Rh2AG399400

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
59547561 .. 59552828
5268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG399400.1

Sequence Viewer

Length: 1767 bp
ATGCTTAGGAAACATAAACAACAGAAAGAATTCAAGAGCATGATGTCTCAACTCGGTGCCTTGGATATTGAAGATCTTGTTCATCAGGGAAGGAACATGAGGTGTTGTCCATATTATGGCTCCCGTAGCATGGTTCCTGCTGCTGATCTGGTGGTTCTACCATATCAATCTCTTCTTTCAAAAGCATCCCGCGAATCACTTGGTCTGAATCTAAAGAACAATATTATTATCATAGATGAGGCCCACAATCTAGCTGACTCCTTAATCAGCATGTATGACTCAAAAATCACTTTGTCGCAGCTGGAAGATGTGCAGTGCAATATTGAAAAGTACTTTGCAAGGTTTAGCAATCTCTTGGGACCTGGAAACCGCAGATACATCCAAACGCTTACAGTGCTTACTCGGGCTTTTCTTCGAGTTTTGCTCAATGAGGACACTGGTTATGAAGGTTCTTGCCATGATACTGAAAACTCTTCTAGAGAAAATGGCGTGCCTACTTCCTCTATGGCCATCAATGATTTTTTATTTTCACTCAATATAGACAACATCAACTTGGTTAAATTGCTTGAGTATATAAAGGAAAGCAAAATCATGCACAAGATCAGTGGATATGGGGATAAACTAGCCAGCTTTGAAAAAAGCTTGCCACTTGATGGTAGTCAAGAAAGAAGCACTCTGTCCAGTTTCCAGGCATTAGCTGATTTTTTGCTATCACTGACAAACAAAGATGGTGATGGGAGGATTATCATTTCACGGACTAAACCAACATGCTCTGGGCAGCAAGGGGGATACATCAAATATGTTATGCTCACAGGGGAGAAGATATTTTCTGAGATTGTGGAACAGGCACATGCTGTGCTACTGGCTGGGGGAACTCTGCAACCCATAGAAGAAACGAGGGAGCGGCTTTTTCCTTGGTTACCACCGAACCAGTTGCATTTGTTTTCATGTAGCCACATTGTTCCTCCAGAGAGCATTTTGCCAGTTGCAGTTGCTCGTGGCCCTTCTGGTCAGCCTTTCGATTTTAGTTACAGCTCTAGAAGGTCATCAATCATGATACAGGAGCTAGGGCGTTTGGTTTGCAATTTGGTGACAGTGGTTCCTGAAGGAATTGTTGTCTTCTTCTCTTCATTTGATTATGAAGGAGAGGTGTACAATGCATGGGAGGCTTCAGGTATCCTCGATAGAATTAAGAAGAAGAAGCGTCTATTTAGAGAGCCTAGGAAGAATACATATGTAGAATCTGTTCTGAAGGAGTACAAGGAAACAATTGATACCTTGTCTTCAGGAGAAAGGAAAGAAAATCCTTCTCAGAGTGGTGCCATACTTCTTGCTGTTGTTGGTGGTAAGATATCGGAGGGCATCAACTTGAGTGATGGGATGGGTCGGTGTATAGTCATGGTTGGACTGCCCTATGCGAGCCCTTCTGATGTTGAGCTGATGGAGAGGGTGAAGTACATTGAAGGATTGGGAAATTCAAATTCGATTAAGATTACCAATTCTCTACGTGGCAATGAACTTTACAGTGGAGAAGCACATGAAGGATTTGATATCCTCCGAAGTTGCAGACACAGAGGAAAAGAATATTATGAGAATCTTTGCATGAAAGCTGTAAACCAGTCCATCGCTGATTCCTCAACACGGAATTTCAGGCATCCAACTAGCAAGCTCCCACAGTGGATAAAGGATCGTTTCGTTGCTTCAGGTGATTACGGTCAACTTCATAGGATGTTGCATCAGTTTTTTAGTTATAACAAAAAGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

588

Amino Acids

66.16

Weight (kDa)

