut(s)	1134
BspHI	TCATGA	2 cut(s)	84, 1995
BspLI	GGNNCC	7 cut(s)	30, 1000, 1063, 1077, 1302, 2043, 2263
BspMAI	CTGCAG	1 cut(s)	1423
BspPI	GGATC	1 cut(s)	2700
BspT107I	GGYRCC	3 cut(s)	28, 998, 2261
BsrBI	CCGCTC	1 cut(s)	1846
BsrDI	GCAATG	1 cut(s)	191
BsrFI	RCCGGY	1 cut(s)	1379
BsrGI	TGTACA	1 cut(s)	2094
BsrI	ACTGG	6 cut(s)	154, 1623, 1809, 1873, 1925, 2560
BssAI	RCCGGY	1 cut(s)	1379
BssECI	CCNNGG	4 cut(s)	112, 1002, 1856, 2162
BssMI	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
BssNI	GRCGYC	1 cut(s)	29
BssSI	CACGAG	1 cut(s)	1938
BssT1I	CCWWGG	4 cut(s)	112, 1002, 1856, 2162
Bst2BI	CACGAG	1 cut(s)	1938
Bst2UI	CCWGG	2 cut(s)	1305, 1631
Bst4CI	ACNGT	7 cut(s)	711, 736, 1336, 2038, 2468, 2682, 2720
Bst6I	CTCTTC	5 cut(s)	432, 654, 1119, 1420, 2074
BstACI	GRCGYC	1 cut(s)	29
BstAUI	TGTACA	1 cut(s)	2094
BstBAI	YACGTR	1 cut(s)	2450
BstC8I	GCNNGC	5 cut(s)	1433, 1570, 1586, 2362, 2672
BstDEI	CTNAG	6 cut(s)	161, 596, 892, 947, 1773, 2253
BstEII	GGTNACC	1 cut(s)	1860
BstFNI	CGCG	1 cut(s)	1134
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 1437
BstKTI	GATC	5 cut(s)	78, 1018, 1090, 1545, 2695
BstMAI	GTCTC	1 cut(s)	993
BstMBI	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
BstMWI	GCNNNNNNNGC	3 cut(s)	1068, 1336, 2108
BstNI	CCWGG	2 cut(s)	1305, 1631
BstNSI	RCATGY	3 cut(s)	1216, 1713, 1796
BstPI	GGTNACC	1 cut(s)	1860
BstSCI	CCNGG	3 cut(s)	143, 1303, 1629
BstSFI	CTRYAG	1 cut(s)	1419
BstUI	CGCG	1 cut(s)	1134
BstV1I	GCAGC	4 cut(s)	1069, 1732, 2612, 2642
BstV2I	GAAGAC	2 cut(s)	2053, 2217
BstX2I	RGATCY	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1015
BsuI	GTATCC	1 cut(s)	1724
BsuRI	GGCC	4 cut(s)	120, 1184, 1451, 1944
BtgZI	GCGATG	1 cut(s)	654
BtsI	GCAGTG	2 cut(s)	487, 1262
BtsIMutI	CAGTG	7 cut(s)	487, 1262, 1341, 1552, 1655, 2473, 2687
Cac8I	GCNNGC	5 cut(s)	1433, 1570, 1586, 2362, 2672
CciI	TCATGA	2 cut(s)	84, 1995
CfoI	GCGC	2 cut(s)	31, 1437
Cfr10I	RCCGGY	1 cut(s)	1379
Cfr13I	GGNCC	3 cut(s)	1183, 1301, 1943
CseI	GACGC	1 cut(s)	2135
Csp6I	GTAC	4 cut(s)	408, 1273, 2095, 2200
CspAI	ACCGGT	1 cut(s)	1379
CspCI	CAANNNNNGTGG	2 cut(s)	1528, 1563
CviQI	GTAC	4 cut(s)	408, 1273, 2095, 2200
DdeI	CTNAG	6 cut(s)	161, 596, 892, 947, 1773, 2253
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	5 cut(s)	77, 1017, 1089, 1544, 2694
