RLG00000019734

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
56118028 .. 56120712
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019734

Sequence Viewer

Length: 1788 bp
ATGTCTCAACTCGGTGCCTTGGATATTGAAGATCTTGTTCATCAGGGAAGGAACATGAGGTGTTGTCCATATTATGGCTCCAGAAGCATGGTTCCTGCTGCTGATCTGGTGGTTCTACCATATCAATCTCTTCTTTCCAAAGCATCCCGCGAATCAGTTGGTCTGAATCTAAAGAACAATATTATTATCATAGATGAGGCCCACAATCTAGCTGACTCCTTAATCAGCATGTATGACTCAAAAATCACTTTGTCACAGCTGGAAGATGTGCAGTGCAATATTGAAAAGTACTTTGCAAGGTTTAGCAATCTCTTGGGACCTGGAAACCGCAGATACATCCAAACGCTCACAGTGCTCACTCGGGCTTTTCTTCGAGTTTTGCTCAATGAGGACACCGGTTATGAAGTTTCTTGCCATGATACTGAAAACTCTTCTGGAGAAAATGGCTTGCCTACTTCCTCTATGGCCATCAATGATTTTTTATTTTCACTCAATATAGACAACATCAACTTGGTTAAATTGCTTGAGTATATAAAGGAAAGCAGAATCATGCACAAGATCAGTGGATATGGGGATAAACTAGCCAGCTTTGAAAAAAGTTTGCCACTTGATGGTAGTGAAGAAAGAAGCACTCTGTCCAGTTTCCAGGCATTAGCTGAATTTTTGCTGTCACTGACAAACAAAGATGGTGATGGGAGGATTATCATTTCACGGACTAAACCAACATGCTCTGGGCAGCAAGGGGGATACATCAAATATGTTATGCTCACAGGGGAGAAGATATTTTCTGAGATTGTGGAACAGGCACATGCTGTGCTACTGGCTGGGGGAACTCTGCAACCCATAGAAGAAACGAGGGAGCGGCTTTTTCCTTGGTTACCACCGAACCAGTTGCATTTCTTTTCATGTAGCCACATTGTTCCTCCAGAGAGCATTTTGCCAGTTGCAGTTGCTCGTGGCCCTTCTGGTCAGCCCTTCGATTTTAGTTACAGCTCTAGAAGGTCATCAATCATGATACAGGAGCTAGGGCGTTTGGTTTGCAATTTGGTGACAGTGGTCCCTGAAGGAATCGTTGTCTTCTTCTCATCATTTGATTATGAAGGAGAGGTGTACAATGCATGGGAGGCTTCAGGCATCCTCGATAGAATTAAGAAGAAGAAGCGTCTATTTAGAGAGCCTAGGAAGAATACATATGTAGAATCTGTTCTGAAGGAGTACAAGGAAACAATTGATACCTTGTCTTCAGTAGAAAGGAAAGAAAATCCTTCTCAGAGTGGTGCCATACTTCTCGCTGTTGTTGGTGGTAAGATATCGGAGGGCATCAACTTGAGTGATGGGATGGGTCGGTGTATAGTCATGGTTGGACTGCCCTATGCGAGCCCTTCTGATGTTGAGCTGATGGAGAGGGTGAAGCACATTGAAGGATTGGGAAATTCAAATTCGATTAAGATGACCAATTCTTTATGTGGTAATGAACTTTACAGTGGAGAAGCACATGAAGGATTTGATATCCTCCGAAGTTGCAGAAACAGAGGAAAAGAATATTATGAGAATCTTTGCATGAAAGCTGTAAACCAGTCCATCGGTAGAGCAATCCGGCATATAAATGATTATGCAGCAATTTTACTAGTTGATACACGCTATGCAGCTGATTCCTCAACACGGAATTTCAGGCATCCAACTAGCAAGCTCCCACAGTGGATAAAGGATCGTTTCGTTGCTTCAGGTGATTACGGTCAACTTCATAGGATGTTGCATCAGTTTTTTAGTTATAACAAAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

596

Amino Acids

66.75

Weight (kDa)