8.35

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD_2 PF06733 8 - 101 4.1e-28 DEAD_2
Helicase_C_2 PF13307 361 - 542 2e-28 Helicase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1752
AccB1I GGYRCC 2 cut(s) 56, 1319
AccB7I CCANNNNNTGG 2 cut(s) 116, 653
AccBSI CCGCTC 1 cut(s) 904
AccII CGCG 1 cut(s) 192
AciI CCGC 3 cut(s) 190, 370, 904
AclWI GGATC 1 cut(s) 1695
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 4 cut(s) 29, 1474, 1480, 1645
AcuI CTGAAG 5 cut(s) 1125, 1155, 1269, 1271, 1686
AfaI GTAC 4 cut(s) 332, 1154, 1259, 1457
AfiI CCNNNNNNNGG 4 cut(s) 116, 130, 653, 1641
AgsI TTSAA 7 cut(s) 34, 71, 180, 326, 635, 1463, 1479
AjnI CCWGG 2 cut(s) 361, 687
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 1695
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 3 cut(s) 240, 507, 1000
ApeKI GCWGC 3 cut(s) 140, 298, 778
ApoI RAATTY 4 cut(s) 29, 1474, 1480, 1645
Asp700I GAANNNNTTC 2 cut(s) 29, 1245
AspA2I CCTAGG 1 cut(s) 1220
AspS9I GGNCC 3 cut(s) 241, 359, 1001
AsuHPI GGTGA 4 cut(s) 743, 1102, 1462, 1718
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 359
AvrII CCTAGG 1 cut(s) 1220
BalI TGGCCA 1 cut(s) 509
BanI GGYRCC 2 cut(s) 56, 1319
BanII GRGCYC 1 cut(s) 1424
BauI CACGAG 1 cut(s) 996
BbsI GAAGAC 2 cut(s) 1111, 1275
BbvI GCAGC 3 cut(s) 127, 310, 790
BccI CCATC 8 cut(s) 518, 647, 722, 728, 1370, 1375, 1435, 1631
BcgI CGANNNNNNTGC 2 cut(s) 916, 950
BciT130I CCWGG 2 cut(s) 363, 689
BciVI GTATCC 2 cut(s) 782, 1187
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 7 cut(s) 251, 477, 623, 1038, 1067, 1221, 1662
BfuI GTATCC 2 cut(s) 782, 1187
BglII AGATCT 1 cut(s) 73
BisI GCNGC 4 cut(s) 141, 299, 779, 905
BlnI CCTAGG 1 cut(s) 1220
BlsI GCNGC 4 cut(s) 142, 300, 780, 906
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 363, 689
Bme18I GGWCC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 3 cut(s) 241, 359, 1001
BmiI GGNNCC 6 cut(s) 58, 121, 135, 360, 1101, 1321
BmrFI CCNGG 2 cut(s) 363, 689
BmsI GCATC 4 cut(s) 194, 1371, 1663, 1744
BpiI GAAGAC 2 cut(s) 1111, 1275
BplI GAGNNNNNCTC 2 cut(s) 408, 440
BpmI CTGGAG 1 cut(s) 951
Bpu10I CCTNAGC 1 cut(s) 5
BpuEI CTTGAG 2 cut(s) 587, 1390
BsaAI YACGTR 1 cut(s) 1508
BsaJI CCNNGG 3 cut(s) 60, 914, 1220
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 130, 653, 1641
Bse1I ACTGG 6 cut(s) 442, 681, 867, 931, 983, 1618
Bse3DI GCAATG 1 cut(s) 1519
BseBI CCWGG 2 cut(s) 363, 689
BseDI CCNNGG 3 cut(s) 60, 914, 1220
BseGI GGATG 5 cut(s) 185, 378, 1386, 1654, 1734
BseLI CCNNNNNNNGG 4 cut(s) 116, 130, 653, 1641
BseMI GCAATG 1 cut(s) 1519
BseMII CTCAG 2 cut(s) 822, 1325