DpnII	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
EaeI	YGGCCR	1 cut(s)	1449
Eam1104I	CTCTTC	5 cut(s)	432, 654, 1119, 1420, 2074
EarI	CTCTTC	5 cut(s)	432, 654, 1119, 1420, 2074
Eco130I	CCWWGG	4 cut(s)	112, 1002, 1856, 2162
Eco24I	GRGCYC	2 cut(s)	773, 2366
Eco32I	GATATC	2 cut(s)	2295, 2494
Eco47I	GGWCC	1 cut(s)	1301
Eco57I	CTGAAG	6 cut(s)	836, 2067, 2097, 2211, 2213, 2691
Eco88I	CYCGRG	1 cut(s)	1344
Eco91I	GGTNACC	1 cut(s)	1860
EcoO109I	RGGNCCY	1 cut(s)	1301
EcoO65I	GGTNACC	1 cut(s)	1860
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	1303, 1629
EcoRV	GATATC	2 cut(s)	2295, 2494
EcoT14I	CCWWGG	4 cut(s)	112, 1002, 1856, 2162
EcoT22I	ATGCAT	1 cut(s)	2104
EcoT38I	GRGCYC	2 cut(s)	773, 2366
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	4 cut(s)	112, 1002, 1856, 2162
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FaqI	GGGAC	2 cut(s)	160, 1314
FauI	CCCGC	1 cut(s)	1139
FauNDI	CATATG	2 cut(s)	2176, 2356
Fnu4HI	GCNGC	6 cut(s)	118, 1083, 1721, 1847, 2601, 2631
FriOI	GRGCYC	2 cut(s)	773, 2366
Fsp4HI	GCNGC	6 cut(s)	118, 1083, 1721, 1847, 2601, 2631
FspBI	CTAG	8 cut(s)	636, 1193, 1565, 1980, 2009, 2163, 2612, 2667
FspI	TGCGCA	1 cut(s)	1436
GlaI	GCGC	2 cut(s)	30, 1436
GluI	GCNGC	6 cut(s)	118, 1083, 1721, 1847, 2601, 2631
GsaI	CCCAGC	4 cut(s)	47, 564, 588, 1812
GsuI	CTGGAG	1 cut(s)	1893
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	120, 1184, 1451, 1944
HapII	CCGG	3 cut(s)	144, 1380, 2581
HgaI	GACGC	1 cut(s)	2135
HhaI	GCGC	2 cut(s)	31, 1437
Hin1I	GRCGYC	1 cut(s)	29
Hin6I	GCGC	2 cut(s)	29, 1435
HinP1I	GCGC	2 cut(s)	29, 1435
HincII	GTYRAC	1 cut(s)	2723
HindII	GTYRAC	1 cut(s)	2723
HindIII	AAGCTT	1 cut(s)	1582
HpaII	CCGG	3 cut(s)	144, 1380, 2581
HphI	GGTGA	6 cut(s)	272, 338, 1685, 2044, 2404, 2723
Hpy166II	GTNNAC	3 cut(s)	2095, 2557, 2723
Hpy8I	GTNNAC	3 cut(s)	2095, 2557, 2723
HpyCH4III	ACNGT	7 cut(s)	711, 736, 1336, 2038, 2468, 2682, 2720
HpyCH4IV	ACGT	1 cut(s)	2449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1068, 1336, 2108
HpyF3I	CTNAG	6 cut(s)	161, 596, 892, 947, 1773, 2253
HpySE526I	ACGT	1 cut(s)	2449
Hsp92I	GRCGYC	1 cut(s)	29
HspAI	GCGC	2 cut(s)	29, 1435
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
LmnI	GCTCC	6 cut(s)	205, 623, 1067, 1843, 2005, 2679