6.69

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD_2 PF06733 5 - 87 2.4e-27 DEAD_2
Helicase_C_2 PF13307 347 - 558 2.8e-42 Helicase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1773
AccB1I GGYRCC 2 cut(s) 14, 1277
AccB7I CCANNNNNTGG 2 cut(s) 74, 611
AccBSI CCGCTC 1 cut(s) 862
AccII CGCG 1 cut(s) 150
AciI CCGC 3 cut(s) 148, 328, 862
AclWI GGATC 1 cut(s) 1716
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 4 cut(s) 659, 1432, 1438, 1666
AcuI CTGAAG 5 cut(s) 1083, 1113, 1227, 1229, 1707
AfaI GTAC 3 cut(s) 290, 1112, 1217
AfiI CCNNNNNNNGG 3 cut(s) 74, 611, 1662
AgeI ACCGGT 1 cut(s) 395
AgsI TTSAA 5 cut(s) 29, 284, 593, 1421, 1437
AhlI ACTAGT 1 cut(s) 1627
AjnI CCWGG 2 cut(s) 319, 645
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 1716
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 3 cut(s) 198, 465, 958
ApeKI GCWGC 4 cut(s) 98, 736, 1616, 1646
ApoI RAATTY 4 cut(s) 659, 1432, 1438, 1666
AsiGI ACCGGT 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 1203
AspA2I CCTAGG 1 cut(s) 1178
AspS9I GGNCC 4 cut(s) 199, 317, 959, 1057
AsuHPI GGTGA 4 cut(s) 701, 1060, 1420, 1739
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 2 cut(s) 317, 1057
AvrII CCTAGG 1 cut(s) 1178
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 2 cut(s) 14, 1277
BanII GRGCYC 1 cut(s) 1382
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 2 cut(s) 1069, 1233
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 85, 748, 1628, 1658
BccI CCATC 8 cut(s) 476, 605, 680, 686, 1328, 1333, 1393, 1589
BcgI CGANNNNNNTGC 2 cut(s) 874, 908
BciT130I CCWGG 2 cut(s) 321, 647
BciVI GTATCC 1 cut(s) 740
BcoDI GTCTC 1 cut(s) 9
BcuI ACTAGT 1 cut(s) 1627
BfaI CTAG 7 cut(s) 209, 581, 996, 1025, 1179, 1628, 1683
BfuI GTATCC 1 cut(s) 740
BglII AGATCT 1 cut(s) 31
BisI GCNGC 5 cut(s) 99, 737, 863, 1617, 1647
BlnI CCTAGG 1 cut(s) 1178
BlsI GCNGC 5 cut(s) 100, 738, 864, 1618, 1648
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 321, 647
Bme18I GGWCC 2 cut(s) 317, 1057
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 4 cut(s) 199, 317, 959, 1057
BmiI GGNNCC 6 cut(s) 16, 79, 93, 318, 1059, 1279
BmrFI CCNGG 2 cut(s) 321, 647
BmsI GCATC 5 cut(s) 152, 1143, 1329, 1684, 1765
BoxI GACNNNNGTC 1 cut(s) 1055
BpiI GAAGAC 2 cut(s) 1069, 1233
BplI GAGNNNNNCTC 2 cut(s) 366, 398
BpmI CTGGAG 3 cut(s) 64, 456, 909
BpuEI CTTGAG 2 cut(s) 545, 1348
BsaJI CCNNGG 3 cut(s) 18, 872, 1178
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 611, 1662
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 5 cut(s) 639, 825, 889, 941, 1576
BseBI CCWGG 2 cut(s) 321, 647
BseDI CCNNGG 3 cut(s) 18, 872, 1178
BseGI GGATG 6 cut(s) 143, 336, 1134, 1344, 1675, 1755
BseLI CCNNNNNNNGG 3 cut(s) 74, 611, 1662