BseNI ACTGG 6 cut(s) 442, 681, 867, 931, 983, 1618
BseXI GCAGC 3 cut(s) 127, 310, 790
BseYI CCCAGC 1 cut(s) 866
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 242, 509, 1002
BshNI GGYRCC 2 cut(s) 56, 1319
BsiHKCI CYCGRG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 4 cut(s) 116, 130, 653, 1641
BsmAI GTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 372
BsnI GGCC 3 cut(s) 242, 509, 1002
BsoBI CYCGRG 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 1424
Bsp1407I TGTACA 1 cut(s) 1152
Bsp143I GATC 4 cut(s) 73, 145, 600, 1687
BspACI CCGC 3 cut(s) 190, 370, 904
BspANI GGCC 3 cut(s) 242, 509, 1002
BspCNI CTCAG 2 cut(s) 823, 1324
BspFNI CGCG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 6 cut(s) 58, 121, 135, 360, 1101, 1321
BspPI GGATC 1 cut(s) 1695
BspT107I GGYRCC 2 cut(s) 56, 1319
BsrBI CCGCTC 1 cut(s) 904
BsrDI GCAATG 1 cut(s) 1519
BsrGI TGTACA 1 cut(s) 1152
BsrI ACTGG 6 cut(s) 442, 681, 867, 931, 983, 1618
BssECI CCNNGG 3 cut(s) 60, 914, 1220
BssMI GATC 4 cut(s) 73, 145, 600, 1687
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 3 cut(s) 60, 914, 1220
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 2 cut(s) 363, 689
Bst4CI ACNGT 5 cut(s) 394, 1096, 1526, 1677, 1715
Bst6I CTCTTC 3 cut(s) 177, 478, 1132
BstAUI TGTACA 1 cut(s) 1152
BstBAI YACGTR 1 cut(s) 1508
BstC8I GCNNGC 5 cut(s) 491, 628, 644, 1420, 1667
BstDEI CTNAG 3 cut(s) 5, 831, 1311
BstEII GGTNACC 1 cut(s) 918
BstF5I GGATG 5 cut(s) 185, 378, 1386, 1654, 1734
BstFNI CGCG 1 cut(s) 192
BstKTI GATC 4 cut(s) 76, 148, 603, 1690
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 4 cut(s) 73, 145, 600, 1687
BstMWI GCNNNNNNNGC 3 cut(s) 126, 394, 1166
BstNI CCWGG 2 cut(s) 363, 689
BstNSI RCATGY 3 cut(s) 274, 771, 854
BstPI GGTNACC 1 cut(s) 918
BstSCI CCNGG 2 cut(s) 361, 687
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 127, 310, 790
BstV2I GAAGAC 2 cut(s) 1111, 1275
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuI GTATCC 2 cut(s) 782, 1187
BsuRI GGCC 3 cut(s) 242, 509, 1002
BtgZI GCGATG 1 cut(s) 1609
BtsCI GGATG 5 cut(s) 185, 378, 1386, 1654, 1734
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 8 cut(s) 320, 399, 435, 610, 713, 1101, 1531, 1682
Cac8I GCNNGC 5 cut(s) 491, 628, 644, 1420, 1667
CciI TCATGA 1 cut(s) 1053
Cfr13I GGNCC 3 cut(s) 241, 359, 1001
CseI GACGC 1 cut(s) 1193
Csp6I GTAC 4 cut(s) 331, 1153, 1258, 1456
CspCI CAANNNNNGTGG 2 cut(s) 586, 621
CviQI GTAC 4 cut(s) 331, 1153, 1258, 1456
DdeI CTNAG 3 cut(s) 5, 831, 1311
DpnI GATC 4 cut(s) 75, 147, 602, 1689
DpnII GATC 4 cut(s) 73, 145, 600, 1687
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 3 cut(s) 177, 478, 1132