Lsp1109I	GCAGC	4 cut(s)	1069, 1732, 2612, 2642
LweI	GCATC	7 cut(s)	475, 837, 926, 1136, 2127, 2313, 2749
MaeI	CTAG	8 cut(s)	636, 1193, 1565, 1980, 2009, 2163, 2612, 2667
MaeII	ACGT	1 cut(s)	2449
MaeIII	GTNAC	5 cut(s)	608, 1236, 1860, 1970, 2032
MalI	GATC	5 cut(s)	77, 1017, 1089, 1544, 2694
MbiI	CCGCTC	1 cut(s)	1846
MboI	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
MfeI	CAATTG	1 cut(s)	2211
MflI	RGATCY	1 cut(s)	1015
MhlI	GDGCHC	3 cut(s)	773, 1341, 2366
MlsI	TGGCCA	1 cut(s)	1451
MluNI	TGGCCA	1 cut(s)	1451
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	449, 1193, 1214
MmeI	TCCRAC	3 cut(s)	668, 2326, 2687
Mox20I	TGGCCA	1 cut(s)	1451
Mph1103I	ATGCAT	1 cut(s)	2104
MroXI	GAANNNNTTC	4 cut(s)	549, 782, 971, 2187
MscI	TGGCCA	1 cut(s)	1451
MseI	TTAA	7 cut(s)	309, 792, 806, 1205, 1500, 2133, 2430
MslI	CAYNNNNRTG	2 cut(s)	534, 2589
Msp20I	TGGCCA	1 cut(s)	1451
MspA1I	CMGCKG	2 cut(s)	1243, 2633
MspI	CCGG	3 cut(s)	144, 1380, 2581
MspR9I	CCNGG	3 cut(s)	145, 1305, 1631
MunI	CAATTG	1 cut(s)	2211
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	1305, 1631
MvnI	CGCG	1 cut(s)	1134
MwoI	GCNNNNNNNGC	3 cut(s)	1068, 1336, 2108
NarI	GGCGCC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	145
NdeI	CATATG	2 cut(s)	2176, 2356
NdeII	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
NlaIV	GGNNCC	7 cut(s)	30, 1000, 1063, 1077, 1302, 2043, 2263
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	3 cut(s)	608, 1236, 2032
NsbI	TGCGCA	1 cut(s)	1436
NsiI	ATGCAT	1 cut(s)	2104
NspI	RCATGY	3 cut(s)	1216, 1713, 1796
PagI	TCATGA	2 cut(s)	84, 1995
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	4 cut(s)	549, 782, 971, 2187
PfeI	GAWTC	7 cut(s)	910, 1136, 1150, 2052, 2183, 2536, 2636
PflMI	CCANNNNNTGG	2 cut(s)	1058, 1595
PinAI	ACCGGT	1 cut(s)	1379
PkrI	GCNGC	6 cut(s)	119, 1084, 1722, 1848, 2602, 2632
PleI	GAGTC	3 cut(s)	448, 1193, 1214
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	3 cut(s)	448, 1193, 1214
Ppu21I	YACGTR	1 cut(s)	2450
PpuMI	RGGWCCY	1 cut(s)	1301
PsiI	TTATAA	1 cut(s)	2757
Psp5II	RGGWCCY	1 cut(s)	1301
Psp6I	CCWGG	2 cut(s)	1303, 1629
PspEI	GGTNACC	1 cut(s)	1860
PspFI	CCCAGC	4 cut(s)	43, 560, 584, 1808
PspGI	CCWGG	2 cut(s)	1303, 1629
PspN4I	GGNNCC	7 cut(s)	30, 1000, 1063, 1077, 1302, 2043, 2263