BseMII CTCAG 2 cut(s) 780, 1283
BseNI ACTGG 5 cut(s) 639, 825, 889, 941, 1576
BseXI GCAGC 4 cut(s) 85, 748, 1628, 1658
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 200, 467, 960
BshNI GGYRCC 2 cut(s) 14, 1277
BshTI ACCGGT 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 396, 1597
BslFI GGGAC 2 cut(s) 330, 1043
BslI CCNNNNNNNGG 3 cut(s) 74, 611, 1662
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 330, 1043
BsnI GGCC 3 cut(s) 200, 467, 960
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 357, 1382
Bsp1407I TGTACA 1 cut(s) 1110
Bsp143I GATC 4 cut(s) 31, 103, 558, 1708
BspACI CCGC 3 cut(s) 148, 328, 862
BspANI GGCC 3 cut(s) 200, 467, 960
BspCNI CTCAG 2 cut(s) 781, 1282
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 6 cut(s) 16, 79, 93, 318, 1059, 1279
BspPI GGATC 1 cut(s) 1716
BspT107I GGYRCC 2 cut(s) 14, 1277
BsrBI CCGCTC 1 cut(s) 862
BsrFI RCCGGY 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 1110
BsrI ACTGG 5 cut(s) 639, 825, 889, 941, 1576
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 3 cut(s) 18, 872, 1178
BssMI GATC 4 cut(s) 31, 103, 558, 1708
BssSI CACGAG 1 cut(s) 954
BssT1I CCWWGG 3 cut(s) 18, 872, 1178
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 2 cut(s) 321, 647
Bst4CI ACNGT 5 cut(s) 352, 1054, 1484, 1698, 1736
Bst6I CTCTTC 2 cut(s) 135, 436
BstAUI TGTACA 1 cut(s) 1110
BstC8I GCNNGC 4 cut(s) 449, 586, 1378, 1688
BstDEI CTNAG 2 cut(s) 789, 1269
BstEII GGTNACC 1 cut(s) 876
BstF5I GGATG 6 cut(s) 143, 336, 1134, 1344, 1675, 1755
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 4 cut(s) 34, 106, 561, 1711
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 31, 103, 558, 1708
BstMWI GCNNNNNNNGC 3 cut(s) 84, 352, 1124
BstNI CCWGG 2 cut(s) 321, 647
BstNSI RCATGY 3 cut(s) 232, 729, 812
BstPAI GACNNNNGTC 1 cut(s) 1055
BstPI GGTNACC 1 cut(s) 876
BstSCI CCNGG 2 cut(s) 319, 645
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 4 cut(s) 85, 748, 1628, 1658
BstV2I GAAGAC 2 cut(s) 1069, 1233
BstX2I RGATCY 1 cut(s) 31
BstXI CCANNNNNNTGG 1 cut(s) 88
BstYI RGATCY 1 cut(s) 31
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 3 cut(s) 200, 467, 960
BtsCI GGATG 6 cut(s) 143, 336, 1134, 1344, 1675, 1755
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 7 cut(s) 278, 357, 568, 671, 1059, 1489, 1703
Cac8I GCNNGC 4 cut(s) 449, 586, 1378, 1688
CciI TCATGA 1 cut(s) 1011
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 4 cut(s) 199, 317, 959, 1057
CseI GACGC 1 cut(s) 1151
Csp6I GTAC 3 cut(s) 289, 1111, 1216
CspAI ACCGGT 1 cut(s) 395
CspCI CAANNNNNGTGG 2 cut(s) 544, 579
CviQI GTAC 3 cut(s) 289, 1111, 1216
DdeI CTNAG 2 cut(s) 789, 1269
DpnI GATC 4 cut(s) 33, 105, 560, 1710
DpnII GATC 4 cut(s) 31, 103, 558, 1708