EarI CTCTTC 3 cut(s) 177, 478, 1132
Eco130I CCWWGG 3 cut(s) 60, 914, 1220
Eco24I GRGCYC 1 cut(s) 1424
Eco32I GATATC 2 cut(s) 1353, 1552
Eco47I GGWCC 1 cut(s) 359
Eco57I CTGAAG 5 cut(s) 1125, 1155, 1269, 1271, 1686
Eco88I CYCGRG 1 cut(s) 402
Eco91I GGTNACC 1 cut(s) 918
EcoO109I RGGNCCY 1 cut(s) 359
EcoO65I GGTNACC 1 cut(s) 918
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 2 cut(s) 361, 687
EcoRV GATATC 2 cut(s) 1353, 1552
EcoT14I CCWWGG 3 cut(s) 60, 914, 1220
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 1 cut(s) 1424
ErhI CCWWGG 3 cut(s) 60, 914, 1220
FaqI GGGAC 1 cut(s) 372
FauI CCCGC 1 cut(s) 197
FauNDI CATATG 1 cut(s) 1234
Fnu4HI GCNGC 4 cut(s) 141, 299, 779, 905
FokI GGATG 5 cut(s) 172, 365, 1393, 1641, 1741
FriOI GRGCYC 1 cut(s) 1424
Fsp4HI GCNGC 4 cut(s) 141, 299, 779, 905
FspBI CTAG 7 cut(s) 251, 477, 623, 1038, 1067, 1221, 1662
GluI GCNGC 4 cut(s) 141, 299, 779, 905
GsaI CCCAGC 1 cut(s) 870
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 3 cut(s) 242, 509, 1002
HgaI GACGC 1 cut(s) 1193
HincII GTYRAC 1 cut(s) 1718
HindII GTYRAC 1 cut(s) 1718
HindIII AAGCTT 1 cut(s) 640
HinfI GANTC 7 cut(s) 194, 208, 257, 278, 1241, 1594, 1631
HphI GGTGA 4 cut(s) 743, 1102, 1462, 1718
Hpy166II GTNNAC 3 cut(s) 1153, 1615, 1718
Hpy188I TCNGA 7 cut(s) 207, 832, 1251, 1314, 1357, 1429, 1559
Hpy188III TCNNGA 8 cut(s) 34, 477, 662, 968, 1038, 1054, 1103, 1287
Hpy8I GTNNAC 3 cut(s) 1153, 1615, 1718
HpyCH4III ACNGT 5 cut(s) 394, 1096, 1526, 1677, 1715
HpyCH4IV ACGT 1 cut(s) 1507
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 394, 1166
HpyF3I CTNAG 3 cut(s) 5, 831, 1311
HpySE526I ACGT 1 cut(s) 1507
Kzo9I GATC 4 cut(s) 73, 145, 600, 1687
LmnI GCTCC 4 cut(s) 125, 901, 1063, 1674
Lsp1109I GCAGC 3 cut(s) 127, 310, 790
LweI GCATC 4 cut(s) 194, 1371, 1663, 1744
MaeI CTAG 7 cut(s) 251, 477, 623, 1038, 1067, 1221, 1662
MaeII ACGT 1 cut(s) 1507
MaeIII GTNAC 3 cut(s) 918, 1028, 1090
MalI GATC 4 cut(s) 75, 147, 602, 1689
MbiI CCGCTC 1 cut(s) 904
MboI GATC 4 cut(s) 73, 145, 600, 1687
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 1424
MlsI TGGCCA 1 cut(s) 509
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 251, 272
MmeI TCCRAC 2 cut(s) 1384, 1682
Mox20I TGGCCA 1 cut(s) 509
Mph1103I ATGCAT 1 cut(s) 1162
MroXI GAANNNNTTC 2 cut(s) 29, 1245
MscI TGGCCA 1 cut(s) 509
MseI TTAA 4 cut(s) 263, 558, 1191, 1488
Msp20I TGGCCA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 363, 689
MunI CAATTG 1 cut(s) 1269
MvaI CCWGG 2 cut(s) 363, 689
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 126, 394, 1166
NdeI CATATG 1 cut(s) 1234