PspPI	GGNCC	3 cut(s)	1183, 1301, 1943
PspPPI	RGGWCCY	1 cut(s)	1301
PsrI	GAACNNNNNNTAC	2 cut(s)	2172, 2204
PstI	CTGCAG	1 cut(s)	1423
PsuI	RGATCY	1 cut(s)	1015
PvuII	CAGCTG	2 cut(s)	1243, 2633
RsaI	GTAC	4 cut(s)	409, 1274, 2096, 2201
RsaNI	GTAC	4 cut(s)	408, 1273, 2095, 2200
RseI	CAYNNNNRTG	2 cut(s)	534, 2589
SaqAI	TTAA	7 cut(s)	309, 792, 806, 1205, 1500, 2133, 2430
SatI	GCNGC	6 cut(s)	118, 1083, 1721, 1847, 2601, 2631
Sau3AI	GATC	5 cut(s)	75, 1015, 1087, 1542, 2692
Sau96I	GGNCC	3 cut(s)	1183, 1301, 1943
ScaI	AGTACT	1 cut(s)	1274
SchI	GAGTC	3 cut(s)	449, 1193, 1214
ScrFI	CCNGG	3 cut(s)	145, 1305, 1631
SduI	GDGCHC	3 cut(s)	773, 1341, 2366
SfaNI	GCATC	7 cut(s)	475, 837, 926, 1136, 2127, 2313, 2749
SfcI	CTRYAG	1 cut(s)	1419
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	1301
SmiMI	CAYNNNNRTG	2 cut(s)	534, 2589
SmlI	CTYRAG	3 cut(s)	772, 1508, 2311
SmoI	CTYRAG	3 cut(s)	772, 1508, 2311
SpeI	ACTAGT	1 cut(s)	2611
SsiI	CCGC	4 cut(s)	117, 1132, 1312, 1846
SspDI	GGCGCC	1 cut(s)	28
SspI	AATATT	3 cut(s)	1165, 1264, 2528
SspMI	CTAG	8 cut(s)	636, 1193, 1565, 1980, 2009, 2163, 2612, 2667
StyD4I	CCNGG	3 cut(s)	143, 1303, 1629
StyI	CCWWGG	4 cut(s)	112, 1002, 1856, 2162
TaaI	ACNGT	7 cut(s)	711, 736, 1336, 2038, 2468, 2682, 2720
TaiI	ACGT	1 cut(s)	2452
TaqI	TCGA	6 cut(s)	78, 132, 195, 1357, 1962, 2124
TatI	WGTACW	4 cut(s)	407, 1272, 2094, 2199
TauI	GCSGC	2 cut(s)	120, 1849
TfiI	GAWTC	7 cut(s)	910, 1136, 1150, 2052, 2183, 2536, 2636
Tru1I	TTAA	7 cut(s)	309, 792, 806, 1205, 1500, 2133, 2430
Tru9I	TTAA	7 cut(s)	309, 792, 806, 1205, 1500, 2133, 2430
TscAI	CASTG	7 cut(s)	487, 1262, 1341, 1552, 1662, 2473, 2687
TseFI	GTSAC	3 cut(s)	608, 1236, 2032
TseI	GCWGC	4 cut(s)	1082, 1720, 2600, 2630
Tsp45I	GTSAC	3 cut(s)	608, 1236, 2032
TspGWI	ACGGA	3 cut(s)	543, 1711, 2662
TspRI	CASTG	7 cut(s)	487, 1262, 1341, 1552, 1662, 2473, 2687
Van91I	CCANNNNNTGG	2 cut(s)	1058, 1595
VpaK11BI	GGWCC	1 cut(s)	1301
XapI	RAATTY	7 cut(s)	38, 356, 781, 971, 2416, 2422, 2650
XbaI	TCTAGA	1 cut(s)	1979
XceI	RCATGY	3 cut(s)	1216, 1713, 1796
XmaJI	CCTAGG	1 cut(s)	2162
XmnI	GAANNNNTTC	4 cut(s)	549, 782, 971, 2187
XspI	CTAG	8 cut(s)	636, 1193, 1565, 1980, 2009, 2163, 2612, 2667
ZrmI	AGTACT	1 cut(s)	1274
Zsp2I	ATGCAT	1 cut(s)	2104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.