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 135, 436
EarI CTCTTC 2 cut(s) 135, 436
Eco130I CCWWGG 3 cut(s) 18, 872, 1178
Eco24I GRGCYC 1 cut(s) 1382
Eco32I GATATC 2 cut(s) 1311, 1510
Eco47I GGWCC 2 cut(s) 317, 1057
Eco57I CTGAAG 5 cut(s) 1083, 1113, 1227, 1229, 1707
Eco88I CYCGRG 1 cut(s) 360
Eco91I GGTNACC 1 cut(s) 876
EcoO109I RGGNCCY 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 876
EcoRII CCWGG 2 cut(s) 319, 645
EcoRV GATATC 2 cut(s) 1311, 1510
EcoT14I CCWWGG 3 cut(s) 18, 872, 1178
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 1 cut(s) 1382
ErhI CCWWGG 3 cut(s) 18, 872, 1178
FaqI GGGAC 2 cut(s) 330, 1043
FauI CCCGC 1 cut(s) 155
FauNDI CATATG 1 cut(s) 1192
Fnu4HI GCNGC 5 cut(s) 99, 737, 863, 1617, 1647
FokI GGATG 6 cut(s) 130, 323, 1121, 1351, 1662, 1762
FriOI GRGCYC 1 cut(s) 1382
Fsp4HI GCNGC 5 cut(s) 99, 737, 863, 1617, 1647
FspBI CTAG 7 cut(s) 209, 581, 996, 1025, 1179, 1628, 1683
GluI GCNGC 5 cut(s) 99, 737, 863, 1617, 1647
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 3 cut(s) 64, 456, 909
HaeIII GGCC 3 cut(s) 200, 467, 960
HapII CCGG 2 cut(s) 396, 1597
HgaI GACGC 1 cut(s) 1151
HincII GTYRAC 1 cut(s) 1739
HindII GTYRAC 1 cut(s) 1739
HinfI GANTC 9 cut(s) 152, 166, 215, 236, 546, 1068, 1199, 1552, 1652
HpaII CCGG 2 cut(s) 396, 1597
HphI GGTGA 4 cut(s) 701, 1060, 1420, 1739
Hpy166II GTNNAC 3 cut(s) 1111, 1573, 1739
Hpy188I TCNGA 7 cut(s) 165, 790, 1209, 1272, 1315, 1387, 1517
Hpy188III TCNNGA 5 cut(s) 81, 435, 926, 996, 1012
Hpy8I GTNNAC 3 cut(s) 1111, 1573, 1739
HpyCH4III ACNGT 5 cut(s) 352, 1054, 1484, 1698, 1736
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 352, 1124
HpyF3I CTNAG 2 cut(s) 789, 1269
Kzo9I GATC 4 cut(s) 31, 103, 558, 1708
LmnI GCTCC 4 cut(s) 83, 859, 1021, 1695
Lsp1109I GCAGC 4 cut(s) 85, 748, 1628, 1658
LweI GCATC 5 cut(s) 152, 1143, 1329, 1684, 1765
MaeI CTAG 7 cut(s) 209, 581, 996, 1025, 1179, 1628, 1683
MaeIII GTNAC 5 cut(s) 252, 669, 876, 986, 1048
MalI GATC 4 cut(s) 33, 105, 560, 1710
MbiI CCGCTC 1 cut(s) 862
MboI GATC 4 cut(s) 31, 103, 558, 1708
MfeI CAATTG 1 cut(s) 1227
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 2 cut(s) 357, 1382
MlsI TGGCCA 1 cut(s) 467
MluNI TGGCCA 1 cut(s) 467
MlyI GAGTC 2 cut(s) 209, 230
MmeI TCCRAC 2 cut(s) 1342, 1703
Mox20I TGGCCA 1 cut(s) 467
Mph1103I ATGCAT 1 cut(s) 1120
MroXI GAANNNNTTC 1 cut(s) 1203
MscI TGGCCA 1 cut(s) 467
MseI TTAA 4 cut(s) 221, 516, 1149, 1446
MslI CAYNNNNRTG 1 cut(s) 1605
Msp20I TGGCCA 1 cut(s) 467
MspA1I CMGCKG 2 cut(s) 259, 1649
MspI CCGG 2 cut(s) 396, 1597
MspR9I CCNGG 2 cut(s) 321, 647
MunI CAATTG 1 cut(s) 1227
MvaI CCWGG 2 cut(s) 321, 647
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 84, 352, 1124
NdeI CATATG 1 cut(s) 1192
NdeII GATC 4 cut(s) 31, 103, 558, 1708