NdeII GATC 4 cut(s) 73, 145, 600, 1687
NlaIV GGNNCC 6 cut(s) 58, 121, 135, 360, 1101, 1321
NmuCI GTSAC 1 cut(s) 1090
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 3 cut(s) 274, 771, 854
PagI TCATGA 1 cut(s) 1053
PdmI GAANNNNTTC 2 cut(s) 29, 1245
PfeI GAWTC 5 cut(s) 194, 208, 1241, 1594, 1631
PflMI CCANNNNNTGG 2 cut(s) 116, 653
PkrI GCNGC 4 cut(s) 142, 300, 780, 906
PleI GAGTC 2 cut(s) 251, 272
PpsI GAGTC 2 cut(s) 251, 272
Ppu21I YACGTR 1 cut(s) 1508
PpuMI RGGWCCY 1 cut(s) 359
PsiI TTATAA 1 cut(s) 1752
Psp5II RGGWCCY 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 361, 687
PspEI GGTNACC 1 cut(s) 918
PspFI CCCAGC 1 cut(s) 866
PspGI CCWGG 2 cut(s) 361, 687
PspN4I GGNNCC 6 cut(s) 58, 121, 135, 360, 1101, 1321
PspPI GGNCC 3 cut(s) 241, 359, 1001
PspPPI RGGWCCY 1 cut(s) 359
PsrI GAACNNNNNNTAC 2 cut(s) 1230, 1262
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 301
RsaI GTAC 4 cut(s) 332, 1154, 1259, 1457
RsaNI GTAC 4 cut(s) 331, 1153, 1258, 1456
SaqAI TTAA 4 cut(s) 263, 558, 1191, 1488
SatI GCNGC 4 cut(s) 141, 299, 779, 905
Sau3AI GATC 4 cut(s) 73, 145, 600, 1687
Sau96I GGNCC 3 cut(s) 241, 359, 1001
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 2 cut(s) 251, 272
ScrFI CCNGG 2 cut(s) 363, 689
SduI GDGCHC 1 cut(s) 1424
SfaNI GCATC 4 cut(s) 194, 1371, 1663, 1744
SinI GGWCC 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 566, 1369
SmoI CTYRAG 2 cut(s) 566, 1369
SsiI CCGC 3 cut(s) 190, 370, 904
SspI AATATT 3 cut(s) 223, 322, 1586
SspMI CTAG 7 cut(s) 251, 477, 623, 1038, 1067, 1221, 1662
StyD4I CCNGG 2 cut(s) 361, 687
StyI CCWWGG 3 cut(s) 60, 914, 1220
TaaI ACNGT 5 cut(s) 394, 1096, 1526, 1677, 1715
TaiI ACGT 1 cut(s) 1510
TaqI TCGA 4 cut(s) 415, 1020, 1182, 1484
TatI WGTACW 4 cut(s) 330, 1152, 1257, 1455
TauI GCSGC 1 cut(s) 907
TfiI GAWTC 5 cut(s) 194, 208, 1241, 1594, 1631
Tru1I TTAA 4 cut(s) 263, 558, 1191, 1488
Tru9I TTAA 4 cut(s) 263, 558, 1191, 1488
TscAI CASTG 8 cut(s) 320, 399, 442, 610, 720, 1101, 1531, 1682
TseFI GTSAC 1 cut(s) 1090
TseI GCWGC 3 cut(s) 140, 298, 778
Tsp45I GTSAC 1 cut(s) 1090
TspDTI ATGAA 9 cut(s) 71, 459, 936, 1119, 1155, 1530, 1554, 1619, 1712
TspGWI ACGGA 2 cut(s) 769, 1657
TspRI CASTG 8 cut(s) 320, 399, 442, 610, 720, 1101, 1531, 1682
Van91I CCANNNNNTGG 2 cut(s) 116, 653
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 4 cut(s) 29, 1474, 1480, 1645
XbaI TCTAGA 2 cut(s) 476, 1037
XceI RCATGY 3 cut(s) 274, 771, 854
XmaJI CCTAGG 1 cut(s) 1220
XmnI GAANNNNTTC 2 cut(s) 29, 1245
XspI CTAG 7 cut(s) 251, 477, 623, 1038, 1067, 1221, 1662
ZrmI AGTACT 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.