NlaIV GGNNCC 6 cut(s) 16, 79, 93, 318, 1059, 1279
NmuCI GTSAC 3 cut(s) 252, 669, 1048
NsiI ATGCAT 1 cut(s) 1120
NspI RCATGY 3 cut(s) 232, 729, 812
PagI TCATGA 1 cut(s) 1011
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 7 cut(s) 152, 166, 546, 1068, 1199, 1552, 1652
PflMI CCANNNNNTGG 2 cut(s) 74, 611
PinAI ACCGGT 1 cut(s) 395
PkrI GCNGC 5 cut(s) 100, 738, 864, 1618, 1648
PleI GAGTC 2 cut(s) 209, 230
PpsI GAGTC 2 cut(s) 209, 230
PpuMI RGGWCCY 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 1055
PsiI TTATAA 1 cut(s) 1773
Psp5II RGGWCCY 1 cut(s) 317
Psp6I CCWGG 2 cut(s) 319, 645
PspEI GGTNACC 1 cut(s) 876
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 2 cut(s) 319, 645
PspN4I GGNNCC 6 cut(s) 16, 79, 93, 318, 1059, 1279
PspPI GGNCC 4 cut(s) 199, 317, 959, 1057
PspPPI RGGWCCY 1 cut(s) 317
PsrI GAACNNNNNNTAC 2 cut(s) 1188, 1220
PsuI RGATCY 1 cut(s) 31
PvuII CAGCTG 2 cut(s) 259, 1649
RsaI GTAC 3 cut(s) 290, 1112, 1217
RsaNI GTAC 3 cut(s) 289, 1111, 1216
RseI CAYNNNNRTG 1 cut(s) 1605
SaqAI TTAA 4 cut(s) 221, 516, 1149, 1446
SatI GCNGC 5 cut(s) 99, 737, 863, 1617, 1647
Sau3AI GATC 4 cut(s) 31, 103, 558, 1708
Sau96I GGNCC 4 cut(s) 199, 317, 959, 1057
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 2 cut(s) 209, 230
ScrFI CCNGG 2 cut(s) 321, 647
SduI GDGCHC 2 cut(s) 357, 1382
SfaNI GCATC 5 cut(s) 152, 1143, 1329, 1684, 1765
SinI GGWCC 2 cut(s) 317, 1057
SmiMI CAYNNNNRTG 1 cut(s) 1605
SmlI CTYRAG 2 cut(s) 524, 1327
SmoI CTYRAG 2 cut(s) 524, 1327
SpeI ACTAGT 1 cut(s) 1627
SsiI CCGC 3 cut(s) 148, 328, 862
SspI AATATT 3 cut(s) 181, 280, 1544
SspMI CTAG 7 cut(s) 209, 581, 996, 1025, 1179, 1628, 1683
StyD4I CCNGG 2 cut(s) 319, 645
StyI CCWWGG 3 cut(s) 18, 872, 1178
TaaI ACNGT 5 cut(s) 352, 1054, 1484, 1698, 1736
TaqI TCGA 4 cut(s) 373, 978, 1140, 1442
TatI WGTACW 3 cut(s) 288, 1110, 1215
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 7 cut(s) 152, 166, 546, 1068, 1199, 1552, 1652
Tru1I TTAA 4 cut(s) 221, 516, 1149, 1446
Tru9I TTAA 4 cut(s) 221, 516, 1149, 1446
TscAI CASTG 7 cut(s) 278, 357, 568, 678, 1059, 1489, 1703
TseFI GTSAC 3 cut(s) 252, 669, 1048
TseI GCWGC 4 cut(s) 98, 736, 1616, 1646
Tsp45I GTSAC 3 cut(s) 252, 669, 1048
TspDTI ATGAA 8 cut(s) 29, 417, 894, 1113, 1488, 1512, 1577, 1733
TspGWI ACGGA 2 cut(s) 727, 1678
TspRI CASTG 7 cut(s) 278, 357, 568, 678, 1059, 1489, 1703
Van91I CCANNNNNTGG 2 cut(s) 74, 611
VpaK11BI GGWCC 2 cut(s) 317, 1057
XapI RAATTY 4 cut(s) 659, 1432, 1438, 1666
XbaI TCTAGA 1 cut(s) 995
XceI RCATGY 3 cut(s) 232, 729, 812
XmaJI CCTAGG 1 cut(s) 1178
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 7 cut(s) 209, 581, 996, 1025, 1179, 1628, 1683
ZrmI AGTACT 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.